data_PRDCC_900036 # _chem_comp.id PRD_900036 _chem_comp.name "6-DEOXY-ALPHA-L-IDOPYRANOSYL-(1->2)-ALPHA-D-GLUCOPYRANOSYL-(1->4)-2-(ACETYLAMINO)-2-DEOXY-BETA-L-GULOPYRANOSE" _chem_comp.type saccharide _chem_comp.formula "C20 H35 N O15" _chem_comp.pdbx_release_status REF_ONLY _chem_comp.formula_weight 529.490 _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_pcm ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_900036 CBI C5 C 0 1 N N R 17.799 69.252 47.381 -3.754 1.576 -0.979 NAG 1 C1 polymer 1 1 1 ? ? ? PRD_900036 CBS C2 C 0 1 N N R 19.131 68.567 47.064 -3.846 0.534 0.139 NAG 1 C2 polymer 1 1 2 ? ? ? PRD_900036 CBV C1 C 0 1 N N R 18.910 67.212 46.384 -2.453 0.315 0.738 NAG 1 C3 polymer 1 1 3 ? ? ? PRD_900036 CBU C8 C 0 1 N N S 17.776 66.373 46.958 -1.492 -0.111 -0.376 NAG 1 C4 polymer 1 1 4 ? ? ? PRD_900036 CBK C6 C 0 1 N N R 16.557 67.234 47.259 -1.491 0.955 -1.474 NAG 1 C5 polymer 1 1 5 ? ? ? PRD_900036 CAV C7 C 0 1 N N N 15.491 66.400 47.973 -0.579 0.508 -2.619 NAG 1 C6 polymer 1 1 6 ? ? ? PRD_900036 CBF C3 C 0 1 N N N 21.219 69.548 46.193 -6.083 0.807 1.065 NAG 1 C7 polymer 1 1 7 ? ? ? PRD_900036 CAB C4 C 0 1 N N N 21.821 70.391 45.067 -7.020 1.301 2.137 NAG 1 C8 polymer 1 1 8 ? ? ? PRD_900036 NAX N1 N 0 1 N N N 19.894 69.435 46.155 -4.757 1.014 1.182 NAG 1 N2 polymer 1 1 9 ? ? ? PRD_900036 OAH O3 O 0 1 N N N 18.107 70.351 48.242 -5.040 1.744 -1.580 NAG 1 O1 polymer 1 1 10 ? ? ? PRD_900036 OAZ O1 O 0 1 N N N 20.141 66.492 46.194 -2.516 -0.709 1.733 NAG 1 O3 polymer 1 1 11 ? ? ? PRD_900036 "O1'" O6 O 0 1 N N N 17.406 65.316 46.059 -0.174 -0.249 0.158 NAG 1 O4 polymer 1 1 12 ? ? ? PRD_900036 OBA O4 O 0 1 N N N 16.927 68.351 48.083 -2.821 1.132 -1.966 NAG 1 O5 polymer 1 1 13 ? ? ? PRD_900036 OAG O5 O 0 1 N N N 16.012 65.911 49.211 -0.492 1.550 -3.593 NAG 1 O6 polymer 1 1 14 ? ? ? PRD_900036 OAD O2 O 0 1 N N N 21.944 68.945 46.984 -6.523 0.223 0.097 NAG 1 O7 polymer 1 1 15 ? ? ? PRD_900036 "C1'" C9 C 0 1 N N S 17.883 64.050 46.540 0.555 -1.357 -0.372 GAL 2 C1 polymer 1 1 16 ? ? ? PRD_900036 "C2'" C14 C 0 1 N N R 16.975 62.961 45.989 1.993 -1.321 0.153 GAL 2 C2 polymer 1 1 17 ? ? ? PRD_900036 "C3'" C13 C 0 1 N N S 17.485 61.625 46.539 2.751 -2.545 -0.371 GAL 2 C3 polymer 1 1 18 ? ? ? PRD_900036 "C4'" C12 C 0 1 N N R 18.951 61.416 46.153 2.007 -3.814 0.057 GAL 2 C4 polymer 1 1 19 ? ? ? PRD_900036 "C5'" C10 C 0 1 N N R 19.780 62.614 46.624 0.569 -3.754 -0.465 GAL 2 C5 polymer 1 1 20 ? ? ? PRD_900036 "C6'" C11 C 0 1 N N N 21.232 62.457 46.166 -0.198 -4.990 0.010 GAL 2 C6 polymer 1 1 21 ? ? ? PRD_900036 "O2'" O11 O 0 1 N N N 15.633 63.212 46.432 2.638 -0.130 -0.301 GAL 2 O2 polymer 1 1 22 ? ? ? PRD_900036 "O3'" O10 O 0 1 N N N 16.695 60.554 46.015 4.072 -2.559 0.174 GAL 2 O3 polymer 1 1 23 ? ? ? PRD_900036 "O4'" O9 O 0 1 N N N 19.054 61.286 44.732 1.994 -3.902 1.484 GAL 2 O4 polymer 1 1 24 ? ? ? PRD_900036 "O5'" O7 O 0 1 N N N 19.228 63.825 46.081 -0.069 -2.577 0.035 GAL 2 O5 polymer 1 1 25 ? ? ? PRD_900036 "O6'" O8 O 0 1 N N N 21.999 63.579 46.609 -1.504 -4.992 -0.571 GAL 2 O6 polymer 1 1 26 ? ? ? PRD_900036 CBQ C15 C 0 1 N N S 14.668 62.736 45.481 3.582 0.410 0.625 FUC 3 C1 polymer 1 1 27 ? ? ? PRD_900036 CBO C20 C 0 1 N N S 13.263 62.950 46.049 4.418 1.490 -0.067 FUC 3 C2 polymer 1 1 28 ? ? ? PRD_900036 CBN C19 C 0 1 N N R 12.969 64.444 46.204 3.497 2.631 -0.510 FUC 3 C3 polymer 1 1 29 ? ? ? PRD_900036 CBL C18 C 0 1 N N S 13.217 65.174 44.882 2.747 3.170 0.712 FUC 3 C4 polymer 1 1 30 ? ? ? PRD_900036 CBH C16 C 0 1 N N S 14.629 64.864 44.377 1.976 2.025 1.374 FUC 3 C5 polymer 1 1 31 ? ? ? PRD_900036 CAC C17 C 0 1 N N N 14.875 65.552 43.033 1.272 2.544 2.630 FUC 3 C6 polymer 1 1 32 ? ? ? PRD_900036 OAL O15 O 0 1 N N N 13.137 62.289 47.311 5.068 0.930 -1.210 FUC 3 O2 polymer 1 1 33 ? ? ? PRD_900036 OAK O14 O 0 1 N N N 11.607 64.625 46.601 4.277 3.677 -1.092 FUC 3 O3 polymer 1 1 34 ? ? ? PRD_900036 OAI O13 O 0 1 N N N 12.248 64.759 43.915 3.682 3.718 1.643 FUC 3 O4 polymer 1 1 35 ? ? ? PRD_900036 OBB O12 O 0 1 N N N 14.800 63.443 44.234 2.887 0.985 1.734 FUC 3 O5 polymer 1 1 36 ? ? ? PRD_900036 HBI H8 H 0 1 N N N 17.333 69.601 46.448 -3.419 2.526 -0.564 NAG 1 H1 polymer 1 1 37 ? ? ? PRD_900036 HBS H3 H 0 1 N N N 19.691 68.415 47.998 -4.219 -0.405 -0.268 NAG 1 H2 polymer 1 1 38 ? ? ? PRD_900036 HBV H2 H 0 1 N N N 18.570 67.471 45.371 -2.099 1.242 1.190 NAG 1 H3 polymer 1 1 39 ? ? ? PRD_900036 HBU H14 H 0 1 N N N 18.124 65.935 47.905 -1.818 -1.064 -0.793 NAG 1 H4 polymer 1 1 40 ? ? ? PRD_900036 HBK H10 H 0 1 N N N 16.139 67.595 46.308 -1.127 1.897 -1.066 NAG 1 H5 polymer 1 1 41 ? ? ? PRD_900036 HAV1 H11 H 0 1 N N N 14.608 67.026 48.170 0.415 0.292 -2.228 NAG 1 H61 polymer 1 1 42 ? ? ? PRD_900036 HAV2 H12 H 0 1 N N N 15.204 65.550 47.336 -0.990 -0.389 -3.082 NAG 1 H62 polymer 1 1 43 ? ? ? PRD_900036 HAB1 H5 H 0 1 N N N 22.919 70.342 45.118 -7.342 2.314 1.899 NAG 1 H81 polymer 1 1 44 ? ? ? PRD_900036 HAB2 H6 H 0 1 N N N 21.482 70.001 44.096 -7.890 0.646 2.189 NAG 1 H82 polymer 1 1 45 ? ? ? PRD_900036 HAB3 H7 H 0 1 N N N 21.495 71.436 45.177 -6.506 1.298 3.098 NAG 1 H83 polymer 1 1 46 ? ? ? PRD_900036 HAX H4 H 0 1 N N N 19.392 69.967 45.474 -4.405 1.481 1.956 NAG 1 HN2 polymer 1 1 47 ? ? ? PRD_900036 HAH H9 H 0 1 N N N 17.307 70.811 48.468 -5.056 2.391 -2.298 NAG 1 HO1 polymer 1 1 48 ? ? ? PRD_900036 HAZ H1 H 0 1 N N N 20.798 67.077 45.835 -3.108 -0.505 2.470 NAG 1 HO3 polymer 1 1 49 ? ? ? PRD_900036 HAG H13 H 0 1 N N N 15.348 65.394 49.652 0.072 1.335 -4.349 NAG 1 HO6 polymer 1 1 50 ? ? ? PRD_900036 "H1'" H15 H 0 1 N N N 17.848 64.024 47.639 0.565 -1.300 -1.461 GAL 2 H1 polymer 1 1 51 ? ? ? PRD_900036 "H2'" H24 H 0 1 N N N 17.031 62.952 44.890 1.983 -1.338 1.243 GAL 2 H2 polymer 1 1 52 ? ? ? PRD_900036 "H3'" H22 H 0 1 N N N 17.410 61.646 47.636 2.805 -2.504 -1.459 GAL 2 H3 polymer 1 1 53 ? ? ? PRD_900036 "H4'" H20 H 0 1 N N N 19.324 60.507 46.648 2.508 -4.689 -0.357 GAL 2 H4 polymer 1 1 54 ? ? ? PRD_900036 "H5'" H16 H 0 1 N N N 19.758 62.649 47.723 0.578 -3.728 -1.554 GAL 2 H5 polymer 1 1 55 ? ? ? PRD_900036 "H6'1" H17 H 0 1 N N N 21.653 61.535 46.593 0.337 -5.889 -0.296 GAL 2 H61 polymer 1 1 56 ? ? ? PRD_900036 "H6'2" H18 H 0 1 N N N 21.265 62.401 45.068 -0.284 -4.970 1.096 GAL 2 H62 polymer 1 1 57 ? ? ? PRD_900036 H2 H23 H 0 1 N N N 15.785 60.684 46.255 4.607 -3.312 -0.111 GAL 2 HO3 polymer 1 1 58 ? ? ? PRD_900036 H1 H21 H 0 1 N N N 18.539 60.542 44.443 1.534 -4.681 1.825 GAL 2 HO4 polymer 1 1 59 ? ? ? PRD_900036 "H6'" H19 H 0 1 N N N 22.900 63.480 46.324 -2.048 -5.749 -0.313 GAL 2 HO6 polymer 1 1 60 ? ? ? PRD_900036 HBQ H25 H 0 1 N N N 14.814 61.659 45.312 4.238 -0.385 0.981 FUC 3 H1 polymer 1 1 61 ? ? ? PRD_900036 HBO H34 H 0 1 N N N 12.537 62.528 45.338 5.165 1.873 0.627 FUC 3 H2 polymer 1 1 62 ? ? ? PRD_900036 HBN H32 H 0 1 N N N 13.643 64.859 46.968 2.780 2.259 -1.243 FUC 3 H3 polymer 1 1 63 ? ? ? PRD_900036 HBL H30 H 0 1 N N N 13.135 66.257 45.057 2.048 3.946 0.398 FUC 3 H4 polymer 1 1 64 ? ? ? PRD_900036 HBH H26 H 0 1 N N N 15.354 65.254 45.107 1.235 1.635 0.677 FUC 3 H5 polymer 1 1 65 ? ? ? PRD_900036 HAC1 H27 H 0 1 N N N 14.743 66.638 43.147 2.017 2.875 3.354 FUC 3 H61 polymer 1 1 66 ? ? ? PRD_900036 HAC2 H28 H 0 1 N N N 15.900 65.341 42.695 0.626 3.380 2.365 FUC 3 H62 polymer 1 1 67 ? ? ? PRD_900036 HAC3 H29 H 0 1 N N N 14.158 65.172 42.290 0.673 1.745 3.066 FUC 3 H63 polymer 1 1 68 ? ? ? PRD_900036 HAL H35 H 0 1 N N N 12.263 62.427 47.655 5.665 0.198 -1.004 FUC 3 HO2 polymer 1 1 69 ? ? ? PRD_900036 HAK H33 H 0 1 N N N 11.453 64.172 47.422 4.780 3.405 -1.872 FUC 3 HO3 polymer 1 1 70 ? ? ? PRD_900036 HAI H31 H 0 1 N N N 11.376 64.955 44.236 3.276 4.074 2.445 FUC 3 HO4 polymer 1 1 71 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_900036 OAZ CBV SING N N 1 PRD_900036 CBV CBU SING N N 2 PRD_900036 CBV CBS SING N N 3 PRD_900036 CBS CBI SING N N 4 PRD_900036 CBS NAX SING N N 5 PRD_900036 NAX CBF SING N N 6 PRD_900036 CBF CAB SING N N 7 PRD_900036 CBF OAD DOUB N N 8 PRD_900036 CBI OAH SING N N 9 PRD_900036 CBI OBA SING N N 10 PRD_900036 OBA CBK SING N N 11 PRD_900036 CBK CBU SING N N 12 PRD_900036 CBK CAV SING N N 13 PRD_900036 CAV OAG SING N N 14 PRD_900036 CBU "O1'" SING N N 15 PRD_900036 "O1'" "C1'" SING N N 16 PRD_900036 "C1'" "C2'" SING N N 17 PRD_900036 "C1'" "O5'" SING N N 18 PRD_900036 "O5'" "C5'" SING N N 19 PRD_900036 "C5'" "C4'" SING N N 20 PRD_900036 "C5'" "C6'" SING N N 21 PRD_900036 "C6'" "O6'" SING N N 22 PRD_900036 "C4'" "O4'" SING N N 23 PRD_900036 "C4'" "C3'" SING N N 24 PRD_900036 "C3'" "O3'" SING N N 25 PRD_900036 "C3'" "C2'" SING N N 26 PRD_900036 "C2'" "O2'" SING N N 27 PRD_900036 "O2'" CBQ SING N N 28 PRD_900036 CBQ OBB SING N N 29 PRD_900036 CBQ CBO SING N N 30 PRD_900036 OBB CBH SING N N 31 PRD_900036 CBH CAC SING N N 32 PRD_900036 CBH CBL SING N N 33 PRD_900036 CBL OAI SING N N 34 PRD_900036 CBL CBN SING N N 35 PRD_900036 CBN OAK SING N N 36 PRD_900036 CBN CBO SING N N 37 PRD_900036 CBO OAL SING N N 38 PRD_900036 OAZ HAZ SING N N 39 PRD_900036 CBV HBV SING N N 40 PRD_900036 CBS HBS SING N N 41 PRD_900036 NAX HAX SING N N 42 PRD_900036 CAB HAB1 SING N N 43 PRD_900036 CAB HAB2 SING N N 44 PRD_900036 CAB HAB3 SING N N 45 PRD_900036 CBI HBI SING N N 46 PRD_900036 OAH HAH SING N N 47 PRD_900036 CBK HBK SING N N 48 PRD_900036 CAV HAV1 SING N N 49 PRD_900036 CAV HAV2 SING N N 50 PRD_900036 OAG HAG SING N N 51 PRD_900036 CBU HBU SING N N 52 PRD_900036 "C1'" "H1'" SING N N 53 PRD_900036 "C5'" "H5'" SING N N 54 PRD_900036 "C6'" "H6'1" SING N N 55 PRD_900036 "C6'" "H6'2" SING N N 56 PRD_900036 "O6'" "H6'" SING N N 57 PRD_900036 "C4'" "H4'" SING N N 58 PRD_900036 "O4'" H1 SING N N 59 PRD_900036 "C3'" "H3'" SING N N 60 PRD_900036 "O3'" H2 SING N N 61 PRD_900036 "C2'" "H2'" SING N N 62 PRD_900036 CBQ HBQ SING N N 63 PRD_900036 CBH HBH SING N N 64 PRD_900036 CAC HAC1 SING N N 65 PRD_900036 CAC HAC2 SING N N 66 PRD_900036 CAC HAC3 SING N N 67 PRD_900036 CBL HBL SING N N 68 PRD_900036 OAI HAI SING N N 69 PRD_900036 CBN HBN SING N N 70 PRD_900036 OAK HAK SING N N 71 PRD_900036 CBO HBO SING N N 72 PRD_900036 OAL HAL SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_900036 SMILES ACDLabs 10.04 "O=C(NC3C(O)C(OC2OC(C(O)C(O)C2OC1OC(C)C(O)C(O)C1O)CO)C(OC3O)CO)C" PRD_900036 SMILES_CANONICAL CACTVS 3.341 ;C[C@@H]1O[C@@H](O[C@@H]2[C@@H](O)[C@@H](O)[C@@H](CO)O[C@H]2O[C@H]3[C@H](O)[C@@H](NC(C)=O)[C@H](O)O[C@@H]3CO)[C@@H](O)[C @H](O)[C@@H]1O ; PRD_900036 SMILES CACTVS 3.341 "C[CH]1O[CH](O[CH]2[CH](O)[CH](O)[CH](CO)O[CH]2O[CH]3[CH](O)[CH](NC(C)=O)[CH](O)O[CH]3CO)[CH](O)[CH](O)[CH]1O" PRD_900036 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 ;C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O[C@@H]2[C@H]([C@H]([C@H](O[C@H]2O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)O)CO)C O)O)O)O)O)O ; PRD_900036 SMILES "OpenEye OEToolkits" 1.5.0 "CC1C(C(C(C(O1)OC2C(C(C(OC2OC3C(OC(C(C3O)NC(=O)C)O)CO)CO)O)O)O)O)O" PRD_900036 InChI InChI 1.03 ;InChI=1S/C20H35NO15/c1-5-10(25)13(28)15(30)19(32-5)36-17-14(29)11(26)7(3-22)34-20(17)35-16-8(4-23)33-18(31)9(12(16)27)2 1-6(2)24/h5,7-20,22-23,25-31H,3-4H2,1-2H3,(H,21,24)/t5-,7+,8+,9+,10+,11-,12+,13+,14-,15-,16+,17+,18+,19-,20-/m0/s1 ; PRD_900036 InChIKey InChI 1.03 PHTAQVMXYWFMHF-QVPNGJTFSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_900036 "SYSTEMATIC NAME" ACDLabs 10.04 "6-deoxy-alpha-L-galactopyranosyl-(1->2)-beta-D-galactopyranosyl-(1->4)-2-(acetylamino)-2-deoxy-beta-D-glucopyranose" PRD_900036 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 ;N-[(2R,3R,4R,5S,6R)-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3S,4R,5S,6S)-3,4,5-trihydroxy-6-methyl-o xan-2-yl]oxy-oxan-2-yl]oxy-2,4-dihydroxy-6-(hydroxymethyl)oxan-3-yl]ethanamide ; #