data_PRDCC_900013 # _chem_comp.id PRD_900013 _chem_comp.name "SUCROSE OCTASULFATE" _chem_comp.type saccharide _chem_comp.formula "C12 H22 O35 S8" _chem_comp.pdbx_release_status REF_ONLY _chem_comp.formula_weight 982.802 _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_pcm ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_900013 C1 C1 C 0 1 N N R 26.841 18.534 7.473 -0.367 1.061 -1.199 C1 GU4 1 1 1 polymer 1 ? ? ? PRD_900013 O5 O5 O 0 1 N N N 26.231 18.763 6.215 0.988 1.142 -0.761 O5 GU4 2 1 1 polymer 1 ? ? ? PRD_900013 C5 C5 C 0 1 N N R 24.836 18.582 6.300 1.533 -0.174 -0.799 C5 GU4 3 1 1 polymer 1 ? ? ? PRD_900013 C6 C6 C 0 1 N N N 24.348 18.604 4.852 2.923 -0.168 -0.158 C6 GU4 4 1 1 polymer 1 ? ? ? PRD_900013 O6 O6 O 0 1 N N N 23.148 19.351 4.638 2.849 0.440 1.132 O6 GU4 5 1 1 polymer 1 ? ? ? PRD_900013 S6 S6 S 0 1 N N N 21.957 18.747 4.023 4.209 1.069 1.400 S6 GU4 6 1 1 polymer 1 ? ? ? PRD_900013 O62 O62 O 0 1 N N N 21.616 17.498 4.655 5.167 0.082 1.045 O22 GU4 7 1 1 polymer 1 ? ? ? PRD_900013 O63 O63 O 0 1 N N N 22.139 18.501 2.624 4.102 1.691 2.673 O23 GU4 8 1 1 polymer 1 ? ? ? PRD_900013 O64 O64 O 0 1 N N N 20.881 19.700 4.168 4.391 2.202 0.400 O21 GU4 9 1 1 polymer 1 ? ? ? PRD_900013 C4 C4 C 0 1 N N R 24.244 19.526 7.374 1.645 -0.647 -2.250 C4 GU4 10 1 1 polymer 1 ? ? ? PRD_900013 O4 O4 O 0 1 N N N 23.031 18.921 7.845 2.218 -1.955 -2.284 O4 GU4 11 1 1 polymer 1 ? ? ? PRD_900013 S4 S4 S 0 1 N N N 21.988 19.779 8.322 3.297 -1.935 -3.356 S4 GU4 12 1 1 polymer 1 ? ? ? PRD_900013 O42 O42 O 0 1 N N N 20.823 19.501 7.551 3.836 -3.250 -3.387 O25 GU4 13 1 1 polymer 1 ? ? ? PRD_900013 O43 O43 O 0 1 N N N 22.402 21.106 8.051 2.727 -1.254 -4.465 O26 GU4 14 1 1 polymer 1 ? ? ? PRD_900013 O44 O44 O 0 1 N N N 21.660 19.571 9.717 4.421 -1.040 -2.855 O24 GU4 15 1 1 polymer 1 ? ? ? PRD_900013 C3 C3 C 0 1 N N S 25.083 19.559 8.667 0.244 -0.684 -2.872 C3 GU4 16 1 1 polymer 1 ? ? ? PRD_900013 O3 O3 O 0 1 N N N 24.625 20.600 9.569 0.343 -0.980 -4.266 O3 GU4 17 1 1 polymer 1 ? ? ? PRD_900013 S3 S3 S 0 1 N N N 24.423 20.401 11.027 -0.394 -2.291 -4.492 S3 GU4 18 1 1 polymer 1 ? ? ? PRD_900013 O32 O32 O 0 1 N N N 25.369 19.468 11.625 -0.281 -2.564 -5.882 O28 GU4 19 1 1 polymer 1 ? ? ? PRD_900013 O34 O34 O 0 1 N N N 23.104 19.849 11.285 -1.873 -2.030 -4.241 O29 GU4 20 1 1 polymer 1 ? ? ? PRD_900013 O33 O33 O 0 1 N N N 24.555 21.708 11.676 0.027 -3.156 -3.446 O27 GU4 21 1 1 polymer 1 ? ? ? PRD_900013 C2 C2 C 0 1 N N R 26.535 19.757 8.303 -0.411 0.687 -2.682 C2 GU4 22 1 1 polymer 1 ? ? ? PRD_900013 O2 O2 O 0 1 N N N 27.444 19.819 9.457 -1.770 0.635 -3.122 O2 GU4 23 1 1 polymer 1 ? ? ? PRD_900013 S2 S2 S 0 1 N N N 27.866 21.089 10.105 -2.008 1.879 -3.964 S2 GU4 24 1 1 polymer 1 ? ? ? PRD_900013 O22 O22 O 0 1 N N N 28.175 20.795 11.505 -3.377 1.833 -4.343 O11 GU4 25 1 1 polymer 1 ? ? ? PRD_900013 O23 O23 O 0 1 N N N 26.807 22.099 10.024 -1.385 2.946 -3.262 O12 GU4 26 1 1 polymer 1 ? ? ? PRD_900013 O24 O24 O 0 1 N N N 29.041 21.652 9.468 -1.217 1.715 -5.254 O10 GU4 27 1 1 polymer 1 ? ? ? PRD_900013 C11 C11 C 0 1 N N N 27.673 15.512 8.914 -1.501 2.079 0.826 C1 YYJ 28 2 1 polymer 1 ? ? ? PRD_900013 C12 C12 C 0 1 N N S 26.705 16.020 7.811 -1.198 0.581 0.884 C2 YYJ 29 2 1 polymer 1 ? ? ? PRD_900013 C13 C13 C 0 1 N N S 25.560 15.045 7.686 -2.339 -0.155 1.612 C3 YYJ 30 2 1 polymer 1 ? ? ? PRD_900013 C14 C14 C 0 1 N N R 25.425 14.695 6.238 -1.654 -0.769 2.862 C4 YYJ 31 2 1 polymer 1 ? ? ? PRD_900013 C15 C15 C 0 1 N N R 26.516 15.394 5.487 -0.386 0.111 3.001 C5 YYJ 32 2 1 polymer 1 ? ? ? PRD_900013 C16 C16 C 0 1 N N N 25.910 16.542 4.651 0.714 -0.639 3.753 C6 YYJ 33 2 1 polymer 1 ? ? ? PRD_900013 O81 O81 O 0 1 N N N 27.021 15.357 10.221 -0.309 2.793 0.492 O1 YYJ 34 2 1 polymer 1 ? ? ? PRD_900013 O84 O84 O 0 1 N N N 26.736 17.675 10.546 -0.464 4.831 1.849 O1S1 YYJ 35 2 1 polymer 1 ? ? ? PRD_900013 O94 O94 O 0 1 N N N 23.699 14.554 9.690 -4.464 0.380 -0.245 O1S3 YYJ 36 2 1 polymer 1 ? ? ? PRD_900013 O74 O74 O 0 1 N N N 23.916 12.968 7.974 -1.875 -2.875 4.826 O1S4 YYJ 37 2 1 polymer 1 ? ? ? PRD_900013 O54 O54 O 0 1 N N N 22.647 16.309 3.067 3.417 -1.694 3.582 O1S6 YYJ 38 2 1 polymer 1 ? ? ? PRD_900013 O1 O1 O 0 1 N N N 26.260 17.366 8.096 -1.052 0.063 -0.439 O2 YYJ 39 2 1 polymer 1 ? ? ? PRD_900013 O82 O82 O 0 1 N N N 28.475 16.538 11.656 0.303 4.890 -0.367 O2S1 YYJ 40 2 1 polymer 1 ? ? ? PRD_900013 O92 O92 O 0 1 N N N 22.635 16.581 9.132 -4.883 -1.928 -0.191 O2S3 YYJ 41 2 1 polymer 1 ? ? ? PRD_900013 O72 O72 O 0 1 N N N 23.901 11.403 6.163 -3.913 -1.873 5.420 O2S4 YYJ 42 2 1 polymer 1 ? ? ? PRD_900013 O52 O52 O 0 1 N N N 23.205 15.997 5.298 4.045 0.246 4.744 O2S6 YYJ 43 2 1 polymer 1 ? ? ? PRD_900013 O91 O91 O 0 1 N N N 24.351 15.731 7.837 -2.881 -1.185 0.783 O3 YYJ 44 2 1 polymer 1 ? ? ? PRD_900013 O83 O83 O 0 1 N N N 26.171 16.256 12.304 -2.080 4.311 0.228 O3S1 YYJ 45 2 1 polymer 1 ? ? ? PRD_900013 O93 O93 O 0 1 N N N 24.828 16.672 9.894 -4.834 -0.508 1.895 O3S3 YYJ 46 2 1 polymer 1 ? ? ? PRD_900013 O73 O73 O 0 1 N N N 23.009 13.605 5.931 -3.390 -2.589 3.056 O3S4 YYJ 47 2 1 polymer 1 ? ? ? PRD_900013 O53 O53 O 0 1 N N N 23.500 14.253 3.684 2.269 -1.333 5.598 O3S6 YYJ 48 2 1 polymer 1 ? ? ? PRD_900013 O71 O71 O 0 1 N N N 25.344 13.283 6.085 -2.491 -0.644 4.013 O4 YYJ 49 2 1 polymer 1 ? ? ? PRD_900013 O10 O10 O 0 1 N N N 27.366 15.959 6.517 0.007 0.354 1.634 O5 YYJ 50 2 1 polymer 1 ? ? ? PRD_900013 O51 O51 O 0 1 N N N 24.946 16.114 3.639 1.872 0.191 3.858 O6 YYJ 51 2 1 polymer 1 ? ? ? PRD_900013 S11 S11 S 0 1 N N N 27.104 16.443 11.199 -0.677 4.270 0.451 S1 YYJ 52 2 1 polymer 1 ? ? ? PRD_900013 S12 S12 S 0 1 N N N 23.890 15.875 9.140 -4.361 -0.876 0.607 S3 YYJ 53 2 1 polymer 1 ? ? ? PRD_900013 S13 S13 S 0 1 N N N 24.053 12.804 6.533 -3.035 -2.033 4.315 S4 YYJ 54 2 1 polymer 1 ? ? ? PRD_900013 S14 S14 S 0 1 N N N 23.585 15.677 3.946 2.942 -0.630 4.562 S6 YYJ 55 2 1 polymer 1 ? ? ? PRD_900013 H1 H1 H 0 1 N N N 27.938 18.360 7.374 -0.853 2.025 -1.053 H1 GU4 56 1 1 polymer 1 ? ? ? PRD_900013 H5 H5 H 0 1 N N N 24.464 17.611 6.704 0.882 -0.852 -0.246 H5 GU4 57 1 1 polymer 1 ? ? ? PRD_900013 H61 1H6 H 0 1 N N N 25.156 18.968 4.176 3.610 0.397 -0.787 H61 GU4 58 1 1 polymer 1 ? ? ? PRD_900013 H62 2H6 H 0 1 N N N 24.230 17.564 4.467 3.281 -1.192 -0.056 H62 GU4 59 1 1 polymer 1 ? ? ? PRD_900013 H4 H4 H 0 1 N N N 24.162 20.533 6.902 2.275 0.041 -2.812 H4 GU4 60 1 1 polymer 1 ? ? ? PRD_900013 H3 H3 H 0 1 N N N 24.963 18.589 9.204 -0.356 -1.448 -2.378 H3 GU4 61 1 1 polymer 1 ? ? ? PRD_900013 H2 H2 H 0 1 N N N 26.687 20.733 7.786 0.130 1.434 -3.263 H2 GU4 62 1 1 polymer 1 ? ? ? PRD_900013 H64 H64 H 0 1 N N N 20.111 19.309 3.770 5.257 2.594 0.578 HO21 GU4 63 1 1 polymer 1 ? ? ? PRD_900013 H44 H44 H 0 1 N N N 20.968 20.140 10.033 5.101 -1.033 -3.542 HO24 GU4 64 1 1 polymer 1 ? ? ? PRD_900013 H34 H34 H 0 1 N N N 22.974 19.721 12.217 -2.333 -2.868 -4.386 HO29 GU4 65 1 1 polymer 1 ? ? ? PRD_900013 H24 H24 H 0 1 N N N 29.310 22.463 9.882 -1.375 2.509 -5.782 HO10 GU4 66 1 1 polymer 1 ? ? ? PRD_900013 H111 1H11 H 0 0 N N N 28.170 14.564 8.601 -2.261 2.267 0.069 H11 YYJ 67 2 1 polymer 1 ? ? ? PRD_900013 H112 2H11 H 0 0 N N N 28.569 16.170 8.991 -1.865 2.415 1.798 H12 YYJ 68 2 1 polymer 1 ? ? ? PRD_900013 H84 H84 H 0 1 N N N 26.789 18.379 11.180 -0.700 5.768 1.814 H1S1 YYJ 69 2 1 polymer 1 ? ? ? PRD_900013 H94 H94 H 0 1 N N N 23.383 14.652 10.580 -5.406 0.569 -0.352 H1S3 YYJ 70 2 1 polymer 1 ? ? ? PRD_900013 H74 H74 H 0 1 N N N 23.069 12.653 8.267 -2.229 -3.755 5.015 H1S4 YYJ 71 2 1 polymer 1 ? ? ? PRD_900013 H54 H54 H 0 1 N N N 21.762 16.025 3.266 4.037 -2.259 4.062 H1S6 YYJ 72 2 1 polymer 1 ? ? ? PRD_900013 H13 H13 H 0 1 N N N 25.741 14.211 8.403 -3.120 0.543 1.910 H3 YYJ 73 2 1 polymer 1 ? ? ? PRD_900013 H14 H14 H 0 1 N N N 24.472 15.060 5.788 -1.387 -1.811 2.688 H4 YYJ 74 2 1 polymer 1 ? ? ? PRD_900013 H15 H15 H 0 1 N N N 27.065 14.709 4.798 -0.623 1.048 3.505 H5 YYJ 75 2 1 polymer 1 ? ? ? PRD_900013 H161 1H16 H 0 0 N N N 25.455 17.310 5.319 0.361 -0.898 4.751 H61 YYJ 76 2 1 polymer 1 ? ? ? PRD_900013 H162 2H16 H 0 0 N N N 26.719 17.149 4.183 0.969 -1.550 3.210 H62 YYJ 77 2 1 polymer 1 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_900013 C1 C2 SING N N 1 PRD_900013 C1 O1 SING N N 2 PRD_900013 C1 O5 SING N N 3 PRD_900013 C1 H1 SING N N 4 PRD_900013 C2 C3 SING N N 5 PRD_900013 C2 O2 SING N N 6 PRD_900013 C2 H2 SING N N 7 PRD_900013 C3 C4 SING N N 8 PRD_900013 C3 O3 SING N N 9 PRD_900013 C3 H3 SING N N 10 PRD_900013 C4 C5 SING N N 11 PRD_900013 C4 O4 SING N N 12 PRD_900013 C4 H4 SING N N 13 PRD_900013 C5 C6 SING N N 14 PRD_900013 C5 O5 SING N N 15 PRD_900013 C5 H5 SING N N 16 PRD_900013 C6 O6 SING N N 17 PRD_900013 C6 H61 SING N N 18 PRD_900013 C6 H62 SING N N 19 PRD_900013 C11 C12 SING N N 20 PRD_900013 C11 O81 SING N N 21 PRD_900013 C11 H111 SING N N 22 PRD_900013 C11 H112 SING N N 23 PRD_900013 C12 C13 SING N N 24 PRD_900013 C12 O1 SING N N 25 PRD_900013 C12 O10 SING N N 26 PRD_900013 C13 C14 SING N N 27 PRD_900013 C13 O91 SING N N 28 PRD_900013 C13 H13 SING N N 29 PRD_900013 C14 C15 SING N N 30 PRD_900013 C14 O71 SING N N 31 PRD_900013 C14 H14 SING N N 32 PRD_900013 C15 C16 SING N N 33 PRD_900013 C15 O10 SING N N 34 PRD_900013 C15 H15 SING N N 35 PRD_900013 C16 O51 SING N N 36 PRD_900013 C16 H161 SING N N 37 PRD_900013 C16 H162 SING N N 38 PRD_900013 O2 S2 SING N N 39 PRD_900013 O22 S2 DOUB N N 40 PRD_900013 O23 S2 DOUB N N 41 PRD_900013 O24 S2 SING N N 42 PRD_900013 O24 H24 SING N N 43 PRD_900013 O3 S3 SING N N 44 PRD_900013 O32 S3 DOUB N N 45 PRD_900013 O33 S3 DOUB N N 46 PRD_900013 O34 S3 SING N N 47 PRD_900013 O34 H34 SING N N 48 PRD_900013 O4 S4 SING N N 49 PRD_900013 O42 S4 DOUB N N 50 PRD_900013 O43 S4 DOUB N N 51 PRD_900013 O44 S4 SING N N 52 PRD_900013 O44 H44 SING N N 53 PRD_900013 O6 S6 SING N N 54 PRD_900013 O62 S6 DOUB N N 55 PRD_900013 O63 S6 DOUB N N 56 PRD_900013 O64 S6 SING N N 57 PRD_900013 O64 H64 SING N N 58 PRD_900013 O51 S14 SING N N 59 PRD_900013 O52 S14 DOUB N N 60 PRD_900013 O53 S14 DOUB N N 61 PRD_900013 O54 S14 SING N N 62 PRD_900013 O54 H54 SING N N 63 PRD_900013 O71 S13 SING N N 64 PRD_900013 O72 S13 DOUB N N 65 PRD_900013 O73 S13 DOUB N N 66 PRD_900013 O74 S13 SING N N 67 PRD_900013 O74 H74 SING N N 68 PRD_900013 O81 S11 SING N N 69 PRD_900013 O82 S11 DOUB N N 70 PRD_900013 O83 S11 DOUB N N 71 PRD_900013 O84 S11 SING N N 72 PRD_900013 O84 H84 SING N N 73 PRD_900013 O91 S12 SING N N 74 PRD_900013 O92 S12 DOUB N N 75 PRD_900013 O93 S12 DOUB N N 76 PRD_900013 O94 S12 SING N N 77 PRD_900013 O94 H94 SING N N 78 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_900013 SMILES ACDLabs 10.04 ;O=S(=O)(O)OC1C(OC(COS(=O)(=O)O)C(OS(=O)(=O)O)C1OS(=O)(=O)O)OC2(OC(C(OS(=O)(=O)O)C2OS(=O)(=O)O)COS(=O)(=O)O)COS(=O)(=O)O ; PRD_900013 SMILES_CANONICAL CACTVS 3.341 ;O[S](=O)(=O)OC[C@H]1O[C@H](O[C@]2(CO[S](O)(=O)=O)O[C@H](CO[S](O)(=O)=O)[C@@H](O[S](O)(=O)=O)[C@@H]2O[S](O)(=O)=O)[C@H]( O[S](O)(=O)=O)[C@@H](O[S](O)(=O)=O)[C@@H]1O[S](O)(=O)=O ; PRD_900013 SMILES CACTVS 3.341 ;O[S](=O)(=O)OC[CH]1O[CH](O[C]2(CO[S](O)(=O)=O)O[CH](CO[S](O)(=O)=O)[CH](O[S](O)(=O)=O)[CH]2O[S](O)(=O)=O)[CH](O[S](O)(= O)=O)[CH](O[S](O)(=O)=O)[CH]1O[S](O)(=O)=O ; PRD_900013 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 ;C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O[C@]2([C@H]([C@@H]([C@H](O2)COS(=O)(=O)O)OS(=O)(=O)O)OS(=O)(=O)O)COS(=O)(=O)O)OS( =O)(=O)O)OS(=O)(=O)O)OS(=O)(=O)O)OS(=O)(=O)O ; PRD_900013 SMILES "OpenEye OEToolkits" 1.5.0 ;C(C1C(C(C(C(O1)OC2(C(C(C(O2)COS(=O)(=O)O)OS(=O)(=O)O)OS(=O)(=O)O)COS(=O)(=O)O)OS(=O)(=O)O)OS(=O)(=O)O)OS(=O)(=O)O)OS(=O )(=O)O ; PRD_900013 InChI InChI 1.03 ;InChI=1S/C12H22O35S8/c13-48(14,15)37-1-4-6(43-51(22,23)24)8(45-53(28,29)30)9(46-54(31,32)33)11(40-4)42-12(3-39-50(19,20 )21)10(47-55(34,35)36)7(44-52(25,26)27)5(41-12)2-38-49(16,17)18/h4-11H,1-3H2,(H,13,14,15)(H,16,17,18)(H,19,20,21)(H,22,2 3,24)(H,25,26,27)(H,28,29,30)(H,31,32,33)(H,34,35,36)/t4-,5-,6-,7-,8+,9-,10+,11-,12+/m1/s1 ; PRD_900013 InChIKey InChI 1.03 WEPNHBQBLCNOBB-UGDNZRGBSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_900013 "SYSTEMATIC NAME" ACDLabs 10.04 "1,3,4,6-tetra-O-sulfo-beta-D-fructofuranosyl 2,3,4,6-tetra-O-sulfo-alpha-D-glucopyranoside" PRD_900013 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 ;[(2R,3R,4S,5R,6R)-2-[(2S,3S,4R,5R)-3,4-disulfooxy-2,5-bis(sulfooxymethyl)oxolan-2-yl]oxy-4,5-disulfooxy-6-(sulfooxymeth yl)oxan-3-yl] hydrogen sulfate ; #