data_PRDCC_900026 # _chem_comp.id PRD_900026 _chem_comp.name "HEPARIN DISACCHARIDE I-S" _chem_comp.type saccharide _chem_comp.formula "C12 H15 N O19 S3" _chem_comp.pdbx_release_status REF_ONLY _chem_comp.formula_weight 573.438 _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_pcm ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_900026 C10 C10 C 0 1 N N S 17.826 7.465 32.230 -3.218 1.508 0.210 C1 SGN 1 1 1 polymer 1 ? ? ? PRD_900026 C8 C8 C 0 1 N N R 17.902 6.234 33.153 -3.354 -0.014 0.299 C2 SGN 2 1 1 polymer 1 ? ? ? PRD_900026 C4 C4 C 0 1 N N R 17.578 6.681 34.581 -2.094 -0.592 0.950 C3 SGN 3 1 1 polymer 1 ? ? ? PRD_900026 C1 C1 C 0 1 N N S 18.604 7.744 35.047 -0.870 -0.091 0.175 C4 SGN 4 1 1 polymer 1 ? ? ? PRD_900026 C2 C2 C 0 1 N N R 18.562 8.923 34.009 -0.920 1.436 0.096 C5 SGN 5 1 1 polymer 1 ? ? ? PRD_900026 C6 C6 C 0 1 N N N 19.597 10.006 34.392 0.316 1.946 -0.647 C6 SGN 6 1 1 polymer 1 ? ? ? PRD_900026 N14 N14 N 0 1 N N N 16.931 5.233 32.726 -4.526 -0.354 1.110 N SGN 7 1 1 polymer 1 ? ? ? PRD_900026 O15 O15 O 0 1 N N N 16.495 8.016 32.257 -3.035 2.046 1.521 O1 SGN 8 1 1 polymer 1 ? ? ? PRD_900026 O9 O9 O 0 1 N N N 17.625 5.571 35.485 -2.139 -2.019 0.905 O3 SGN 9 1 1 polymer 1 ? ? ? PRD_900026 O3 O3 O 0 1 N N N 18.409 8.245 36.398 0.323 -0.496 0.851 O4 SGN 10 1 1 polymer 1 ? ? ? PRD_900026 O5 O5 O 0 1 N N N 18.783 8.478 32.639 -2.095 1.845 -0.602 O5 SGN 11 1 1 polymer 1 ? ? ? PRD_900026 O11 O11 O 0 1 N N N 20.894 9.715 33.851 0.335 3.375 -0.615 O6 SGN 12 1 1 polymer 1 ? ? ? PRD_900026 S20 S20 S 0 1 N N N 17.386 3.649 32.636 -5.976 -0.674 0.377 S1 SGN 13 1 1 polymer 1 ? ? ? PRD_900026 O28 O28 O 0 1 N N N 17.659 3.154 33.941 -5.784 -1.885 -0.405 O1S SGN 14 1 1 polymer 1 ? ? ? PRD_900026 O29 O29 O 0 1 N N N 16.333 2.889 32.058 -6.946 -0.854 1.446 O2S SGN 15 1 1 polymer 1 ? ? ? PRD_900026 O30 O30 O -1 1 N N N 18.744 3.525 31.692 -6.278 0.480 -0.456 O3S SGN 16 1 1 polymer 1 ? ? ? PRD_900026 S16 S16 S 0 1 N N N 21.952 10.298 34.806 1.583 3.815 -1.368 S2 SGN 17 1 1 polymer 1 ? ? ? PRD_900026 O21 O21 O 0 1 N N N 21.850 9.682 36.091 1.300 3.623 -2.781 O4S SGN 18 1 1 polymer 1 ? ? ? PRD_900026 O22 O22 O 0 1 N N N 23.241 10.041 34.284 1.794 5.214 -1.031 O5S SGN 19 1 1 polymer 1 ? ? ? PRD_900026 O23 O23 O -1 1 N N N 21.744 11.939 34.961 2.666 2.964 -0.900 O6S SGN 20 1 1 polymer 1 ? ? ? PRD_900026 S26 S26 S 0 1 N N N 14.095 8.167 38.026 3.839 -0.465 2.398 S UAP 21 2 1 polymer 1 ? ? ? PRD_900026 C7 C7 C 0 1 N N R 17.081 8.840 36.581 1.245 -0.916 -0.157 C1 UAP 22 2 1 polymer 1 ? ? ? PRD_900026 C12 C12 C 0 1 N N R 16.533 8.572 38.015 2.629 -1.131 0.472 C2 UAP 23 2 1 polymer 1 ? ? ? PRD_900026 O18 O18 O 0 1 N N N 15.233 9.199 38.134 3.012 0.026 1.218 O2 UAP 24 2 1 polymer 1 ? ? ? PRD_900026 C17 C17 C 0 1 N N S 17.499 9.228 39.057 3.623 -1.366 -0.674 C3 UAP 25 2 1 polymer 1 ? ? ? PRD_900026 O25 O25 O 0 1 N N N 18.641 8.383 39.252 4.815 -1.968 -0.164 O3 UAP 26 2 1 polymer 1 ? ? ? PRD_900026 C24 C24 C 0 1 N N N 17.970 10.611 38.609 2.976 -2.288 -1.675 C4 UAP 27 2 1 polymer 1 ? ? ? PRD_900026 C19 C19 C 0 1 N N N 17.781 11.065 37.347 1.688 -2.581 -1.636 C5 UAP 28 2 1 polymer 1 ? ? ? PRD_900026 O13 O13 O 0 1 N N N 17.156 10.296 36.402 0.796 -2.138 -0.733 O5 UAP 29 2 1 polymer 1 ? ? ? PRD_900026 C27 C27 C 0 1 N N N 18.232 12.409 36.961 1.180 -3.479 -2.684 C6 UAP 30 2 1 polymer 1 ? ? ? PRD_900026 O31 O31 O 0 1 N N N 12.869 8.830 38.306 5.141 -0.831 1.862 O1S UAP 31 2 1 polymer 1 ? ? ? PRD_900026 O32 O32 O 0 1 N N N 14.038 7.626 36.705 3.919 0.645 3.334 O2S UAP 32 2 1 polymer 1 ? ? ? PRD_900026 O33 O33 O -1 1 N N N 14.315 6.943 39.128 3.128 -1.607 2.952 O3S UAP 33 2 1 polymer 1 ? ? ? PRD_900026 O34 O34 O -1 1 N N N 17.702 12.970 36.025 -0.003 -3.789 -2.704 O61 UAP 34 2 1 polymer 1 ? ? ? PRD_900026 O35 O35 O 0 1 N N N 19.255 13.054 37.667 1.941 -3.917 -3.537 O62 UAP 35 2 1 polymer 1 ? ? ? PRD_900026 H10 H10 H 0 1 N N N 18.075 7.141 31.192 -4.123 1.928 -0.231 H1 SGN 36 1 1 polymer 1 ? ? ? PRD_900026 H8 H8 H 0 1 N N N 18.923 5.788 33.108 -3.471 -0.428 -0.702 H2 SGN 37 1 1 polymer 1 ? ? ? PRD_900026 H4 H4 H 0 1 N N N 16.550 7.113 34.582 -2.032 -0.260 1.986 H3 SGN 38 1 1 polymer 1 ? ? ? PRD_900026 H1 H1 H 0 1 N N N 19.602 7.249 35.086 -0.879 -0.510 -0.831 H4 SGN 39 1 1 polymer 1 ? ? ? PRD_900026 H2 H2 H 0 1 N N N 17.534 9.354 34.048 -0.934 1.851 1.104 H5 SGN 40 1 1 polymer 1 ? ? ? PRD_900026 H61 1H6 H 0 1 N N N 19.641 10.154 35.496 1.215 1.560 -0.165 H61 SGN 41 1 1 polymer 1 ? ? ? PRD_900026 H62 2H6 H 0 1 N N N 19.251 11.023 34.094 0.284 1.606 -1.682 H62 SGN 42 1 1 polymer 1 ? ? ? PRD_900026 H14 H14 H 0 1 N N N 16.549 5.514 31.823 -4.452 -0.393 2.076 HN SGN 43 1 1 polymer 1 ? ? ? PRD_900026 H15 H15 H 0 1 N N N 15.869 7.353 31.990 -2.956 3.005 1.422 HO1 SGN 44 1 1 polymer 1 ? ? ? PRD_900026 HO9 HO9 H 0 1 N N N 16.996 4.919 35.199 -2.923 -2.290 1.403 HO3 SGN 45 1 1 polymer 1 ? ? ? PRD_900026 H7 H7 H 0 1 N N N 16.403 8.377 35.826 1.313 -0.152 -0.931 H1 UAP 46 2 1 polymer 1 ? ? ? PRD_900026 H12 H12 H 0 1 N N N 16.457 7.475 38.200 2.605 -2.003 1.127 H2 UAP 47 2 1 polymer 1 ? ? ? PRD_900026 H17 H17 H 0 1 N N N 16.934 9.348 40.011 3.865 -0.417 -1.150 H3 UAP 48 2 1 polymer 1 ? ? ? PRD_900026 H25 H25 H 0 1 N N N 19.227 8.781 39.885 5.399 -2.114 -0.921 HO3 UAP 49 2 1 polymer 1 ? ? ? PRD_900026 H24 H24 H 0 1 N N N 18.490 11.343 39.250 3.586 -2.725 -2.452 H4 UAP 50 2 1 polymer 1 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_900026 C1 C2 SING N N 1 PRD_900026 C1 O3 SING N N 2 PRD_900026 C1 C4 SING N N 3 PRD_900026 C1 H1 SING N N 4 PRD_900026 C2 O5 SING N N 5 PRD_900026 C2 C6 SING N N 6 PRD_900026 C2 H2 SING N N 7 PRD_900026 O3 C7 SING N N 8 PRD_900026 C4 C8 SING N N 9 PRD_900026 C4 O9 SING N N 10 PRD_900026 C4 H4 SING N N 11 PRD_900026 O5 C10 SING N N 12 PRD_900026 C6 O11 SING N N 13 PRD_900026 C6 H61 SING N N 14 PRD_900026 C6 H62 SING N N 15 PRD_900026 C7 C12 SING N N 16 PRD_900026 C7 O13 SING N N 17 PRD_900026 C7 H7 SING N N 18 PRD_900026 C8 C10 SING N N 19 PRD_900026 C8 N14 SING N N 20 PRD_900026 C8 H8 SING N N 21 PRD_900026 O9 HO9 SING N N 22 PRD_900026 C10 O15 SING N N 23 PRD_900026 C10 H10 SING N N 24 PRD_900026 O11 S16 SING N N 25 PRD_900026 C12 C17 SING N N 26 PRD_900026 C12 O18 SING N N 27 PRD_900026 C12 H12 SING N N 28 PRD_900026 O13 C19 SING N N 29 PRD_900026 N14 S20 SING N N 30 PRD_900026 N14 H14 SING N N 31 PRD_900026 O15 H15 SING N N 32 PRD_900026 S16 O21 DOUB N N 33 PRD_900026 S16 O22 DOUB N N 34 PRD_900026 S16 O23 SING N N 35 PRD_900026 C17 C24 SING N N 36 PRD_900026 C17 O25 SING N N 37 PRD_900026 C17 H17 SING N N 38 PRD_900026 O18 S26 SING N N 39 PRD_900026 C19 C24 DOUB N N 40 PRD_900026 C19 C27 SING N N 41 PRD_900026 S20 O28 DOUB N N 42 PRD_900026 S20 O29 DOUB N N 43 PRD_900026 S20 O30 SING N N 44 PRD_900026 C24 H24 SING N N 45 PRD_900026 O25 H25 SING N N 46 PRD_900026 S26 O31 DOUB N N 47 PRD_900026 S26 O32 DOUB N N 48 PRD_900026 S26 O33 SING N N 49 PRD_900026 C27 O34 SING N N 50 PRD_900026 C27 O35 DOUB N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_900026 SMILES ACDLabs 12.01 "[O-]S(=O)(=O)OC2C(O)C=C(OC2OC1C(OC(O)C(NS([O-])(=O)=O)C1O)COS([O-])(=O)=O)C([O-])=O" PRD_900026 InChI InChI 1.03 ;InChI=1S/C12H19NO19S3/c14-3-1-4(10(16)17)30-12(8(3)32-35(25,26)27)31-9-5(2-28-34(22,23)24)29-11(18)6(7(9)15)13-33(19,20 )21/h1,3,5-9,11-15,18H,2H2,(H,16,17)(H,19,20,21)(H,22,23,24)(H,25,26,27)/p-4/t3-,5+,6+,7+,8+,9+,11-,12-/m0/s1 ; PRD_900026 InChIKey InChI 1.03 LRPGJWKAYQRIAQ-GYBHJADLSA-J PRD_900026 SMILES_CANONICAL CACTVS 3.370 ;O[C@H]1O[C@H](CO[S]([O-])(=O)=O)[C@@H](O[C@@H]2OC(=C[C@H](O)[C@H]2O[S]([O-])(=O)=O)C([O-])=O)[C@H](O)[C@H]1N[S]([O-])(= O)=O ; PRD_900026 SMILES CACTVS 3.370 "O[CH]1O[CH](CO[S]([O-])(=O)=O)[CH](O[CH]2OC(=C[CH](O)[CH]2O[S]([O-])(=O)=O)C([O-])=O)[CH](O)[CH]1N[S]([O-])(=O)=O" PRD_900026 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 ;C1=C(O[C@H]([C@@H]([C@H]1O)OS(=O)(=O)[O-])O[C@@H]2[C@H](O[C@@H]([C@@H]([C@H]2O)NS(=O)(=O)[O-])O)COS(=O)(=O)[O-])C(=O)[O -] ; PRD_900026 SMILES "OpenEye OEToolkits" 1.7.2 "C1=C(OC(C(C1O)OS(=O)(=O)[O-])OC2C(OC(C(C2O)NS(=O)(=O)[O-])O)COS(=O)(=O)[O-])C(=O)[O-]" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_900026 "SYSTEMATIC NAME" ACDLabs 12.01 ;2-deoxy-4-O-(4-deoxy-2-O-sulfonato-alpha-L-threo-hex-4-enopyranuronosyl)-6-O-sulfonato-2-(sulfonatoamino)-alpha-D-gluco pyranose ; PRD_900026 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 ;(2R,3R,4S)-2-[(2R,3S,4R,5R,6S)-4,6-bis(oxidanyl)-5-(sulfonatoamino)-2-(sulfonatooxymethyl)oxan-3-yl]oxy-4-oxidanyl-3-su lfonatooxy-3,4-dihydro-2H-pyran-6-carboxylate ; #