data_PRDCC_900027
#
_chem_comp.id PRD_900027
_chem_comp.name THIODIGALACTOSIDE
_chem_comp.type saccharide
_chem_comp.formula "C12 H22 O10 S"
_chem_comp.pdbx_release_status REF_ONLY
_chem_comp.formula_weight 358.362
_chem_comp.pdbx_type ?
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge ?
_chem_comp.pdbx_initial_date ?
_chem_comp.pdbx_modified_date ?
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ?
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag ?
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag ?
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_pcm ?
_chem_comp.pdbx_processing_site ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_residue_numbering
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_polymer_type
_chem_comp_atom.pdbx_ref_id
_chem_comp_atom.pdbx_component_id
_chem_comp_atom.pdbx_ordinal
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
PRD_900027 C1 C1 C 0 1 N N S 28.341 -18.400 51.875 -1.366 0.415 0.383 GAL 1 C1 polymer 1 1 1 ? ? ?
PRD_900027 C2 C2 C 0 1 N N R 28.323 -18.403 53.391 -2.579 1.223 0.853 GAL 1 C2 polymer 1 1 2 ? ? ?
PRD_900027 C3 C3 C 0 1 N N S 26.917 -18.485 53.941 -3.747 0.269 1.120 GAL 1 C3 polymer 1 1 3 ? ? ?
PRD_900027 C4 C4 C 0 1 N N R 26.062 -17.424 53.265 -4.039 -0.531 -0.153 GAL 1 C4 polymer 1 1 4 ? ? ?
PRD_900027 C5 C5 C 0 1 N N R 26.193 -17.455 51.734 -2.771 -1.271 -0.585 GAL 1 C5 polymer 1 1 5 ? ? ?
PRD_900027 C6 C6 C 0 1 N N N 25.354 -16.412 50.988 -3.038 -2.025 -1.889 GAL 1 C6 polymer 1 1 6 ? ? ?
PRD_900027 O2 O1 O 0 1 N N N 29.098 -19.510 53.871 -2.249 1.923 2.055 GAL 1 O2 polymer 1 1 7 ? ? ?
PRD_900027 O3 O2 O 0 1 N N N 27.045 -18.246 55.350 -4.904 1.021 1.489 GAL 1 O3 polymer 1 1 8 ? ? ?
PRD_900027 O4 O3 O 0 1 N N N 26.502 -16.179 53.809 -4.449 0.360 -1.193 GAL 1 O4 polymer 1 1 9 ? ? ?
PRD_900027 O5 O4 O 0 1 N N N 27.560 -17.335 51.344 -1.716 -0.329 -0.786 GAL 1 O5 polymer 1 1 10 ? ? ?
PRD_900027 O6 O5 O 0 1 N N N 25.833 -16.260 49.646 -1.893 -2.808 -2.230 GAL 1 O6 polymer 1 1 11 ? ? ?
PRD_900027 "C1'" C7 C 0 1 N N S 30.333 -19.189 50.019 1.367 0.414 -0.386 YIO 2 C1 polymer 1 1 12 ? ? ?
PRD_900027 "C2'" C8 C 0 1 N N R 31.641 -18.715 49.407 2.579 1.220 -0.857 YIO 2 C2 polymer 1 1 13 ? ? ?
PRD_900027 "C3'" C9 C 0 1 N N S 32.041 -19.659 48.288 3.747 0.265 -1.120 YIO 2 C3 polymer 1 1 14 ? ? ?
PRD_900027 "C4'" C10 C 0 1 N N R 32.120 -21.085 48.818 4.039 -0.531 0.156 YIO 2 C4 polymer 1 1 15 ? ? ?
PRD_900027 "C5'" C11 C 0 1 N N R 30.818 -21.508 49.494 2.770 -1.270 0.588 YIO 2 C5 polymer 1 1 16 ? ? ?
PRD_900027 "C6'" C12 C 0 1 N N N 30.957 -22.855 50.204 3.036 -2.019 1.895 YIO 2 C6 polymer 1 1 17 ? ? ?
PRD_900027 "O2'" O6 O 0 1 N N N 31.506 -17.376 48.910 2.251 1.917 -2.060 YIO 2 O2 polymer 1 1 18 ? ? ?
PRD_900027 "O3'" O7 O 0 1 N N N 33.311 -19.270 47.753 4.905 1.016 -1.490 YIO 2 O3 polymer 1 1 19 ? ? ?
PRD_900027 "O4'" O8 O 0 1 N N N 33.194 -21.180 49.762 4.448 0.363 1.193 YIO 2 O4 polymer 1 1 20 ? ? ?
PRD_900027 "O5'" O9 O 0 1 N N N 30.409 -20.543 50.464 1.715 -0.327 0.786 YIO 2 O5 polymer 1 1 21 ? ? ?
PRD_900027 "O6'" O10 O 0 1 N N N 30.987 -23.919 49.247 1.891 -2.802 2.238 YIO 2 O6 polymer 1 1 22 ? ? ?
PRD_900027 S1 S1 S 0 1 N N N 30.027 -18.189 51.430 0.000 1.543 -0.003 YIO 2 S1 polymer 1 1 23 ? ? ?
PRD_900027 H1 H1 H 0 1 N N N 28.016 -19.377 51.486 -1.059 -0.271 1.172 GAL 1 H1 polymer 1 1 24 ? ? ?
PRD_900027 H2 H2 H 0 1 N N N 28.776 -17.464 53.742 -2.861 1.939 0.081 GAL 1 H2 polymer 1 1 25 ? ? ?
PRD_900027 H3 H4 H 0 1 N N N 26.496 -19.482 53.746 -3.483 -0.414 1.928 GAL 1 H3 polymer 1 1 26 ? ? ?
PRD_900027 H4 H6 H 0 1 N N N 25.009 -17.598 53.529 -4.834 -1.251 0.043 GAL 1 H4 polymer 1 1 27 ? ? ?
PRD_900027 H5 H8 H 0 1 N N N 25.833 -18.442 51.407 -2.482 -1.980 0.192 GAL 1 H5 polymer 1 1 28 ? ? ?
PRD_900027 H61 H10 H 0 1 N N N 24.304 -16.740 50.964 -3.240 -1.310 -2.687 GAL 1 H61 polymer 1 1 29 ? ? ?
PRD_900027 H62 H9 H 0 1 N N N 25.425 -15.447 51.511 -3.901 -2.679 -1.760 GAL 1 H62 polymer 1 1 30 ? ? ?
PRD_900027 HO2 H3 H 0 1 N N N 29.089 -19.515 54.821 -1.513 2.542 1.961 GAL 1 HO2 polymer 1 1 31 ? ? ?
PRD_900027 HO3 H5 H 0 1 N N N 27.583 -18.925 55.739 -4.787 1.558 2.285 GAL 1 HO3 polymer 1 1 32 ? ? ?
PRD_900027 HO4 H7 H 0 1 N N N 26.407 -16.195 54.754 -5.246 0.867 -0.985 GAL 1 HO4 polymer 1 1 33 ? ? ?
PRD_900027 HO6 H11 H 0 1 N N N 25.307 -15.612 49.193 -1.992 -3.314 -3.048 GAL 1 HO6 polymer 1 1 34 ? ? ?
PRD_900027 "H1'" H12 H 0 1 N N N 29.501 -19.035 49.316 1.060 -0.275 -1.173 YIO 2 H1 polymer 1 1 35 ? ? ?
PRD_900027 "H2'" H13 H 0 1 N N N 32.420 -18.744 50.183 2.862 1.937 -0.086 YIO 2 H2 polymer 1 1 36 ? ? ?
PRD_900027 "H3'" H15 H 0 1 N N N 31.274 -19.618 47.500 3.483 -0.421 -1.925 YIO 2 H3 polymer 1 1 37 ? ? ?
PRD_900027 "HO2'" H14 H 0 0 N N N 31.256 -16.798 49.621 1.515 2.537 -1.967 YIO 2 HA polymer 1 1 38 ? ? ?
PRD_900027 "H4'" H17 H 0 1 N N N 32.309 -21.762 47.972 4.833 -1.253 -0.039 YIO 2 H4 polymer 1 1 39 ? ? ?
PRD_900027 "HO3'" H16 H 0 0 N N N 33.257 -18.381 47.424 4.792 1.545 -2.292 YIO 2 HB polymer 1 1 40 ? ? ?
PRD_900027 "H5'" H19 H 0 1 N N N 30.043 -21.605 48.720 2.482 -1.981 -0.186 YIO 2 H5 polymer 1 1 41 ? ? ?
PRD_900027 "HO4'" H18 H 0 0 N N N 33.246 -22.068 50.095 5.246 0.869 0.984 YIO 2 HC polymer 1 1 42 ? ? ?
PRD_900027 "H6'1" H21 H 0 0 N N N 31.890 -22.864 50.786 3.238 -1.302 2.691 YIO 2 H61C polymer 1 1 43 ? ? ?
PRD_900027 "H6'2" H20 H 0 0 N N N 30.101 -22.999 50.880 3.899 -2.674 1.770 YIO 2 H62C polymer 1 1 44 ? ? ?
PRD_900027 "HO6'" H22 H 0 0 N N N 31.073 -24.750 49.699 1.989 -3.305 3.058 YIO 2 HO6 polymer 1 1 45 ? ? ?
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PRD_900027 "O3'" "C3'" SING N N 1
PRD_900027 "C3'" "C4'" SING N N 2
PRD_900027 "C3'" "C2'" SING N N 3
PRD_900027 "C4'" "C5'" SING N N 4
PRD_900027 "C4'" "O4'" SING N N 5
PRD_900027 "O2'" "C2'" SING N N 6
PRD_900027 "O6'" "C6'" SING N N 7
PRD_900027 "C2'" "C1'" SING N N 8
PRD_900027 "C5'" "C6'" SING N N 9
PRD_900027 "C5'" "O5'" SING N N 10
PRD_900027 O6 C6 SING N N 11
PRD_900027 "C1'" "O5'" SING N N 12
PRD_900027 "C1'" S1 SING N N 13
PRD_900027 C6 C5 SING N N 14
PRD_900027 O5 C5 SING N N 15
PRD_900027 O5 C1 SING N N 16
PRD_900027 S1 C1 SING N N 17
PRD_900027 C5 C4 SING N N 18
PRD_900027 C1 C2 SING N N 19
PRD_900027 C4 O4 SING N N 20
PRD_900027 C4 C3 SING N N 21
PRD_900027 C2 O2 SING N N 22
PRD_900027 C2 C3 SING N N 23
PRD_900027 C3 O3 SING N N 24
PRD_900027 C1 H1 SING N N 25
PRD_900027 C2 H2 SING N N 26
PRD_900027 O2 HO2 SING N N 27
PRD_900027 C3 H3 SING N N 28
PRD_900027 O3 HO3 SING N N 29
PRD_900027 C4 H4 SING N N 30
PRD_900027 O4 HO4 SING N N 31
PRD_900027 C5 H5 SING N N 32
PRD_900027 C6 H62 SING N N 33
PRD_900027 C6 H61 SING N N 34
PRD_900027 O6 HO6 SING N N 35
PRD_900027 "C1'" "H1'" SING N N 36
PRD_900027 "C2'" "H2'" SING N N 37
PRD_900027 "O2'" "HO2'" SING N N 38
PRD_900027 "C3'" "H3'" SING N N 39
PRD_900027 "O3'" "HO3'" SING N N 40
PRD_900027 "C4'" "H4'" SING N N 41
PRD_900027 "O4'" "HO4'" SING N N 42
PRD_900027 "C5'" "H5'" SING N N 43
PRD_900027 "C6'" "H6'2" SING N N 44
PRD_900027 "C6'" "H6'1" SING N N 45
PRD_900027 "O6'" "HO6'" SING N N 46
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PRD_900027 SMILES ACDLabs 12.01 "C1(C(O)C(O)C(O)C(O1)CO)SC2OC(C(C(C2O)O)O)CO"
PRD_900027 InChI InChI 1.03
;InChI=1S/C12H22O10S/c13-1-3-5(15)7(17)9(19)11(21-3)23-12-10(20)8(18)6(16)4(2-14)22-12/h3-20H,1-2H2/t3-,4-,5+,6+,7+,8+,9
-,10-,11+,12+/m1/s1
;
PRD_900027 InChIKey InChI 1.03 SYKYBMOFPMXDRQ-ZFDCCPEWSA-N
PRD_900027 SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H](S[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@@H](O)[C@H]1O"
PRD_900027 SMILES CACTVS 3.385 "OC[CH]1O[CH](S[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH](O)[CH](O)[CH]1O"
PRD_900027 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@@H]([C@@H]([C@H]([C@@H](O1)S[C@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)O)O)O)O)O)O"
PRD_900027 SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)SC2C(C(C(C(O2)CO)O)O)O)O)O)O)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PRD_900027 "SYSTEMATIC NAME" ACDLabs 12.01 "beta-D-galactopyranosyl 1-thio-beta-D-galactopyranoside"
PRD_900027 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7
;(2~{R},3~{R},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxida
nyl)oxan-2-yl]sulfanyl-oxane-3,4,5-triol
;
#