data_PRDCC_900005
#
_chem_comp.id PRD_900005
_chem_comp.name CELLOBIOSE
_chem_comp.type saccharide
_chem_comp.formula "C12 H22 O11"
_chem_comp.pdbx_release_status REF_ONLY
_chem_comp.formula_weight 342.296
_chem_comp.pdbx_type ?
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge ?
_chem_comp.pdbx_initial_date ?
_chem_comp.pdbx_modified_date ?
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ?
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag ?
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag ?
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_pcm ?
_chem_comp.pdbx_processing_site ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_residue_numbering
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_polymer_type
_chem_comp_atom.pdbx_ref_id
_chem_comp_atom.pdbx_component_id
_chem_comp_atom.pdbx_ordinal
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
PRD_900005 "C2'" C8 C 0 1 N N R -10.916 28.981 -0.490 2.814 1.546 0.080 BGC 1 C2 polymer 1 1 1 ? ? ?
PRD_900005 "C3'" C9 C 0 1 N N R -12.335 29.080 -0.962 1.548 0.904 0.656 BGC 1 C3 polymer 1 1 2 ? ? ?
PRD_900005 "C4'" C10 C 0 1 N N S -12.981 27.733 -1.218 1.289 -0.424 -0.063 BGC 1 C4 polymer 1 1 3 ? ? ?
PRD_900005 "C5'" C11 C 0 1 N N R -12.762 26.794 -0.045 2.518 -1.324 0.087 BGC 1 C5 polymer 1 1 4 ? ? ?
PRD_900005 "C6'" C12 C 0 1 N N N -13.264 25.390 -0.354 2.291 -2.629 -0.679 BGC 1 C6 polymer 1 1 5 ? ? ?
PRD_900005 "C1'" C7 C 0 1 N N R -10.931 28.009 0.697 3.983 0.569 0.225 BGC 1 C1 polymer 1 1 6 ? ? ?
PRD_900005 "O1'" O6 O 0 1 N N N -9.613 27.831 1.195 5.156 1.138 -0.361 BGC 1 O1 polymer 1 1 7 ? ? ?
PRD_900005 "O2'" O7 O 0 1 N N N -10.435 30.199 0.044 3.105 2.750 0.793 BGC 1 O2 polymer 1 1 8 ? ? ?
PRD_900005 "O3'" O8 O 0 1 N N N -12.327 29.866 -2.158 0.436 1.780 0.460 BGC 1 O3 polymer 1 1 9 ? ? ?
PRD_900005 "O4'" O9 O 0 1 N N N -14.369 27.912 -1.486 0.152 -1.066 0.515 BGC 1 O4 polymer 1 1 10 ? ? ?
PRD_900005 "O5'" O10 O 0 1 N N N -11.368 26.733 0.279 3.665 -0.656 -0.440 BGC 1 O5 polymer 1 1 11 ? ? ?
PRD_900005 "O6'" O11 O 0 1 N N N -12.590 24.885 -1.510 3.386 -3.517 -0.443 BGC 1 O6 polymer 1 1 12 ? ? ?
PRD_900005 C2 C2 C 0 1 N N R -16.334 27.417 -2.739 -2.217 -1.551 0.512 BGC 2 C2 polymer 1 1 13 ? ? ?
PRD_900005 C3 C3 C 0 1 N N S -16.815 27.282 -4.153 -3.551 -1.127 -0.109 BGC 2 C3 polymer 1 1 14 ? ? ?
PRD_900005 C4 C4 C 0 1 N N S -16.370 28.429 -5.064 -3.753 0.375 0.116 BGC 2 C4 polymer 1 1 15 ? ? ?
PRD_900005 C5 C5 C 0 1 N N R -14.872 28.421 -4.943 -2.566 1.136 -0.481 BGC 2 C5 polymer 1 1 16 ? ? ?
PRD_900005 C6 C6 C 0 1 N N N -14.290 29.494 -5.853 -2.730 2.632 -0.207 BGC 2 C6 polymer 1 1 17 ? ? ?
PRD_900005 C1 C1 C 0 1 N N S -14.807 27.561 -2.789 -1.090 -0.716 -0.100 BGC 2 C1 polymer 1 1 18 ? ? ?
PRD_900005 O2 O1 O 0 1 N N N -16.607 26.276 -1.998 -1.985 -2.936 0.245 BGC 2 O2 polymer 1 1 19 ? ? ?
PRD_900005 O3 O2 O 0 1 N N N -18.235 27.263 -3.990 -4.618 -1.850 0.509 BGC 2 O3 polymer 1 1 20 ? ? ?
PRD_900005 O4 O3 O 0 1 N N N -16.874 28.044 -6.319 -4.960 0.796 -0.522 BGC 2 O4 polymer 1 1 21 ? ? ?
PRD_900005 O5 O4 O 0 1 N N N -14.439 28.658 -3.621 -1.354 0.672 0.118 BGC 2 O5 polymer 1 1 22 ? ? ?
PRD_900005 O6 O5 O 0 1 N N N -14.813 30.790 -5.511 -1.685 3.353 -0.863 BGC 2 O6 polymer 1 1 23 ? ? ?
PRD_900005 "H2'" H13 H 0 1 N N N -10.266 28.595 -1.289 2.659 1.775 -0.975 BGC 1 H2 polymer 1 1 24 ? ? ?
PRD_900005 "H3'" H14 H 0 1 N N N -12.921 29.600 -0.190 1.684 0.721 1.722 BGC 1 H3 polymer 1 1 25 ? ? ?
PRD_900005 "H4'" H15 H 0 1 N N N -12.498 27.289 -2.101 1.104 -0.235 -1.121 BGC 1 H4 polymer 1 1 26 ? ? ?
PRD_900005 "H5'" H16 H 0 1 N N N -13.324 27.180 0.818 2.679 -1.546 1.143 BGC 1 H5 polymer 1 1 27 ? ? ?
PRD_900005 "H6'1" H18 H 0 0 N N N -13.063 24.732 0.504 2.219 -2.416 -1.745 BGC 1 H6C1 polymer 1 1 28 ? ? ?
PRD_900005 "H6'2" H17 H 0 0 N N N -14.347 25.422 -0.546 1.366 -3.095 -0.338 BGC 1 H6C2 polymer 1 1 29 ? ? ?
PRD_900005 "H1'" H12 H 0 1 N N N -11.591 28.410 1.481 4.164 0.373 1.282 BGC 1 H1 polymer 1 1 30 ? ? ?
PRD_900005 "HO1'" H19 H 0 0 N N N -9.630 27.228 1.929 5.938 0.573 -0.305 BGC 1 HA polymer 1 1 31 ? ? ?
PRD_900005 "HO2'" H20 H 0 0 N N N -9.536 30.087 0.329 3.899 3.207 0.483 BGC 1 HB polymer 1 1 32 ? ? ?
PRD_900005 "HO3'" H21 H 0 0 N N N -11.920 30.706 -1.983 0.536 2.643 0.884 BGC 1 HC polymer 1 1 33 ? ? ?
PRD_900005 "HO6'" H22 H 0 0 N N N -12.903 24.009 -1.702 3.309 -4.366 -0.899 BGC 1 H6 polymer 1 1 34 ? ? ?
PRD_900005 H2 H2 H 0 1 N N N -16.772 28.314 -2.278 -2.247 -1.388 1.589 BGC 2 H2 polymer 1 1 35 ? ? ?
PRD_900005 H3 H3 H 0 1 N N N -16.461 26.329 -4.573 -3.539 -1.339 -1.178 BGC 2 H3 polymer 1 1 36 ? ? ?
PRD_900005 H4 H4 H 0 1 N N N -16.789 29.385 -4.716 -3.815 0.577 1.185 BGC 2 H4 polymer 1 1 37 ? ? ?
PRD_900005 H5 H5 H 0 1 N N N -14.501 27.443 -5.284 -2.528 0.965 -1.557 BGC 2 H5 polymer 1 1 38 ? ? ?
PRD_900005 H61 H7 H 0 1 N N N -13.196 29.506 -5.743 -2.678 2.813 0.866 BGC 2 H6C1 polymer 1 1 39 ? ? ?
PRD_900005 H62 H6 H 0 1 N N N -14.551 29.263 -6.896 -3.696 2.967 -0.586 BGC 2 H6C2 polymer 1 1 40 ? ? ?
PRD_900005 H1 H1 H 0 1 N N N -14.351 26.621 -3.133 -1.033 -0.911 -1.171 BGC 2 H1 polymer 1 1 41 ? ? ?
PRD_900005 HO2 H8 H 0 1 N N N -16.291 26.392 -1.109 -1.153 -3.271 0.606 BGC 2 HB polymer 1 1 42 ? ? ?
PRD_900005 HO3 H9 H 0 1 N N N -18.479 26.542 -3.421 -4.550 -2.810 0.412 BGC 2 HC polymer 1 1 43 ? ? ?
PRD_900005 HO4 H10 H 0 1 N N N -17.823 28.078 -6.304 -5.754 0.353 -0.192 BGC 2 HD polymer 1 1 44 ? ? ?
PRD_900005 HO6 H11 H 0 1 N N N -14.439 31.445 -6.088 -1.726 4.311 -0.733 BGC 2 H6 polymer 1 1 45 ? ? ?
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PRD_900005 O4 C4 SING N N 1
PRD_900005 C6 O6 SING N N 2
PRD_900005 C6 C5 SING N N 3
PRD_900005 C4 C5 SING N N 4
PRD_900005 C4 C3 SING N N 5
PRD_900005 C5 O5 SING N N 6
PRD_900005 C3 O3 SING N N 7
PRD_900005 C3 C2 SING N N 8
PRD_900005 O5 C1 SING N N 9
PRD_900005 C1 C2 SING N N 10
PRD_900005 C1 "O4'" SING N N 11
PRD_900005 C2 O2 SING N N 12
PRD_900005 "O3'" "C3'" SING N N 13
PRD_900005 "O6'" "C6'" SING N N 14
PRD_900005 "O4'" "C4'" SING N N 15
PRD_900005 "C4'" "C3'" SING N N 16
PRD_900005 "C4'" "C5'" SING N N 17
PRD_900005 "C3'" "C2'" SING N N 18
PRD_900005 "C2'" "O2'" SING N N 19
PRD_900005 "C2'" "C1'" SING N N 20
PRD_900005 "C6'" "C5'" SING N N 21
PRD_900005 "C5'" "O5'" SING N N 22
PRD_900005 "O5'" "C1'" SING N N 23
PRD_900005 "C1'" "O1'" SING N N 24
PRD_900005 C1 H1 SING N N 25
PRD_900005 C2 H2 SING N N 26
PRD_900005 C3 H3 SING N N 27
PRD_900005 C4 H4 SING N N 28
PRD_900005 C5 H5 SING N N 29
PRD_900005 C6 H62 SING N N 30
PRD_900005 C6 H61 SING N N 31
PRD_900005 O2 HO2 SING N N 32
PRD_900005 O3 HO3 SING N N 33
PRD_900005 O4 HO4 SING N N 34
PRD_900005 O6 HO6 SING N N 35
PRD_900005 "C1'" "H1'" SING N N 36
PRD_900005 "C2'" "H2'" SING N N 37
PRD_900005 "C3'" "H3'" SING N N 38
PRD_900005 "C4'" "H4'" SING N N 39
PRD_900005 "C5'" "H5'" SING N N 40
PRD_900005 "C6'" "H6'2" SING N N 41
PRD_900005 "C6'" "H6'1" SING N N 42
PRD_900005 "O1'" "HO1'" SING N N 43
PRD_900005 "O2'" "HO2'" SING N N 44
PRD_900005 "O3'" "HO3'" SING N N 45
PRD_900005 "O6'" "HO6'" SING N N 46
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PRD_900005 SMILES ACDLabs 12.01 "C1(C(O)C(O)C(C(O1)CO)O)OC2C(C(C(O)OC2CO)O)O"
PRD_900005 InChI InChI 1.03
;InChI=1S/C12H22O11/c13-1-3-5(15)6(16)9(19)12(22-3)23-10-4(2-14)21-11(20)8(18)7(10)17/h3-20H,1-2H2/t3-,4-,5-,6+,7-,8-,9-
,10-,11-,12+/m1/s1
;
PRD_900005 InChIKey InChI 1.03 GUBGYTABKSRVRQ-QRZGKKJRSA-N
PRD_900005 SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H](O[C@H]2[C@H](O)[C@@H](O)[C@H](O)O[C@@H]2CO)[C@H](O)[C@@H](O)[C@@H]1O"
PRD_900005 SMILES CACTVS 3.385 "OC[CH]1O[CH](O[CH]2[CH](O)[CH](O)[CH](O)O[CH]2CO)[CH](O)[CH](O)[CH]1O"
PRD_900005 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O[C@@H]2[C@H](O[C@H]([C@@H]([C@H]2O)O)O)CO)O)O)O)O"
PRD_900005 SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)OC2C(OC(C(C2O)O)O)CO)O)O)O)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PRD_900005 "SYSTEMATIC NAME" ACDLabs 12.01 4-O-beta-D-glucopyranosyl-beta-D-glucopyranose
PRD_900005 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7
;(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{S},4~{R},5~{R},6~{R})-2-(hydroxymethyl)-4,5,6-tris(oxida
nyl)oxan-3-yl]oxy-oxane-3,4,5-triol
;
#