data_PRDCC_002605 # _chem_comp.id PRD_002605 _chem_comp.name "Carmaphycin B, bound form" _chem_comp.formula "C25 H47 N3 O7 S" _chem_comp.formula_weight 533.722 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_comp_type ? _chem_comp.pdbx_pcm ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.pdbx_ordinal PRD_002605 C1 C1 C 0 1 N N N 151.096 174.401 143.473 6.231 0.267 -0.310 6NA 1 CA polymer 1 1 N N N 1 PRD_002605 C2 C2 C 0 1 N N N 151.328 174.632 141.999 4.966 0.817 0.297 6NA 1 C polymer 1 1 N N N 2 PRD_002605 O1 O1 O 0 1 N N N 152.006 173.859 141.320 4.977 1.256 1.428 6NA 1 O polymer 1 1 N N N 3 PRD_002605 C3 C3 C 0 1 N N N 151.071 175.692 144.269 7.374 0.380 0.701 6NA 1 CB polymer 1 1 N N N 4 PRD_002605 C4 C4 C 0 1 N N N 152.459 176.205 144.635 8.658 -0.178 0.084 6NA 1 CG polymer 1 1 N N N 5 PRD_002605 C5 C5 C 0 1 N N N 152.912 177.430 143.858 9.800 -0.065 1.095 6NA 1 CD polymer 1 1 N N N 6 PRD_002605 C6 C6 C 0 1 N N N 153.811 177.120 142.682 11.085 -0.623 0.479 6NA 1 C6 polymer 1 1 N N N 7 PRD_002605 N1 N1 N 0 1 N N N 150.757 175.730 141.479 3.822 0.820 -0.416 VAL 2 N polymer 1 1 Y Y N 8 PRD_002605 C7 C7 C 0 1 N N S 150.235 175.761 140.122 2.593 1.355 0.175 VAL 2 CA polymer 1 1 Y N N 9 PRD_002605 C8 C8 C 0 1 N N N 151.224 176.462 139.194 1.399 0.725 -0.496 VAL 2 C polymer 1 1 Y N Y 10 PRD_002605 O2 O2 O 0 1 N N N 151.603 177.612 139.434 1.510 0.243 -1.603 VAL 2 O polymer 1 1 Y N Y 11 PRD_002605 C9 C9 C 0 1 N N N 148.856 176.440 140.082 2.549 2.871 -0.024 VAL 2 CB polymer 1 1 N N N 12 PRD_002605 C10 C10 C 0 1 N N N 147.873 175.729 140.999 3.681 3.523 0.773 VAL 2 CG1 polymer 1 1 N N N 13 PRD_002605 C11 C11 C 0 1 N N N 148.316 176.506 138.661 2.718 3.196 -1.509 VAL 2 CG2 polymer 1 1 N N N 14 PRD_002605 N2 N2 N 0 1 N N N 151.645 175.768 138.131 0.208 0.699 0.135 OMT 3 N polymer 1 1 Y Y N 15 PRD_002605 C12 C12 C 0 1 N N S 153.037 175.799 137.726 -0.927 -0.002 -0.472 OMT 3 CA polymer 1 1 Y N N 16 PRD_002605 C13 C13 C 0 1 N N N 153.925 175.131 138.774 -0.864 -1.486 -0.105 OMT 3 CB polymer 1 1 N N N 17 PRD_002605 C14 C14 C 0 1 N N N 155.207 175.908 139.080 0.382 -2.115 -0.733 OMT 3 CG polymer 1 1 N N N 18 PRD_002605 S1 S1 S 0 1 N N N 156.680 174.921 138.938 0.455 -3.874 -0.299 OMT 3 SD polymer 1 1 N N N 19 PRD_002605 C15 C15 C 0 1 N N N 157.137 175.044 137.248 1.978 -4.402 -1.131 OMT 3 CE polymer 1 1 N N N 20 PRD_002605 C16 C16 C 0 1 N N N 153.237 175.135 136.365 -2.214 0.589 0.042 OMT 3 C polymer 1 1 Y N Y 21 PRD_002605 O3 O3 O 0 1 N N N 152.505 174.209 136.009 -2.187 1.505 0.836 OMT 3 O polymer 1 1 Y N Y 22 PRD_002605 O4 O4 O 0 1 N N N 156.336 173.556 139.215 0.644 -3.987 1.105 OMT 3 OD1 polymer 1 1 N N N 23 PRD_002605 O5 O5 O 0 1 N N N 157.710 175.528 139.731 -0.646 -4.537 -0.905 OMT 3 OD2 polymer 1 1 N N N 24 PRD_002605 N3 N3 N 0 1 N N N 154.230 175.618 135.615 -3.396 0.099 -0.382 A1KN4 4 N polymer 1 1 Y Y N 25 PRD_002605 C17 C17 C 0 1 N N S 154.072 176.000 134.213 -4.648 0.673 0.117 A1KN4 4 CA polymer 1 1 Y N N 26 PRD_002605 C18 C18 C 0 1 N N N 153.921 177.521 134.126 -5.020 1.896 -0.724 A1KN4 4 CB polymer 1 1 N N N 27 PRD_002605 C19 C19 C 0 1 N N N 152.645 178.013 133.438 -3.967 2.989 -0.529 A1KN4 4 CG polymer 1 1 N N N 28 PRD_002605 C20 C20 C 0 1 N N N 151.415 177.551 134.196 -4.270 4.162 -1.463 A1KN4 4 CD1 polymer 1 1 N N N 29 PRD_002605 C21 C21 C 0 1 N N N 152.649 179.523 133.294 -3.997 3.472 0.923 A1KN4 4 CD2 polymer 1 1 N N N 30 PRD_002605 C22 C22 C 0 1 N N N 155.175 175.455 133.298 -5.746 -0.355 0.022 A1KN4 4 C polymer 1 1 Y N Y 31 PRD_002605 C23 C23 C 0 1 N N N 153.530 173.589 132.729 -7.633 -1.508 1.142 A1KN4 4 C24 polymer 1 1 N N N 32 PRD_002605 C24 C24 C 0 1 N N S 155.010 173.952 132.997 -7.038 -0.149 0.769 A1KN4 4 C23 polymer 1 1 Y N Y 33 PRD_002605 C25 C25 C 0 1 N N N 155.507 173.105 134.171 -8.025 0.613 -0.119 A1KN4 4 C25 polymer 1 1 N N N 34 PRD_002605 O6 O6 O 0 1 N N N 156.430 175.682 133.883 -5.590 -1.343 -0.654 A1KN4 4 O polymer 1 1 Y N Y 35 PRD_002605 O7 O7 O 0 1 N N N 152.997 172.761 133.749 -8.796 -1.313 1.950 A1KN4 4 O7 polymer 1 1 N N N 36 PRD_002605 H1 H1 H 0 0 N N N 150.131 173.889 143.602 6.082 -0.780 -0.574 6NA 1 HAC1 polymer 1 1 N N N 37 PRD_002605 H2 H2 H 0 0 N N N 151.904 173.763 143.861 6.481 0.835 -1.206 6NA 1 HAC2 polymer 1 1 N N N 38 PRD_002605 H3 H3 H 0 0 N N N 150.562 176.461 143.670 7.523 1.427 0.965 6NA 1 HBC1 polymer 1 1 N N N 39 PRD_002605 H4 H4 H 0 0 N N N 150.508 175.518 145.198 7.124 -0.189 1.597 6NA 1 HBC2 polymer 1 1 N N N 40 PRD_002605 H5 H5 H 0 0 N N N 152.458 176.460 145.705 8.509 -1.225 -0.180 6NA 1 HGC1 polymer 1 1 N N N 41 PRD_002605 H6 H6 H 0 0 N N N 153.182 175.397 144.451 8.908 0.391 -0.812 6NA 1 HGC2 polymer 1 1 N N N 42 PRD_002605 H7 H7 H 0 0 N N N 152.019 177.950 143.482 9.949 0.982 1.360 6NA 1 HDC1 polymer 1 1 N N N 43 PRD_002605 H8 H8 H 0 0 N N N 153.459 178.092 144.546 9.550 -0.633 1.991 6NA 1 HDC2 polymer 1 1 N N N 44 PRD_002605 H9 H9 H 0 0 N N N 154.091 178.056 142.177 11.334 -0.054 -0.417 6NA 1 H6C1 polymer 1 1 N N N 45 PRD_002605 H10 H10 H 0 0 N N N 154.718 176.610 143.038 11.898 -0.542 1.199 6NA 1 H6C2 polymer 1 1 N N N 46 PRD_002605 H11 H11 H 0 0 N N N 153.278 176.468 141.975 10.936 -1.670 0.215 6NA 1 H6C3 polymer 1 1 N N N 47 PRD_002605 H12 H12 H 0 1 N N N 150.688 176.553 142.043 3.813 0.469 -1.320 VAL 2 H polymer 1 1 Y Y N 48 PRD_002605 H13 H13 H 0 1 N N N 150.111 174.728 139.766 2.573 1.127 1.240 VAL 2 HA polymer 1 1 Y N N 49 PRD_002605 H14 H14 H 0 1 N N N 148.978 177.470 140.447 1.591 3.256 0.326 VAL 2 HB polymer 1 1 N N N 50 PRD_002605 H15 H15 H 0 0 N N N 146.897 176.233 140.952 4.639 3.138 0.424 VAL 2 HG11 polymer 1 1 N N N 51 PRD_002605 H16 H16 H 0 0 N N N 147.761 174.683 140.676 3.650 4.603 0.632 VAL 2 HG12 polymer 1 1 N N N 52 PRD_002605 H17 H17 H 0 0 N N N 148.250 175.756 142.032 3.560 3.291 1.832 VAL 2 HG13 polymer 1 1 N N N 53 PRD_002605 H18 H18 H 0 0 N N N 147.331 176.996 138.665 2.766 4.277 -1.641 VAL 2 HG21 polymer 1 1 N N N 54 PRD_002605 H19 H19 H 0 0 N N N 149.010 177.083 138.032 3.640 2.744 -1.877 VAL 2 HG22 polymer 1 1 N N N 55 PRD_002605 H20 H20 H 0 0 N N N 148.217 175.487 138.259 1.871 2.799 -2.067 VAL 2 HG23 polymer 1 1 N N N 56 PRD_002605 H21 H21 H 0 1 N N N 150.991 175.221 137.609 0.102 1.143 0.990 OMT 3 H polymer 1 1 Y Y N 57 PRD_002605 H22 H22 H 0 1 N N N 153.355 176.848 137.637 -0.883 0.107 -1.556 OMT 3 HA polymer 1 1 Y N N 58 PRD_002605 H23 H23 H 0 1 N N N 153.348 175.032 139.705 -0.818 -1.591 0.979 OMT 3 HB2 polymer 1 1 N N N 59 PRD_002605 H24 H24 H 0 1 N N N 154.204 174.132 138.407 -1.754 -1.991 -0.481 OMT 3 HB3 polymer 1 1 N N N 60 PRD_002605 H25 H25 H 0 1 N N N 155.282 176.750 138.376 0.335 -2.009 -1.817 OMT 3 HG2 polymer 1 1 N N N 61 PRD_002605 H26 H26 H 0 1 N N N 155.144 176.295 140.108 1.271 -1.610 -0.357 OMT 3 HG3 polymer 1 1 N N N 62 PRD_002605 H27 H27 H 0 1 N N N 158.049 174.456 137.071 2.821 -3.830 -0.743 OMT 3 HE1 polymer 1 1 N N N 63 PRD_002605 H28 H28 H 0 1 N N N 156.323 174.656 136.619 2.144 -5.464 -0.947 OMT 3 HE2 polymer 1 1 N N N 64 PRD_002605 H29 H29 H 0 1 N N N 157.325 176.098 136.995 1.885 -4.230 -2.203 OMT 3 HE3 polymer 1 1 N N N 65 PRD_002605 H30 H30 H 0 1 N N N 155.131 175.724 136.035 -3.418 -0.633 -1.017 A1KN4 4 H polymer 1 1 Y Y N 66 PRD_002605 H31 H31 H 0 1 N N N 153.125 175.568 133.857 -4.521 0.973 1.158 A1KN4 4 HA polymer 1 1 Y N N 67 PRD_002605 H32 H32 H 0 1 N N N 154.782 177.917 133.568 -5.060 1.614 -1.776 A1KN4 4 HB2 polymer 1 1 N N N 68 PRD_002605 H33 H33 H 0 1 N N N 153.932 177.923 135.150 -5.994 2.270 -0.411 A1KN4 4 HB3 polymer 1 1 N N N 69 PRD_002605 H34 H34 H 0 1 N N N 152.612 177.573 132.430 -2.980 2.587 -0.757 A1KN4 4 HG polymer 1 1 N N N 70 PRD_002605 H35 H35 H 0 0 N N N 151.431 176.455 134.289 -5.257 4.563 -1.234 A1KN4 4 HD11 polymer 1 1 N N N 71 PRD_002605 H36 H36 H 0 0 N N N 151.410 178.004 135.198 -3.520 4.940 -1.324 A1KN4 4 HD12 polymer 1 1 N N N 72 PRD_002605 H37 H37 H 0 0 N N N 150.511 177.859 133.650 -4.248 3.818 -2.497 A1KN4 4 HD13 polymer 1 1 N N N 73 PRD_002605 H38 H38 H 0 0 N N N 151.722 179.847 132.798 -3.781 2.636 1.589 A1KN4 4 HD21 polymer 1 1 N N N 74 PRD_002605 H39 H39 H 0 0 N N N 152.713 179.986 134.290 -3.247 4.251 1.062 A1KN4 4 HD22 polymer 1 1 N N N 75 PRD_002605 H40 H40 H 0 0 N N N 153.515 179.831 132.690 -4.984 3.874 1.152 A1KN4 4 HD23 polymer 1 1 N N N 76 PRD_002605 H41 H41 H 0 1 N N N 152.940 174.516 132.678 -7.907 -2.047 0.235 A1KN4 4 H15 polymer 1 1 N N N 77 PRD_002605 H42 H42 H 0 1 N N N 153.462 173.058 131.768 -6.897 -2.087 1.699 A1KN4 4 H16 polymer 1 1 N N N 78 PRD_002605 H43 H43 H 0 1 N N N 155.601 173.703 132.103 -6.847 0.425 1.675 A1KN4 4 H17 polymer 1 1 Y N Y 79 PRD_002605 H44 H44 H 0 1 N N N 156.560 173.348 134.379 -8.960 0.762 0.422 A1KN4 4 H18 polymer 1 1 N N N 80 PRD_002605 H45 H45 H 0 1 N N N 154.898 173.320 135.062 -7.601 1.581 -0.385 A1KN4 4 H19 polymer 1 1 N N N 81 PRD_002605 H46 H46 H 0 1 N N N 155.420 172.038 133.916 -8.217 0.039 -1.025 A1KN4 4 H20 polymer 1 1 N N N 82 PRD_002605 H47 H47 H 0 1 N N N 152.832 173.282 134.526 -9.226 -2.135 2.225 A1KN4 4 H22 polymer 1 1 N N N 83 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_002605 C1 C2 SING N N 1 PRD_002605 C1 C3 SING N N 2 PRD_002605 C1 H1 SING N N 3 PRD_002605 C1 H2 SING N N 4 PRD_002605 C2 O1 DOUB N N 5 PRD_002605 C3 C4 SING N N 6 PRD_002605 C3 H3 SING N N 7 PRD_002605 C3 H4 SING N N 8 PRD_002605 C4 C5 SING N N 9 PRD_002605 C4 H5 SING N N 10 PRD_002605 C4 H6 SING N N 11 PRD_002605 C5 C6 SING N N 12 PRD_002605 C5 H7 SING N N 13 PRD_002605 C5 H8 SING N N 14 PRD_002605 C6 H9 SING N N 15 PRD_002605 C6 H10 SING N N 16 PRD_002605 C6 H11 SING N N 17 PRD_002605 N1 C7 SING N N 18 PRD_002605 N1 H12 SING N N 19 PRD_002605 C7 C8 SING N N 20 PRD_002605 C7 C9 SING N N 21 PRD_002605 C7 H13 SING N N 22 PRD_002605 C8 O2 DOUB N N 23 PRD_002605 C9 C10 SING N N 24 PRD_002605 C9 C11 SING N N 25 PRD_002605 C9 H14 SING N N 26 PRD_002605 C10 H15 SING N N 27 PRD_002605 C10 H16 SING N N 28 PRD_002605 C10 H17 SING N N 29 PRD_002605 C11 H18 SING N N 30 PRD_002605 C11 H19 SING N N 31 PRD_002605 C11 H20 SING N N 32 PRD_002605 N2 C12 SING N N 33 PRD_002605 N2 H21 SING N N 34 PRD_002605 C12 C13 SING N N 35 PRD_002605 C12 C16 SING N N 36 PRD_002605 C12 H22 SING N N 37 PRD_002605 C13 C14 SING N N 38 PRD_002605 C13 H23 SING N N 39 PRD_002605 C13 H24 SING N N 40 PRD_002605 C14 S1 SING N N 41 PRD_002605 C14 H25 SING N N 42 PRD_002605 C14 H26 SING N N 43 PRD_002605 S1 C15 SING N N 44 PRD_002605 S1 O4 DOUB N N 45 PRD_002605 S1 O5 DOUB N N 46 PRD_002605 C15 H27 SING N N 47 PRD_002605 C15 H28 SING N N 48 PRD_002605 C15 H29 SING N N 49 PRD_002605 C16 O3 DOUB N N 50 PRD_002605 C23 C24 SING N N 51 PRD_002605 C23 O7 SING N N 52 PRD_002605 C24 C22 SING N N 53 PRD_002605 C24 C25 SING N N 54 PRD_002605 C21 C19 SING N N 55 PRD_002605 C22 O6 DOUB N N 56 PRD_002605 C22 C17 SING N N 57 PRD_002605 C19 C18 SING N N 58 PRD_002605 C19 C20 SING N N 59 PRD_002605 C18 C17 SING N N 60 PRD_002605 C17 N3 SING N N 61 PRD_002605 N3 H30 SING N N 62 PRD_002605 C17 H31 SING N N 63 PRD_002605 C18 H32 SING N N 64 PRD_002605 C18 H33 SING N N 65 PRD_002605 C19 H34 SING N N 66 PRD_002605 C20 H35 SING N N 67 PRD_002605 C20 H36 SING N N 68 PRD_002605 C20 H37 SING N N 69 PRD_002605 C21 H38 SING N N 70 PRD_002605 C21 H39 SING N N 71 PRD_002605 C21 H40 SING N N 72 PRD_002605 C23 H41 SING N N 73 PRD_002605 C23 H42 SING N N 74 PRD_002605 C24 H43 SING N N 75 PRD_002605 C25 H44 SING N N 76 PRD_002605 C25 H45 SING N N 77 PRD_002605 C25 H46 SING N N 78 PRD_002605 O7 H47 SING N N 79 PRD_002605 C2 N1 SING N N 80 PRD_002605 C8 N2 SING N N 81 PRD_002605 C16 N3 SING N N 82 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_002605 SMILES_CANONICAL CACTVS 3.385 "CCCCCC(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CC[S](C)(=O)=O)C(=O)N[C@@H](CC(C)C)C(=O)[C@@H](C)CO" PRD_002605 SMILES CACTVS 3.385 "CCCCCC(=O)N[CH](C(C)C)C(=O)N[CH](CC[S](C)(=O)=O)C(=O)N[CH](CC(C)C)C(=O)[CH](C)CO" PRD_002605 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCC(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CCS(=O)(=O)C)C(=O)N[C@@H](CC(C)C)C(=O)[C@@H](C)CO" PRD_002605 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCC(=O)NC(C(C)C)C(=O)NC(CCS(=O)(=O)C)C(=O)NC(CC(C)C)C(=O)C(C)CO" # _pdbx_chem_comp_identifier.comp_id PRD_002605 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(2~{S})-1-[[(2~{S})-1-[[(2~{S},4~{S})-2,6-dimethyl-1-oxidanyl-3-oxidanylidene-heptan-4-yl]amino]-4-methylsulfonyl-1-oxidanylidene-butan-2-yl]amino]-3-methyl-1-oxidanylidene-butan-2-yl]hexanamide" #