data_PRDCC_900070
#
_chem_comp.id PRD_900070
_chem_comp.name "6-deoxy-alpha-L-galactopyranosyl-(1->2)-beta-D-galactopyranosyl-(1->4)-beta-D-glucopyranose"
_chem_comp.type saccharide
_chem_comp.formula "C18 H32 O15"
_chem_comp.pdbx_release_status REF_ONLY
_chem_comp.formula_weight 488.438
_chem_comp.pdbx_type ?
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge ?
_chem_comp.pdbx_initial_date ?
_chem_comp.pdbx_modified_date ?
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ?
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag ?
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag ?
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_pcm ?
_chem_comp.pdbx_processing_site ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_residue_numbering
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_polymer_type
_chem_comp_atom.pdbx_ref_id
_chem_comp_atom.pdbx_component_id
_chem_comp_atom.pdbx_ordinal
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
PRD_900070 CC2 C14 C 0 1 N N R 3.865 4.071 22.138 4.258 -1.268 0.535 BGC 1 C2 polymer 1 1 1 ? ? ?
PRD_900070 CC3 C15 C 0 1 N N R 4.884 5.092 22.291 2.943 -0.627 0.989 BGC 1 C3 polymer 1 1 2 ? ? ?
PRD_900070 CC4 C16 C 0 1 N N S 4.960 5.582 23.703 1.987 -0.548 -0.205 BGC 1 C4 polymer 1 1 3 ? ? ?
PRD_900070 CC5 C17 C 0 1 N N R 5.053 4.435 24.701 1.782 -1.953 -0.778 BGC 1 C5 polymer 1 1 4 ? ? ?
PRD_900070 CC6 C18 C 0 1 N N N 4.723 4.859 26.011 0.875 -1.874 -2.008 BGC 1 C6 polymer 1 1 5 ? ? ?
PRD_900070 CC1 C13 C 0 1 N N R 4.218 2.922 22.925 3.965 -2.645 -0.067 BGC 1 C1 polymer 1 1 6 ? ? ?
PRD_900070 OC1 O11 O 0 1 N N N 3.328 1.849 22.651 5.180 -3.226 -0.544 BGC 1 O1 polymer 1 1 7 ? ? ?
PRD_900070 OC2 O12 O 0 1 N N N 3.707 3.652 20.715 5.131 -1.413 1.657 BGC 1 O2 polymer 1 1 8 ? ? ?
PRD_900070 OC3 O13 O 0 1 N N N 4.603 6.233 21.384 3.199 0.688 1.485 BGC 1 O3 polymer 1 1 9 ? ? ?
PRD_900070 OB1 O6 O 0 1 N N N 6.221 6.278 23.772 0.731 -0.018 0.223 BGC 1 O4 polymer 1 1 10 ? ? ?
PRD_900070 OC5 O14 O 0 1 N N N 4.091 3.311 24.339 3.046 -2.503 -1.152 BGC 1 O5 polymer 1 1 11 ? ? ?
PRD_900070 OC6 O15 O 0 1 N N N 5.642 4.248 26.898 0.570 -3.195 -2.460 BGC 1 O6 polymer 1 1 12 ? ? ?
PRD_900070 CB1 C7 C 0 1 N N S 6.154 7.493 24.468 0.355 1.192 -0.438 GAL 2 C1 polymer 1 1 13 ? ? ?
PRD_900070 CB2 C8 C 0 1 N N R 7.549 7.906 24.716 -1.072 1.571 -0.035 GAL 2 C2 polymer 1 1 14 ? ? ?
PRD_900070 CB3 C9 C 0 1 N N S 7.626 9.224 25.312 -1.446 2.900 -0.700 GAL 2 C3 polymer 1 1 15 ? ? ?
PRD_900070 CB4 C10 C 0 1 N N R 6.920 10.248 24.512 -0.424 3.966 -0.293 GAL 2 C4 polymer 1 1 16 ? ? ?
PRD_900070 CB5 C11 C 0 1 N N R 5.468 9.875 24.188 0.978 3.495 -0.686 GAL 2 C5 polymer 1 1 17 ? ? ?
PRD_900070 CB6 C12 C 0 1 N N N 4.917 10.748 23.245 2.010 4.528 -0.229 GAL 2 C6 polymer 1 1 18 ? ? ?
PRD_900070 OA1 O1 O 0 1 N N N 8.140 6.970 25.701 -1.976 0.552 -0.465 GAL 2 O2 polymer 1 1 19 ? ? ?
PRD_900070 OB3 O7 O 0 1 N N N 9.033 9.605 25.516 -2.749 3.299 -0.271 GAL 2 O3 polymer 1 1 20 ? ? ?
PRD_900070 OB4 O8 O 0 1 N N N 7.660 10.607 23.340 -0.482 4.169 1.120 GAL 2 O4 polymer 1 1 21 ? ? ?
PRD_900070 OB5 O9 O 0 1 N N N 5.450 8.457 23.613 1.250 2.240 -0.058 GAL 2 O5 polymer 1 1 22 ? ? ?
PRD_900070 OB6 O10 O 0 1 N N N 3.668 10.203 22.951 3.306 4.145 -0.697 GAL 2 O6 polymer 1 1 23 ? ? ?
PRD_900070 CA1 C1 C 0 1 N N S 9.458 6.664 25.396 -3.123 0.400 0.375 FUC 3 C1 polymer 1 1 24 ? ? ?
PRD_900070 CA2 C2 C 0 1 N N S 10.181 6.493 26.702 -4.154 -0.489 -0.326 FUC 3 C2 polymer 1 1 25 ? ? ?
PRD_900070 CA3 C3 C 0 1 N N R 9.579 5.391 27.521 -3.552 -1.880 -0.546 FUC 3 C3 polymer 1 1 26 ? ? ?
PRD_900070 CA4 C4 C 0 1 N N S 9.449 4.114 26.765 -3.112 -2.453 0.805 FUC 3 C4 polymer 1 1 27 ? ? ?
PRD_900070 CA5 C5 C 0 1 N N S 8.826 4.258 25.387 -2.121 -1.489 1.461 FUC 3 C5 polymer 1 1 28 ? ? ?
PRD_900070 CA6 C6 C 0 1 N N N 9.008 3.030 24.579 -1.722 -2.025 2.838 FUC 3 C6 polymer 1 1 29 ? ? ?
PRD_900070 OA2 O2 O 0 1 N N N 10.124 7.726 27.454 -4.502 0.086 -1.587 FUC 3 O2 polymer 1 1 30 ? ? ?
PRD_900070 OA3 O3 O 0 1 N N N 10.378 5.173 28.726 -4.533 -2.738 -1.132 FUC 3 O3 polymer 1 1 31 ? ? ?
PRD_900070 OA4 O4 O 0 1 N N N 10.778 3.552 26.649 -4.253 -2.614 1.650 FUC 3 O4 polymer 1 1 32 ? ? ?
PRD_900070 OA5 O5 O 0 1 N N N 9.345 5.403 24.609 -2.733 -0.206 1.609 FUC 3 O5 polymer 1 1 33 ? ? ?
PRD_900070 H24 H24 H 0 1 N N N 2.903 4.470 22.492 4.732 -0.636 -0.216 BGC 1 H2 polymer 1 1 34 ? ? ?
PRD_900070 H26 H26 H 0 1 N N N 5.861 4.664 22.021 2.496 -1.233 1.777 BGC 1 H3 polymer 1 1 35 ? ? ?
PRD_900070 H28 H28 H 0 1 N N N 4.112 6.240 23.942 2.414 0.100 -0.971 BGC 1 H4 polymer 1 1 36 ? ? ?
PRD_900070 H29 H29 H 0 1 N N N 6.078 4.037 24.682 1.317 -2.588 -0.024 BGC 1 H5 polymer 1 1 37 ? ? ?
PRD_900070 H30 H30 H 0 1 N N N 4.802 5.954 26.083 -0.048 -1.357 -1.747 BGC 1 H6C1 polymer 1 1 38 ? ? ?
PRD_900070 H31 H31 H 0 1 N N N 3.697 4.548 26.260 1.386 -1.328 -2.801 BGC 1 H6C2 polymer 1 1 39 ? ? ?
PRD_900070 H22 H22 H 0 1 N N N 5.256 2.623 22.715 3.529 -3.290 0.697 BGC 1 H1 polymer 1 1 40 ? ? ?
PRD_900070 H23 H23 H 0 1 N N N 3.570 1.095 23.176 5.069 -4.101 -0.939 BGC 1 HA polymer 1 1 41 ? ? ?
PRD_900070 H25 H25 H 0 1 N N N 3.473 4.406 20.186 5.983 -1.818 1.443 BGC 1 HB polymer 1 1 42 ? ? ?
PRD_900070 H27 H27 H 0 1 N N N 5.275 6.896 21.491 3.804 0.714 2.239 BGC 1 HC polymer 1 1 43 ? ? ?
PRD_900070 H32 H32 H 0 1 N N N 5.447 4.513 27.789 -0.002 -3.222 -3.239 BGC 1 H6 polymer 1 1 44 ? ? ?
PRD_900070 H12 H12 H 0 1 N N N 5.621 7.374 25.423 0.402 1.046 -1.517 GAL 2 H1 polymer 1 1 45 ? ? ?
PRD_900070 H13 H13 H 0 1 N N N 8.123 7.875 23.778 -1.129 1.676 1.048 GAL 2 H2 polymer 1 1 46 ? ? ?
PRD_900070 H14 H14 H 0 1 N N N 7.143 9.180 26.300 -1.437 2.781 -1.783 GAL 2 H3 polymer 1 1 47 ? ? ?
PRD_900070 H16 H16 H 0 1 N N N 6.863 11.148 25.142 -0.651 4.902 -0.804 GAL 2 H4 polymer 1 1 48 ? ? ?
PRD_900070 H18 H18 H 0 1 N N N 4.882 9.888 25.119 1.033 3.380 -1.768 GAL 2 H5 polymer 1 1 49 ? ? ?
PRD_900070 H19 H19 H 0 1 N N N 4.811 11.758 23.666 1.751 5.505 -0.636 GAL 2 H61 polymer 1 1 50 ? ? ?
PRD_900070 H20 H20 H 0 1 N N N 5.544 10.791 22.342 2.017 4.577 0.860 GAL 2 H62 polymer 1 1 51 ? ? ?
PRD_900070 H15 H15 H 0 1 N N N 9.074 10.470 25.907 -3.051 4.134 -0.654 GAL 2 HO3 polymer 1 1 52 ? ? ?
PRD_900070 H17 H17 H 0 1 N N N 7.180 11.265 22.851 0.140 4.832 1.449 GAL 2 HO4 polymer 1 1 53 ? ? ?
PRD_900070 H21 H21 H 0 1 N N N 3.228 10.748 22.309 4.011 4.756 -0.443 GAL 2 HO6 polymer 1 1 54 ? ? ?
PRD_900070 H1 H1 H 0 1 N N N 9.937 7.451 24.795 -3.560 1.379 0.572 FUC 3 H1 polymer 1 1 55 ? ? ?
PRD_900070 H2 H2 H 0 1 N N N 11.231 6.242 26.492 -5.046 -0.572 0.296 FUC 3 H2 polymer 1 1 56 ? ? ?
PRD_900070 H4 H4 H 0 1 N N N 8.571 5.709 27.827 -2.690 -1.803 -1.208 FUC 3 H3 polymer 1 1 57 ? ? ?
PRD_900070 H6 H6 H 0 1 N N N 8.821 3.427 27.351 -2.633 -3.420 0.651 FUC 3 H4 polymer 1 1 58 ? ? ?
PRD_900070 H8 H8 H 0 1 N N N 7.746 4.410 25.530 -1.233 -1.398 0.835 FUC 3 H5 polymer 1 1 59 ? ? ?
PRD_900070 H10 H10 H 0 1 N N N 10.082 2.828 24.456 -0.950 -1.386 3.267 FUC 3 H61 polymer 1 1 60 ? ? ?
PRD_900070 H11 H11 H 0 1 N N N 8.531 2.181 25.090 -2.594 -2.031 3.492 FUC 3 H62 polymer 1 1 61 ? ? ?
PRD_900070 H9 H9 H 0 1 N N N 8.546 3.169 23.590 -1.338 -3.040 2.735 FUC 3 H63 polymer 1 1 62 ? ? ?
PRD_900070 H3 H3 H 0 1 N N N 10.582 7.616 28.279 -4.886 0.972 -1.523 FUC 3 HO2 polymer 1 1 63 ? ? ?
PRD_900070 H5 H5 H 0 1 N N N 9.992 4.474 29.240 -4.862 -2.431 -1.988 FUC 3 HO3 polymer 1 1 64 ? ? ?
PRD_900070 H7 H7 H 0 1 N N N 10.735 2.733 26.170 -4.048 -2.974 2.524 FUC 3 HO4 polymer 1 1 65 ? ? ?
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PRD_900070 CA1 OA5 SING N N 1
PRD_900070 CA1 OA1 SING N N 2
PRD_900070 CA1 CA2 SING N N 3
PRD_900070 OA1 CB2 SING N N 4
PRD_900070 CA2 CA3 SING N N 5
PRD_900070 CA2 OA2 SING N N 6
PRD_900070 CA3 CA4 SING N N 7
PRD_900070 CA3 OA3 SING N N 8
PRD_900070 CA4 OA4 SING N N 9
PRD_900070 CA4 CA5 SING N N 10
PRD_900070 CA5 CA6 SING N N 11
PRD_900070 CA5 OA5 SING N N 12
PRD_900070 CB1 OB1 SING N N 13
PRD_900070 CB1 CB2 SING N N 14
PRD_900070 CB1 OB5 SING N N 15
PRD_900070 OB1 CC4 SING N N 16
PRD_900070 CB2 CB3 SING N N 17
PRD_900070 CB3 CB4 SING N N 18
PRD_900070 CB3 OB3 SING N N 19
PRD_900070 CB4 OB4 SING N N 20
PRD_900070 CB4 CB5 SING N N 21
PRD_900070 CB5 OB5 SING N N 22
PRD_900070 CB5 CB6 SING N N 23
PRD_900070 CB6 OB6 SING N N 24
PRD_900070 CC1 CC2 SING N N 25
PRD_900070 CC1 OC1 SING N N 26
PRD_900070 CC1 OC5 SING N N 27
PRD_900070 CC2 OC2 SING N N 28
PRD_900070 CC2 CC3 SING N N 29
PRD_900070 CC3 OC3 SING N N 30
PRD_900070 CC3 CC4 SING N N 31
PRD_900070 CC4 CC5 SING N N 32
PRD_900070 CC5 OC5 SING N N 33
PRD_900070 CC5 CC6 SING N N 34
PRD_900070 CC6 OC6 SING N N 35
PRD_900070 CA1 H1 SING N N 36
PRD_900070 CA2 H2 SING N N 37
PRD_900070 OA2 H3 SING N N 38
PRD_900070 CA3 H4 SING N N 39
PRD_900070 OA3 H5 SING N N 40
PRD_900070 CA4 H6 SING N N 41
PRD_900070 OA4 H7 SING N N 42
PRD_900070 CA5 H8 SING N N 43
PRD_900070 CA6 H9 SING N N 44
PRD_900070 CA6 H10 SING N N 45
PRD_900070 CA6 H11 SING N N 46
PRD_900070 CB1 H12 SING N N 47
PRD_900070 CB2 H13 SING N N 48
PRD_900070 CB3 H14 SING N N 49
PRD_900070 OB3 H15 SING N N 50
PRD_900070 CB4 H16 SING N N 51
PRD_900070 OB4 H17 SING N N 52
PRD_900070 CB5 H18 SING N N 53
PRD_900070 CB6 H19 SING N N 54
PRD_900070 CB6 H20 SING N N 55
PRD_900070 OB6 H21 SING N N 56
PRD_900070 CC1 H22 SING N N 57
PRD_900070 OC1 H23 SING N N 58
PRD_900070 CC2 H24 SING N N 59
PRD_900070 OC2 H25 SING N N 60
PRD_900070 CC3 H26 SING N N 61
PRD_900070 OC3 H27 SING N N 62
PRD_900070 CC4 H28 SING N N 63
PRD_900070 CC5 H29 SING N N 64
PRD_900070 CC6 H30 SING N N 65
PRD_900070 CC6 H31 SING N N 66
PRD_900070 OC6 H32 SING N N 67
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PRD_900070 InChI InChI 1.06 "InChI=1S/C18H32O15/c1-4-7(21)9(23)13(27)17(29-4)33-15-10(24)8(22)5(2-19)31-18(15)32-14-6(3-20)30-16(28)12(26)11(14)25/h4-28H,2-3H2,1H3/t4-,5+,6+,7+,8-,9+,10-,11+,12+,13-,14+,15+,16+,17-,18-/m0/s1"
PRD_900070 InChIKey InChI 1.06 SNFSYLYCDAVZGP-OHWKOEMOSA-N
PRD_900070 SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1O[C@@H](O[C@@H]2[C@@H](O)[C@@H](O)[C@@H](CO)O[C@H]2O[C@H]3[C@H](O)[C@@H](O)[C@H](O)O[C@@H]3CO)[C@@H](O)[C@H](O)[C@@H]1O"
PRD_900070 SMILES CACTVS 3.385 "C[CH]1O[CH](O[CH]2[CH](O)[CH](O)[CH](CO)O[CH]2O[CH]3[CH](O)[CH](O)[CH](O)O[CH]3CO)[CH](O)[CH](O)[CH]1O"
PRD_900070 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O[C@@H]2[C@H]([C@H]([C@H](O[C@H]2O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)O)O)CO)CO)O)O)O)O)O"
PRD_900070 SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C(C(C(O1)OC2C(C(C(OC2OC3C(OC(C(C3O)O)O)CO)CO)O)O)O)O)O"
#
_pdbx_chem_comp_identifier.comp_id PRD_900070
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
;(2~{S},3~{S},4~{R},5~{S},6~{S})-2-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-2-[(2~{R},3~{S},4~{R},5~{R},6~{R})
-2-(hydroxymethyl)-4,5,6-tris(oxidanyl)oxan-3-yl]oxy-4,5-bis(oxidanyl)oxan-3-yl]oxy-6-methyl-oxane-3,4,5-triol
;
#