data_PRDCC_900034
#
_chem_comp.id PRD_900034
_chem_comp.name THIOCELLOBIOSE
_chem_comp.type saccharide
_chem_comp.formula "C12 H22 O10 S"
_chem_comp.pdbx_release_status REF_ONLY
_chem_comp.formula_weight 358.362
_chem_comp.pdbx_type ?
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge ?
_chem_comp.pdbx_initial_date ?
_chem_comp.pdbx_modified_date ?
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ?
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag ?
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag ?
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_pcm ?
_chem_comp.pdbx_processing_site ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_residue_numbering
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_polymer_type
_chem_comp_atom.pdbx_ref_id
_chem_comp_atom.pdbx_component_id
_chem_comp_atom.pdbx_ordinal
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
PRD_900034 "C1'" C7 C 0 1 N N R -1.279 10.284 -23.263 -4.219 -0.882 -0.274 SGC 1 C1 polymer 1 1 1 ? ? ?
PRD_900034 "O1'" O6 O 0 1 N N N -0.197 9.821 -24.035 -5.357 -1.106 -1.110 SGC 1 O1 polymer 1 1 2 ? ? ?
PRD_900034 "C2'" C8 C 0 1 N N R -0.800 11.422 -22.370 -2.991 -1.554 -0.893 SGC 1 C2 polymer 1 1 3 ? ? ?
PRD_900034 "O2'" O7 O 0 1 N N N 0.401 11.056 -21.665 -3.201 -2.966 -0.960 SGC 1 O2 polymer 1 1 4 ? ? ?
PRD_900034 "C3'" C9 C 0 1 N N R -1.846 11.787 -21.341 -1.765 -1.260 -0.024 SGC 1 C3 polymer 1 1 5 ? ? ?
PRD_900034 "O3'" O8 O 0 1 N N N -1.651 13.077 -20.686 -0.600 -1.821 -0.633 SGC 1 O3 polymer 1 1 6 ? ? ?
PRD_900034 "C4'" C10 C 0 1 N N S -3.251 11.716 -21.938 -1.595 0.258 0.104 SGC 1 C4 polymer 1 1 7 ? ? ?
PRD_900034 "C5'" C11 C 0 1 N N R -3.453 11.044 -23.336 -2.878 0.859 0.685 SGC 1 C5 polymer 1 1 8 ? ? ?
PRD_900034 "O5'" O9 O 0 1 N N N -2.248 10.808 -24.138 -3.984 0.522 -0.155 SGC 1 O5 polymer 1 1 9 ? ? ?
PRD_900034 "C6'" C12 C 0 1 N N N -4.520 11.921 -24.065 -2.739 2.381 0.760 SGC 1 C6 polymer 1 1 10 ? ? ?
PRD_900034 "O6'" O10 O 0 1 N N N -5.552 11.111 -24.526 -3.887 2.932 1.408 SGC 1 O6 polymer 1 1 11 ? ? ?
PRD_900034 "S4'" S1 S 0 1 N N N -4.315 10.973 -20.704 -0.202 0.621 1.206 SGC 1 S4 polymer 1 1 12 ? ? ?
PRD_900034 C2 C2 C 0 1 N N R -6.816 11.756 -20.144 1.919 1.512 -0.275 BGC 2 C2 polymer 1 1 13 ? ? ?
PRD_900034 C3 C3 C 0 1 N N S -7.904 12.850 -20.046 3.171 1.164 -1.087 BGC 2 C3 polymer 1 1 14 ? ? ?
PRD_900034 C4 C4 C 0 1 N N S -7.374 13.800 -18.967 4.097 0.298 -0.228 BGC 2 C4 polymer 1 1 15 ? ? ?
PRD_900034 C5 C5 C 0 1 N N R -5.889 14.240 -19.298 3.337 -0.949 0.231 BGC 2 C5 polymer 1 1 16 ? ? ?
PRD_900034 C6 C6 C 0 1 N N N -5.377 15.168 -18.184 4.236 -1.791 1.139 BGC 2 C6 polymer 1 1 17 ? ? ?
PRD_900034 C1 C1 C 0 1 N N S -5.426 12.320 -20.457 1.242 0.219 0.185 BGC 2 C1 polymer 1 1 18 ? ? ?
PRD_900034 O2 O1 O 0 1 N N N -7.232 10.935 -21.204 1.014 2.260 -1.091 BGC 2 O2 polymer 1 1 19 ? ? ?
PRD_900034 O3 O2 O 0 1 N N N -9.217 12.277 -19.991 3.849 2.366 -1.459 BGC 2 O3 polymer 1 1 20 ? ? ?
PRD_900034 O4 O3 O 0 1 N N N -8.308 14.875 -18.706 5.235 -0.094 -0.999 BGC 2 O4 polymer 1 1 21 ? ? ?
PRD_900034 O5 O4 O 0 1 N N N -4.964 13.186 -19.394 2.168 -0.554 0.952 BGC 2 O5 polymer 1 1 22 ? ? ?
PRD_900034 O6 O5 O 0 1 N N N -4.014 15.507 -18.360 3.572 -3.013 1.467 BGC 2 O6 polymer 1 1 23 ? ? ?
PRD_900034 "H1'" H12 H 0 1 N N N -1.698 9.479 -22.641 -4.405 -1.305 0.714 SGC 1 H1 polymer 1 1 24 ? ? ?
PRD_900034 "HO1'" H19 H 0 0 N N N 0.471 9.462 -23.462 -6.173 -0.707 -0.778 SGC 1 H1O polymer 1 1 25 ? ? ?
PRD_900034 "H2'" H13 H 0 1 N N N -0.605 12.302 -23.000 -2.828 -1.161 -1.897 SGC 1 H2 polymer 1 1 26 ? ? ?
PRD_900034 "HO2'" H20 H 0 0 N N N 0.680 11.780 -21.116 -3.966 -3.225 -1.492 SGC 1 H2O polymer 1 1 27 ? ? ?
PRD_900034 "H3'" H14 H 0 1 N N N -1.801 11.015 -20.559 -1.906 -1.695 0.965 SGC 1 H3 polymer 1 1 28 ? ? ?
PRD_900034 "HO3'" H21 H 0 0 N N N -2.350 13.223 -20.059 -0.671 -2.767 -0.818 SGC 1 H3O polymer 1 1 29 ? ? ?
PRD_900034 "H4'" H15 H 0 1 N N N -3.615 12.750 -22.029 -1.405 0.687 -0.880 SGC 1 H4 polymer 1 1 30 ? ? ?
PRD_900034 "H5'" H16 H 0 1 N N N -3.925 10.068 -23.148 -3.046 0.460 1.685 SGC 1 H5 polymer 1 1 31 ? ? ?
PRD_900034 "H6'2" H17 H 0 0 N N N -4.924 12.665 -23.363 -1.844 2.637 1.326 SGC 1 H62 polymer 1 1 32 ? ? ?
PRD_900034 "H6'1" H18 H 0 0 N N N -4.051 12.437 -24.916 -2.661 2.789 -0.248 SGC 1 H61 polymer 1 1 33 ? ? ?
PRD_900034 "HO6'" H22 H 0 0 N N N -6.201 11.645 -24.969 -3.867 3.896 1.491 SGC 1 H6 polymer 1 1 34 ? ? ?
PRD_900034 H2 H2 H 0 1 N N N -6.779 11.197 -19.198 2.201 2.106 0.594 BGC 2 H2 polymer 1 1 35 ? ? ?
PRD_900034 H3 H3 H 0 1 N N N -7.843 13.411 -20.990 2.883 0.615 -1.983 BGC 2 H3 polymer 1 1 36 ? ? ?
PRD_900034 H4 H4 H 0 1 N N N -7.305 13.204 -18.045 4.425 0.866 0.642 BGC 2 H4 polymer 1 1 37 ? ? ?
PRD_900034 H5 H5 H 0 1 N N N -5.910 14.810 -20.239 3.045 -1.538 -0.639 BGC 2 H5 polymer 1 1 38 ? ? ?
PRD_900034 H61 H6 H 0 1 N N N -5.976 16.091 -18.188 5.170 -2.012 0.621 BGC 2 H6C1 polymer 1 1 39 ? ? ?
PRD_900034 H62 H7 H 0 1 N N N -5.494 14.659 -17.216 4.450 -1.236 2.052 BGC 2 H6C2 polymer 1 1 40 ? ? ?
PRD_900034 H1 H1 H 0 1 N N N -5.466 12.871 -21.408 0.924 -0.355 -0.685 BGC 2 H1 polymer 1 1 41 ? ? ?
PRD_900034 HO2 H8 H 0 1 N N N -8.094 10.583 -21.013 0.195 2.511 -0.642 BGC 2 HB polymer 1 1 42 ? ? ?
PRD_900034 HO3 H9 H 0 1 N N N -9.863 12.971 -19.931 3.317 2.966 -1.999 BGC 2 HC polymer 1 1 43 ? ? ?
PRD_900034 HO4 H10 H 0 1 N N N -7.954 15.447 -18.035 5.762 0.648 -1.327 BGC 2 HD polymer 1 1 44 ? ? ?
PRD_900034 HO6 H11 H 0 1 N N N -3.736 16.079 -17.654 4.086 -3.597 2.042 BGC 2 H6 polymer 1 1 45 ? ? ?
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PRD_900034 C1 "S4'" SING N N 1
PRD_900034 C1 C2 SING N N 2
PRD_900034 C1 O5 SING N N 3
PRD_900034 C2 O2 SING N N 4
PRD_900034 C2 C3 SING N N 5
PRD_900034 C3 O3 SING N N 6
PRD_900034 C3 C4 SING N N 7
PRD_900034 C4 O4 SING N N 8
PRD_900034 C4 C5 SING N N 9
PRD_900034 C5 O5 SING N N 10
PRD_900034 C5 C6 SING N N 11
PRD_900034 C6 O6 SING N N 12
PRD_900034 "C1'" "O5'" SING N N 13
PRD_900034 "C1'" "O1'" SING N N 14
PRD_900034 "C1'" "C2'" SING N N 15
PRD_900034 "C2'" "C3'" SING N N 16
PRD_900034 "C2'" "O2'" SING N N 17
PRD_900034 "C3'" "C4'" SING N N 18
PRD_900034 "C3'" "O3'" SING N N 19
PRD_900034 "C4'" "C5'" SING N N 20
PRD_900034 "C4'" "S4'" SING N N 21
PRD_900034 "C5'" "O5'" SING N N 22
PRD_900034 "C5'" "C6'" SING N N 23
PRD_900034 "C6'" "O6'" SING N N 24
PRD_900034 C1 H1 SING N N 25
PRD_900034 C2 H2 SING N N 26
PRD_900034 C3 H3 SING N N 27
PRD_900034 C4 H4 SING N N 28
PRD_900034 C5 H5 SING N N 29
PRD_900034 C6 H61 SING N N 30
PRD_900034 C6 H62 SING N N 31
PRD_900034 O2 HO2 SING N N 32
PRD_900034 O3 HO3 SING N N 33
PRD_900034 O4 HO4 SING N N 34
PRD_900034 O6 HO6 SING N N 35
PRD_900034 "C1'" "H1'" SING N N 36
PRD_900034 "C2'" "H2'" SING N N 37
PRD_900034 "C3'" "H3'" SING N N 38
PRD_900034 "C4'" "H4'" SING N N 39
PRD_900034 "C5'" "H5'" SING N N 40
PRD_900034 "C6'" "H6'2" SING N N 41
PRD_900034 "C6'" "H6'1" SING N N 42
PRD_900034 "O1'" "HO1'" SING N N 43
PRD_900034 "O2'" "HO2'" SING N N 44
PRD_900034 "O3'" "HO3'" SING N N 45
PRD_900034 "O6'" "HO6'" SING N N 46
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PRD_900034 InChI InChI 1.06 "InChI=1S/C12H22O10S/c13-1-3-5(15)6(16)9(19)12(22-3)23-10-4(2-14)21-11(20)8(18)7(10)17/h3-20H,1-2H2/t3-,4-,5-,6+,7-,8-,9-,10-,11-,12+/m1/s1"
PRD_900034 InChIKey InChI 1.06 VDQIIPZYLPYPNM-QRZGKKJRSA-N
PRD_900034 SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H](S[C@@H]2[C@@H](CO)O[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@@H](O)[C@@H]1O"
PRD_900034 SMILES CACTVS 3.385 "OC[CH]1O[CH](S[CH]2[CH](CO)O[CH](O)[CH](O)[CH]2O)[CH](O)[CH](O)[CH]1O"
PRD_900034 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)S[C@@H]2[C@H](O[C@H]([C@@H]([C@H]2O)O)O)CO)O)O)O)O"
PRD_900034 SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)SC2C(OC(C(C2O)O)O)CO)O)O)O)O"
#
_pdbx_chem_comp_identifier.comp_id PRD_900034
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
;(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{S},4~{R},5~{R},6~{R})-2-(hydroxymethyl)-4,5,6-tris(oxida
nyl)oxan-3-yl]sulfanyl-oxane-3,4,5-triol
;
#