data_PRDCC_002590 # _chem_comp.id PRD_002590 _chem_comp.name "methyl 6-fluoro-N-acetyllactosaminide" _chem_comp.formula "C15 H26 F N O10" _chem_comp.formula_weight 399.366 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type saccharide _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_pcm ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.pdbx_ordinal PRD_002590 N1 N1 N 0 1 N N N -25.278 -10.935 -1.242 3.420 1.397 1.040 A1I0L 1 N2 polymer 1 1 N N N 1 PRD_002590 C1 C1 C 0 1 N N R -23.050 -10.479 -0.366 1.204 0.362 0.944 A1I0L 1 C3 polymer 1 1 N N N 2 PRD_002590 C2 C2 C 0 1 N N R -24.544 -10.565 -0.071 2.559 0.516 0.247 A1I0L 1 C2 polymer 1 1 N N N 3 PRD_002590 C3 C3 C 0 1 N N R -24.779 -11.587 1.053 3.217 -0.861 0.119 A1I0L 1 C1 polymer 1 1 N N N 4 PRD_002590 C4 C4 C 0 1 N N N -26.552 -12.699 2.168 5.208 -1.947 -0.655 A1I0L 1 CM polymer 1 1 N N N 5 PRD_002590 C5 C5 C 0 1 N N N -27.141 -10.952 -2.748 5.299 2.991 1.257 A1I0L 1 C8 polymer 1 1 N N N 6 PRD_002590 C6 C6 C 0 1 N N S -22.338 -10.117 0.907 0.341 -0.622 0.147 A1I0L 1 C4 polymer 1 1 N N N 7 PRD_002590 O1 O1 O 0 1 N N N -20.922 -10.100 0.710 -0.899 -0.828 0.827 A1I0L 1 O4 polymer 1 1 N N N 8 PRD_002590 O2 O2 O 0 1 N N N -24.059 -11.168 2.199 2.350 -1.736 -0.604 A1I0L 1 O5 polymer 1 1 N N N 9 PRD_002590 C7 C7 C 0 1 N N S -22.642 -11.148 2.024 1.084 -1.955 0.023 A1I0L 1 C5 polymer 1 1 N N N 10 PRD_002590 O3 O3 O 0 1 N N N -22.746 -9.548 -1.394 0.550 1.632 1.002 A1I0L 1 O3 polymer 1 1 N N N 11 PRD_002590 O4 O4 O 0 1 N N N -26.149 -11.590 1.340 4.457 -0.734 -0.579 A1I0L 1 O1 polymer 1 1 N N N 12 PRD_002590 C8 C8 C 0 1 N N N -22.034 -10.801 3.371 0.256 -2.924 -0.822 A1I0L 1 C6 polymer 1 1 N N N 13 PRD_002590 F1 F1 F 0 1 N N N -22.358 -9.569 3.747 0.874 -4.179 -0.833 A1I0L 1 F6 polymer 1 1 N N N 14 PRD_002590 C9 C9 C 0 1 N N N -26.449 -10.371 -1.563 4.414 2.084 0.442 A1I0L 1 C7 polymer 1 1 N N N 15 PRD_002590 O5 O5 O 0 1 N N N -26.916 -9.428 -0.934 4.596 1.972 -0.752 A1I0L 1 O7 polymer 1 1 N N N 16 PRD_002590 C10 C10 C 0 1 N N R -20.202 -8.990 1.154 -2.051 -0.529 0.036 GAL 2 C1 polymer 1 1 N N N 17 PRD_002590 C11 C11 C 0 1 N N R -18.709 -9.291 1.129 -3.316 -0.891 0.820 GAL 2 C2 polymer 1 1 N N N 18 PRD_002590 C12 C12 C 0 1 N N S -17.892 -8.052 1.411 -4.547 -0.513 -0.009 GAL 2 C3 polymer 1 1 N N N 19 PRD_002590 C13 C13 C 0 1 N N R -18.367 -6.902 0.545 -4.481 0.979 -0.349 GAL 2 C4 polymer 1 1 N N N 20 PRD_002590 C14 C14 C 0 1 N N R -19.846 -6.691 0.730 -3.171 1.269 -1.087 GAL 2 C5 polymer 1 1 N N N 21 PRD_002590 C15 C15 C 0 1 N N N -20.396 -5.560 -0.110 -3.070 2.768 -1.377 GAL 2 C6 polymer 1 1 N N N 22 PRD_002590 O6 O6 O 0 1 N N N -18.392 -10.265 2.148 -3.329 -2.296 1.081 GAL 2 O2 polymer 1 1 N N N 23 PRD_002590 O7 O7 O 0 1 N N N -16.495 -8.263 1.219 -5.731 -0.780 0.744 GAL 2 O3 polymer 1 1 N N N 24 PRD_002590 O8 O8 O 0 1 N N N -18.032 -7.177 -0.837 -4.529 1.746 0.856 GAL 2 O4 polymer 1 1 N N N 25 PRD_002590 O9 O9 O 0 1 N N N -20.514 -7.890 0.316 -2.068 0.865 -0.274 GAL 2 O5 polymer 1 1 N N N 26 PRD_002590 O10 O10 O 0 1 N N N -21.814 -5.420 0.079 -1.906 3.023 -2.167 GAL 2 O6 polymer 1 1 N N N 27 PRD_002590 H1 H1 H 0 1 N N N -24.903 -11.641 -1.843 3.272 1.490 1.994 A1I0L 1 HN2 polymer 1 1 N N N 28 PRD_002590 H2 H2 H 0 1 N N N -22.711 -11.479 -0.673 1.354 -0.019 1.954 A1I0L 1 H3 polymer 1 1 N N N 29 PRD_002590 H3 H3 H 0 1 N N N -24.885 -9.581 0.283 2.413 0.944 -0.744 A1I0L 1 H2 polymer 1 1 N N N 30 PRD_002590 H4 H4 H 0 1 N N N -24.441 -12.578 0.717 3.400 -1.270 1.113 A1I0L 1 H1 polymer 1 1 N N N 31 PRD_002590 H5 H5 H 0 1 N N N -27.634 -12.643 2.356 5.441 -2.294 0.352 A1I0L 1 HM1 polymer 1 1 N N N 32 PRD_002590 H6 H6 H 0 1 N N N -26.317 -13.643 1.655 4.623 -2.705 -1.175 A1I0L 1 HM2 polymer 1 1 N N N 33 PRD_002590 H7 H7 H 0 1 N N N -26.012 -12.657 3.125 6.135 -1.767 -1.200 A1I0L 1 HM3 polymer 1 1 N N N 34 PRD_002590 H8 H8 H 0 1 N N N -28.079 -10.407 -2.929 4.986 2.962 2.301 A1I0L 1 H81 polymer 1 1 N N N 35 PRD_002590 H9 H9 H 0 1 N N N -26.491 -10.865 -3.631 6.333 2.656 1.179 A1I0L 1 H82 polymer 1 1 N N N 36 PRD_002590 H10 H10 H 0 1 N N N -27.363 -12.013 -2.559 5.218 4.011 0.882 A1I0L 1 H83 polymer 1 1 N N N 37 PRD_002590 H11 H11 H 0 1 N N N -22.684 -9.128 1.243 0.150 -0.218 -0.846 A1I0L 1 H4 polymer 1 1 N N N 38 PRD_002590 H12 H12 H 0 1 N N N -22.278 -12.136 1.705 1.239 -2.378 1.016 A1I0L 1 H5 polymer 1 1 N N N 39 PRD_002590 H13 H13 H 0 1 N Y N -21.807 -9.532 -1.540 1.044 2.307 1.486 A1I0L 1 HO3 polymer 1 1 N N N 40 PRD_002590 H14 H14 H 0 1 N N N -22.402 -11.513 4.124 -0.743 -3.015 -0.396 A1I0L 1 H61 polymer 1 1 N N N 41 PRD_002590 H15 H15 H 0 1 N N N -20.939 -10.877 3.299 0.183 -2.546 -1.842 A1I0L 1 H62 polymer 1 1 N N N 42 PRD_002590 H16 H16 H 0 1 N N N -20.485 -8.753 2.190 -2.018 -1.107 -0.887 GAL 2 H1 polymer 1 1 N N N 43 PRD_002590 H17 H17 H 0 1 N N N -18.440 -9.682 0.137 -3.329 -0.345 1.763 GAL 2 H2 polymer 1 1 N N N 44 PRD_002590 H18 H18 H 0 1 N N N -18.065 -7.771 2.460 -4.560 -1.096 -0.930 GAL 2 H3 polymer 1 1 N N N 45 PRD_002590 H19 H19 H 0 1 N N N -17.844 -5.990 0.868 -5.324 1.246 -0.985 GAL 2 H4 polymer 1 1 N N N 46 PRD_002590 H20 H20 H 0 1 N N N -20.053 -6.487 1.791 -3.153 0.715 -2.026 GAL 2 H5 polymer 1 1 N N N 47 PRD_002590 H21 H21 H 0 1 N N N -19.900 -4.622 0.181 -3.957 3.094 -1.921 GAL 2 H61 polymer 1 1 N N N 48 PRD_002590 H22 H22 H 0 1 N N N -20.193 -5.768 -1.171 -2.998 3.316 -0.438 GAL 2 H62 polymer 1 1 N N N 49 PRD_002590 H23 H23 H 0 1 N Y N -17.461 -10.451 2.130 -2.575 -2.608 1.599 GAL 2 HO2 polymer 1 1 N N N 50 PRD_002590 H24 H24 H 0 1 N Y N -16.024 -7.460 1.407 -5.834 -1.706 1.000 GAL 2 HO3 polymer 1 1 N N N 51 PRD_002590 H25 H25 H 0 1 N Y N -18.328 -6.459 -1.384 -5.331 1.608 1.378 GAL 2 HO4 polymer 1 1 N N N 52 PRD_002590 H26 H26 H 0 1 N Y N -22.136 -4.705 -0.457 -1.778 3.955 -2.389 GAL 2 HO6 polymer 1 1 N N N 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_002590 C5 C9 SING N N 1 PRD_002590 C9 N1 SING N N 2 PRD_002590 C9 O5 DOUB N N 3 PRD_002590 O3 C1 SING N N 4 PRD_002590 N1 C2 SING N N 5 PRD_002590 C1 C2 SING N N 6 PRD_002590 C1 C6 SING N N 7 PRD_002590 C2 C3 SING N N 8 PRD_002590 O1 C6 SING N N 9 PRD_002590 C6 C7 SING N N 10 PRD_002590 C3 O4 SING N N 11 PRD_002590 C3 O2 SING N N 12 PRD_002590 O4 C4 SING N N 13 PRD_002590 C7 O2 SING N N 14 PRD_002590 C7 C8 SING N N 15 PRD_002590 C8 F1 SING N N 16 PRD_002590 N1 H1 SING N N 17 PRD_002590 C1 H2 SING N N 18 PRD_002590 C2 H3 SING N N 19 PRD_002590 C3 H4 SING N N 20 PRD_002590 C4 H5 SING N N 21 PRD_002590 C4 H6 SING N N 22 PRD_002590 C4 H7 SING N N 23 PRD_002590 C5 H8 SING N N 24 PRD_002590 C5 H9 SING N N 25 PRD_002590 C5 H10 SING N N 26 PRD_002590 C6 H11 SING N N 27 PRD_002590 C7 H12 SING N N 28 PRD_002590 O3 H13 SING N N 29 PRD_002590 C8 H14 SING N N 30 PRD_002590 C8 H15 SING N N 31 PRD_002590 C10 C11 SING N N 32 PRD_002590 C10 O9 SING N N 33 PRD_002590 C10 H16 SING N N 34 PRD_002590 C11 C12 SING N N 35 PRD_002590 C11 O6 SING N N 36 PRD_002590 C11 H17 SING N N 37 PRD_002590 C12 C13 SING N N 38 PRD_002590 C12 O7 SING N N 39 PRD_002590 C12 H18 SING N N 40 PRD_002590 C13 C14 SING N N 41 PRD_002590 C13 O8 SING N N 42 PRD_002590 C13 H19 SING N N 43 PRD_002590 C14 C15 SING N N 44 PRD_002590 C14 O9 SING N N 45 PRD_002590 C14 H20 SING N N 46 PRD_002590 C15 O10 SING N N 47 PRD_002590 C15 H21 SING N N 48 PRD_002590 C15 H22 SING N N 49 PRD_002590 O6 H23 SING N N 50 PRD_002590 O7 H24 SING N N 51 PRD_002590 O8 H25 SING N N 52 PRD_002590 O10 H26 SING N N 53 PRD_002590 O1 C10 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_002590 SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]1O[C@H](CF)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1NC(C)=O" PRD_002590 SMILES CACTVS 3.385 "CO[CH]1O[CH](CF)[CH](O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH](O)[CH]1NC(C)=O" PRD_002590 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1OC)CF)O[C@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)O)O)O" PRD_002590 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1C(C(C(OC1OC)CF)OC2C(C(C(C(O2)CO)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id PRD_002590 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{S})-6-(fluoranylmethyl)-5-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-methoxy-4-oxidanyl-oxan-3-yl]ethanamide" #