data_PRDCC_900002 # _chem_comp.id PRD_900002 _chem_comp.name raffinose _chem_comp.type saccharide _chem_comp.formula "C18 H32 O16" _chem_comp.pdbx_release_status REF_ONLY _chem_comp.formula_weight 504.437 _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_pcm ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_900002 "C1'" C6 C 0 1 N N N -7.075 28.486 55.403 -3.403 1.711 -1.748 FRU 1 C1 polymer 1 1 1 ? ? ? PRD_900002 "C2'" C5 C 0 1 N N S -6.041 29.047 54.504 -2.574 1.440 -0.491 FRU 1 C2 polymer 1 1 2 ? ? ? PRD_900002 "C3'" C4 C 0 1 N N S -6.091 30.314 53.941 -2.979 2.421 0.626 FRU 1 C3 polymer 1 1 3 ? ? ? PRD_900002 "C4'" C3 C 0 1 N N S -4.966 30.278 52.788 -1.692 3.237 0.900 FRU 1 C4 polymer 1 1 4 ? ? ? PRD_900002 "C5'" C2 C 0 1 N N R -5.099 29.008 52.283 -0.890 3.028 -0.410 FRU 1 C5 polymer 1 1 5 ? ? ? PRD_900002 "C6'" C1 C 0 1 N N N -3.823 28.389 51.766 0.608 3.214 -0.160 FRU 1 C6 polymer 1 1 6 ? ? ? PRD_900002 "O1'" O5 O 0 1 N N N -8.251 28.565 54.592 -2.924 0.896 -2.820 FRU 1 O1 polymer 1 1 7 ? ? ? PRD_900002 O1 O6 O 0 1 N N N -4.780 29.101 55.314 -2.776 0.095 -0.053 FRU 1 O2 polymer 1 1 8 ? ? ? PRD_900002 "O3'" O3 O 0 1 N N N -5.916 31.392 54.837 -3.378 1.707 1.798 FRU 1 O3 polymer 1 1 9 ? ? ? PRD_900002 "O4'" O2 O 0 1 N N N -5.213 31.285 51.796 -1.996 4.619 1.097 FRU 1 O4 polymer 1 1 10 ? ? ? PRD_900002 "O2'" O4 O 0 1 N N N -5.650 28.123 53.478 -1.180 1.660 -0.768 FRU 1 O5 polymer 1 1 11 ? ? ? PRD_900002 "O6'" O1 O 0 1 N N N -4.172 27.087 51.197 1.330 2.921 -1.358 FRU 1 O6 polymer 1 1 12 ? ? ? PRD_900002 C1 C7 C 0 1 N N R -4.241 27.928 55.948 -2.245 -0.891 -0.941 GLC 2 C1 polymer 1 1 13 ? ? ? PRD_900002 C2 C8 C 0 1 N N R -3.873 28.250 57.375 -3.099 -2.159 -0.865 GLC 2 C2 polymer 1 1 14 ? ? ? PRD_900002 C3 C9 C 0 1 N N S -2.894 29.357 57.372 -3.030 -2.728 0.555 GLC 2 C3 polymer 1 1 15 ? ? ? PRD_900002 C4 C10 C 0 1 N N S -1.639 28.930 56.690 -1.566 -2.991 0.918 GLC 2 C4 polymer 1 1 16 ? ? ? PRD_900002 C5 C11 C 0 1 N N R -1.889 28.380 55.306 -0.770 -1.691 0.773 GLC 2 C5 polymer 1 1 17 ? ? ? PRD_900002 C6 C12 C 0 1 N N N -0.702 27.543 54.882 0.705 -1.959 1.076 GLC 2 C6 polymer 1 1 18 ? ? ? PRD_900002 O2 O7 O 0 1 N N N -5.089 28.610 58.102 -4.455 -1.842 -1.188 GLC 2 O2 polymer 1 1 19 ? ? ? PRD_900002 O3 O8 O 0 1 N N N -2.522 29.752 58.742 -3.766 -3.952 0.617 GLC 2 O3 polymer 1 1 20 ? ? ? PRD_900002 O4 O9 O 0 1 N N N -0.794 30.069 56.517 -1.483 -3.454 2.267 GLC 2 O4 polymer 1 1 21 ? ? ? PRD_900002 O5 O10 O 0 1 N N N -3.021 27.483 55.284 -0.902 -1.200 -0.562 GLC 2 O5 polymer 1 1 22 ? ? ? PRD_900002 O6 O11 O 0 1 N N N -0.701 27.316 53.469 1.437 -0.734 1.000 GLC 2 O6 polymer 1 1 23 ? ? ? PRD_900002 C1X C13 C 0 1 N N S 0.154 26.256 53.084 2.803 -0.847 1.406 GLA 3 C1 polymer 1 1 24 ? ? ? PRD_900002 C2X C18 C 0 1 N N R 0.351 26.230 51.596 3.442 0.544 1.440 GLA 3 C2 polymer 1 1 25 ? ? ? PRD_900002 C3X C17 C 0 1 N N S -0.969 25.971 50.928 3.424 1.140 0.029 GLA 3 C3 polymer 1 1 26 ? ? ? PRD_900002 C4X C16 C 0 1 N N R -1.547 24.666 51.376 4.153 0.189 -0.924 GLA 3 C4 polymer 1 1 27 ? ? ? PRD_900002 C5X C14 C 0 1 N N R -1.648 24.610 52.890 3.487 -1.188 -0.867 GLA 3 C5 polymer 1 1 28 ? ? ? PRD_900002 C6X C15 C 0 1 N N N -2.023 23.279 53.465 4.246 -2.161 -1.772 GLA 3 C6 polymer 1 1 29 ? ? ? PRD_900002 O2X O16 O 0 1 N N N 0.886 27.490 51.165 2.701 1.388 2.324 GLA 3 O2 polymer 1 1 30 ? ? ? PRD_900002 O3X O15 O 0 1 N N N -0.747 25.958 49.498 4.084 2.407 0.037 GLA 3 O3 polymer 1 1 31 ? ? ? PRD_900002 O4X O14 O 0 1 N N N -0.722 23.569 50.972 5.522 0.074 -0.530 GLA 3 O4 polymer 1 1 32 ? ? ? PRD_900002 O5X O12 O 0 1 N N N -0.379 24.978 53.538 3.510 -1.672 0.477 GLA 3 O5 polymer 1 1 33 ? ? ? PRD_900002 O6X O13 O 0 1 N N N -1.046 22.296 53.224 3.559 -3.413 -1.809 GLA 3 O6 polymer 1 1 34 ? ? ? PRD_900002 "H1'" H9 H 0 1 N N N -6.846 27.445 55.674 -4.449 1.475 -1.551 FRU 1 H11 polymer 1 1 35 ? ? ? PRD_900002 "H1'A" H10 H 0 0 N N N -7.179 29.089 56.317 -3.314 2.762 -2.022 FRU 1 H12 polymer 1 1 36 ? ? ? PRD_900002 "H3'" H7 H 0 1 N N N -7.055 30.438 53.426 -3.781 3.076 0.286 FRU 1 H3 polymer 1 1 37 ? ? ? PRD_900002 "H4'" H5 H 0 1 N N N -3.983 30.428 53.258 -1.150 2.834 1.756 FRU 1 H4 polymer 1 1 38 ? ? ? PRD_900002 "H5'" H4 H 0 1 N N N -5.850 28.989 51.479 -1.236 3.710 -1.187 FRU 1 H5 polymer 1 1 39 ? ? ? PRD_900002 "H6'" H2 H 0 1 N N N -3.106 28.260 52.590 0.930 2.539 0.633 FRU 1 H61 polymer 1 1 40 ? ? ? PRD_900002 "H6'A" H3 H 0 0 N N N -3.379 29.032 50.991 0.802 4.244 0.139 FRU 1 H62 polymer 1 1 41 ? ? ? PRD_900002 "HO1'" H11 H 0 0 N N N -8.994 28.225 55.077 -3.405 1.016 -3.650 FRU 1 HO1 polymer 1 1 42 ? ? ? PRD_900002 "HO3'" H8 H 0 0 N N N -6.600 31.371 55.496 -3.588 2.275 2.552 FRU 1 HO3 polymer 1 1 43 ? ? ? PRD_900002 "HO4'" H6 H 0 0 N N N -5.111 32.146 52.185 -1.217 5.185 1.184 FRU 1 HO4 polymer 1 1 44 ? ? ? PRD_900002 "HO6'" H1 H 0 0 N N N -3.389 26.668 50.861 2.278 3.103 -1.300 FRU 1 HO6 polymer 1 1 45 ? ? ? PRD_900002 H1 H12 H 0 1 N N N -4.986 27.118 55.941 -2.255 -0.506 -1.961 GLC 2 H1 polymer 1 1 46 ? ? ? PRD_900002 H2 H13 H 0 1 N N N -3.417 27.361 57.836 -2.720 -2.897 -1.573 GLC 2 H2 polymer 1 1 47 ? ? ? PRD_900002 H3 H15 H 0 1 N N N -3.320 30.222 56.842 -3.457 -2.010 1.256 GLC 2 H3 polymer 1 1 48 ? ? ? PRD_900002 H4 H17 H 0 1 N N N -1.132 28.166 57.298 -1.155 -3.746 0.247 GLC 2 H4 polymer 1 1 49 ? ? ? PRD_900002 H5 H19 H 0 1 N N N -2.033 29.208 54.596 -1.156 -0.949 1.473 GLC 2 H5 polymer 1 1 50 ? ? ? PRD_900002 H6 H21 H 0 1 N N N -0.744 26.574 55.400 1.103 -2.666 0.347 GLC 2 H61 polymer 1 1 51 ? ? ? PRD_900002 H6A H20 H 0 1 N N N 0.224 28.068 55.161 0.801 -2.378 2.077 GLC 2 H62 polymer 1 1 52 ? ? ? PRD_900002 HO2 H14 H 0 1 N N N -4.870 28.815 59.003 -4.572 -1.472 -2.073 GLC 2 HO2 polymer 1 1 53 ? ? ? PRD_900002 HO3 H16 H 0 1 N N N -1.893 30.463 58.707 -4.702 -3.860 0.392 GLC 2 HO3 polymer 1 1 54 ? ? ? PRD_900002 HO4 H18 H 0 1 N N N 0.009 29.805 56.083 -1.970 -4.273 2.433 GLC 2 HO4 polymer 1 1 55 ? ? ? PRD_900002 H1X H22 H 0 1 N N N 1.139 26.405 53.551 2.851 -1.294 2.399 GLA 3 H1 polymer 1 1 56 ? ? ? PRD_900002 H2X H31 H 0 1 N N N 1.048 25.419 51.340 4.471 0.463 1.788 GLA 3 H2 polymer 1 1 57 ? ? ? PRD_900002 H3X H29 H 0 1 N N N -1.666 26.781 51.188 2.393 1.268 -0.301 GLA 3 H3 polymer 1 1 58 ? ? ? PRD_900002 H4X H27 H 0 1 N N N -2.555 24.555 50.950 4.098 0.578 -1.941 GLA 3 H4 polymer 1 1 59 ? ? ? PRD_900002 H5X H23 H 0 1 N N N -2.413 25.337 53.199 2.454 -1.107 -1.207 GLA 3 H5 polymer 1 1 60 ? ? ? PRD_900002 H6X H25 H 0 1 N N N -2.971 22.953 53.012 5.253 -2.310 -1.381 GLA 3 H61 polymer 1 1 61 ? ? ? PRD_900002 H6XA H24 H 0 0 N N N -2.154 23.388 54.552 4.305 -1.749 -2.780 GLA 3 H62 polymer 1 1 62 ? ? ? PRD_900002 HO2X H32 H 0 0 N N N 1.012 27.476 50.223 2.667 1.068 3.236 GLA 3 HO2 polymer 1 1 63 ? ? ? PRD_900002 HO3X H30 H 0 0 N N N -0.380 26.791 49.226 3.716 3.039 0.671 GLA 3 HO3 polymer 1 1 64 ? ? ? PRD_900002 HO4X H28 H 0 0 N N N -0.634 23.570 50.026 6.006 0.910 -0.543 GLA 3 HO4 polymer 1 1 65 ? ? ? PRD_900002 HO6X H26 H 0 0 N N N -1.325 21.472 53.605 3.985 -4.079 -2.365 GLA 3 HO6 polymer 1 1 66 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_900002 "O6'" "C6'" SING N N 1 PRD_900002 "C6'" "C5'" SING N N 2 PRD_900002 "C5'" "O2'" SING N N 3 PRD_900002 "C5'" "C4'" SING N N 4 PRD_900002 "C4'" "O4'" SING N N 5 PRD_900002 "C4'" "C3'" SING N N 6 PRD_900002 "C3'" "C2'" SING N N 7 PRD_900002 "C3'" "O3'" SING N N 8 PRD_900002 "O2'" "C2'" SING N N 9 PRD_900002 "C2'" "C1'" SING N N 10 PRD_900002 "C2'" O1 SING N N 11 PRD_900002 "C1'" "O1'" SING N N 12 PRD_900002 O1 C1 SING N N 13 PRD_900002 C1 O5 SING N N 14 PRD_900002 C1 C2 SING N N 15 PRD_900002 C2 O2 SING N N 16 PRD_900002 C2 C3 SING N N 17 PRD_900002 C3 O3 SING N N 18 PRD_900002 C3 C4 SING N N 19 PRD_900002 C4 C5 SING N N 20 PRD_900002 C4 O4 SING N N 21 PRD_900002 C5 O5 SING N N 22 PRD_900002 C5 C6 SING N N 23 PRD_900002 C6 O6 SING N N 24 PRD_900002 O6 C1X SING N N 25 PRD_900002 C1X O5X SING N N 26 PRD_900002 C1X C2X SING N N 27 PRD_900002 O5X C5X SING N N 28 PRD_900002 C5X C6X SING N N 29 PRD_900002 C5X C4X SING N N 30 PRD_900002 C6X O6X SING N N 31 PRD_900002 C4X O4X SING N N 32 PRD_900002 C4X C3X SING N N 33 PRD_900002 C3X O3X SING N N 34 PRD_900002 C3X C2X SING N N 35 PRD_900002 C2X O2X SING N N 36 PRD_900002 "O6'" "HO6'" SING N N 37 PRD_900002 "C6'" "H6'" SING N N 38 PRD_900002 "C6'" "H6'A" SING N N 39 PRD_900002 "C5'" "H5'" SING N N 40 PRD_900002 "C4'" "H4'" SING N N 41 PRD_900002 "O4'" "HO4'" SING N N 42 PRD_900002 "C3'" "H3'" SING N N 43 PRD_900002 "O3'" "HO3'" SING N N 44 PRD_900002 "C1'" "H1'" SING N N 45 PRD_900002 "C1'" "H1'A" SING N N 46 PRD_900002 "O1'" "HO1'" SING N N 47 PRD_900002 C1 H1 SING N N 48 PRD_900002 C2 H2 SING N N 49 PRD_900002 O2 HO2 SING N N 50 PRD_900002 C3 H3 SING N N 51 PRD_900002 O3 HO3 SING N N 52 PRD_900002 C4 H4 SING N N 53 PRD_900002 O4 HO4 SING N N 54 PRD_900002 C5 H5 SING N N 55 PRD_900002 C6 H6A SING N N 56 PRD_900002 C6 H6 SING N N 57 PRD_900002 C1X H1X SING N N 58 PRD_900002 C5X H5X SING N N 59 PRD_900002 C6X H6XA SING N N 60 PRD_900002 C6X H6X SING N N 61 PRD_900002 O6X HO6X SING N N 62 PRD_900002 C4X H4X SING N N 63 PRD_900002 O4X HO4X SING N N 64 PRD_900002 C3X H3X SING N N 65 PRD_900002 O3X HO3X SING N N 66 PRD_900002 C2X H2X SING N N 67 PRD_900002 O2X HO2X SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_900002 SMILES ACDLabs 12.01 "O2C(COC1OC(CO)C(O)C(O)C1O)C(O)C(O)C(O)C2OC3(OC(C(O)C3O)CO)CO" PRD_900002 InChI InChI 1.03 ;InChI=1S/C18H32O16/c19-1-5-8(22)11(25)13(27)16(31-5)30-3-7-9(23)12(26)14(28)17(32-7)34-18(4-21)15(29)10(24)6(2-20)33-18 /h5-17,19-29H,1-4H2/t5-,6-,7-,8+,9-,10-,11+,12+,13-,14-,15+,16+,17-,18+/m1/s1 ; PRD_900002 InChIKey InChI 1.03 MUPFEKGTMRGPLJ-ZQSKZDJDSA-N PRD_900002 SMILES_CANONICAL CACTVS 3.370 "OC[C@H]1O[C@H](OC[C@H]2O[C@H](O[C@]3(CO)O[C@H](CO)[C@@H](O)[C@@H]3O)[C@H](O)[C@@H](O)[C@@H]2O)[C@H](O)[C@@H](O)[C@H]1O" PRD_900002 SMILES CACTVS 3.370 "OC[CH]1O[CH](OC[CH]2O[CH](O[C]3(CO)O[CH](CO)[CH](O)[CH]3O)[CH](O)[CH](O)[CH]2O)[CH](O)[CH](O)[CH]1O" PRD_900002 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 ;C([C@@H]1[C@@H]([C@@H]([C@H]([C@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@H](O2)O[C@]3([C@H]([C@@H]([C@H](O3)CO)O)O)CO)O)O)O )O)O)O)O ; PRD_900002 SMILES "OpenEye OEToolkits" 1.7.6 "C(C1C(C(C(C(O1)OCC2C(C(C(C(O2)OC3(C(C(C(O3)CO)O)O)CO)O)O)O)O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_900002 "SYSTEMATIC NAME" ACDLabs 12.01 "beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside" PRD_900002 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 ;(2S,3R,4S,5R,6R)-2-[[(2R,3S,4S,5R,6R)-6-[(2S,3S,4S,5R)-2,5-bis(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]oxy-3,4,5-tr is(oxidanyl)oxan-2-yl]methoxy]-6-(hydroxymethyl)oxane-3,4,5-triol ; #