data_PRDCC_900073 # _chem_comp.id PRD_900073 _chem_comp.name ;(2~{R},3~{R},4~{S},5~{S},6~{R})-2-[(2~{R},3~{R},4~{R},5~{S},6~{S})-4-fluoranyl-2-(hydroxymethyl)-5,6-bis(oxidanyl)oxan- 3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol ; _chem_comp.type saccharide _chem_comp.formula "C12 H21 F O10" _chem_comp.pdbx_release_status REF_ONLY _chem_comp.formula_weight 344.288 _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_pcm ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_900073 "F3'" F1 F 0 1 N N N 8.639 13.288 12.499 1.703 -2.078 1.258 TUP 1 F3 polymer 1 1 1 ? ? ? PRD_900073 "C3'" C1 C 0 1 N N R 9.805 13.171 11.777 2.157 -1.133 0.331 TUP 1 C3 polymer 1 1 2 ? ? ? PRD_900073 "C2'" C2 C 0 1 N N S 10.298 11.731 11.940 3.475 -0.526 0.821 TUP 1 C2 polymer 1 1 3 ? ? ? PRD_900073 "O2'" O1 O 0 1 N N N 9.316 10.822 11.414 4.474 -1.547 0.891 TUP 1 O2 polymer 1 1 4 ? ? ? PRD_900073 "C1'" C3 C 0 1 N N S 11.657 11.533 11.259 3.923 0.561 -0.160 TUP 1 C1 polymer 1 1 5 ? ? ? PRD_900073 "O1'" O2 O 0 1 N N N 11.550 11.692 9.844 4.164 -0.023 -1.441 TUP 1 O1 polymer 1 1 6 ? ? ? PRD_900073 "O5'" O3 O 0 1 N N N 12.590 12.474 11.803 2.898 1.551 -0.272 TUP 1 O5 polymer 1 1 7 ? ? ? PRD_900073 "C5'" C4 C 0 1 N N R 12.246 13.860 11.623 1.656 1.050 -0.770 TUP 1 C5 polymer 1 1 8 ? ? ? PRD_900073 "C6'" C5 C 0 1 N N N 13.379 14.716 12.200 0.649 2.197 -0.874 TUP 1 C6 polymer 1 1 9 ? ? ? PRD_900073 "O6'" O4 O 0 1 N N N 13.444 14.639 13.638 1.103 3.144 -1.843 TUP 1 O6 polymer 1 1 10 ? ? ? PRD_900073 "C4'" C6 C 0 1 N N R 10.868 14.187 12.231 1.117 -0.017 0.185 TUP 1 C4 polymer 1 1 11 ? ? ? PRD_900073 O1 O5 O 0 1 N N N 10.502 15.542 11.870 -0.095 -0.561 -0.340 TUP 1 O4 polymer 1 1 12 ? ? ? PRD_900073 C1 C7 C 0 1 N N R 9.722 16.247 12.859 -0.950 -1.138 0.648 GLC 2 C1 polymer 1 1 13 ? ? ? PRD_900073 C2 C8 C 0 1 N N R 9.180 17.555 12.285 -2.048 -1.954 -0.039 GLC 2 C2 polymer 1 1 14 ? ? ? PRD_900073 C3 C12 C 0 1 N N S 10.351 18.501 12.028 -2.902 -1.020 -0.904 GLC 2 C3 polymer 1 1 15 ? ? ? PRD_900073 C4 C11 C 0 1 N N S 11.085 18.791 13.333 -3.472 0.095 -0.021 GLC 2 C4 polymer 1 1 16 ? ? ? PRD_900073 C5 C9 C 0 1 N N R 11.531 17.458 13.968 -2.319 0.831 0.666 GLC 2 C5 polymer 1 1 17 ? ? ? PRD_900073 C6 C10 C 0 1 N N N 12.138 17.628 15.350 -2.883 1.908 1.595 GLC 2 C6 polymer 1 1 18 ? ? ? PRD_900073 O2 O6 O 0 1 N N N 8.436 17.315 11.080 -1.452 -2.956 -0.865 GLC 2 O2 polymer 1 1 19 ? ? ? PRD_900073 O3 O10 O 0 1 N N N 9.842 19.673 11.413 -3.974 -1.760 -1.492 GLC 2 O3 polymer 1 1 20 ? ? ? PRD_900073 O4 O9 O 0 1 N N N 12.241 19.579 13.046 -4.210 1.013 -0.830 GLC 2 O4 polymer 1 1 21 ? ? ? PRD_900073 O5 O7 O 0 1 N N N 10.453 16.515 14.071 -1.547 -0.099 1.428 GLC 2 O5 polymer 1 1 22 ? ? ? PRD_900073 O6 O8 O 0 1 N N N 11.136 18.103 16.239 -1.808 2.671 2.148 GLC 2 O6 polymer 1 1 23 ? ? ? PRD_900073 H1 H1 H 0 1 N N N 9.607 13.344 10.709 2.314 -1.615 -0.634 TUP 1 H3 polymer 1 1 24 ? ? ? PRD_900073 H2 H2 H 0 1 N N N 10.428 11.538 13.015 3.330 -0.089 1.808 TUP 1 H2 polymer 1 1 25 ? ? ? PRD_900073 H3 H3 H 0 1 N N N 9.624 9.929 11.516 5.336 -1.233 1.194 TUP 1 HO2 polymer 1 1 26 ? ? ? PRD_900073 H4 H4 H 0 1 N N N 12.001 10.513 11.484 4.839 1.026 0.206 TUP 1 H1 polymer 1 1 27 ? ? ? PRD_900073 H5 H5 H 0 1 N N N 12.403 11.565 9.445 4.452 0.610 -2.114 TUP 1 HO1 polymer 1 1 28 ? ? ? PRD_900073 H6 H6 H 0 1 N N N 12.188 14.071 10.545 1.811 0.612 -1.756 TUP 1 H5 polymer 1 1 29 ? ? ? PRD_900073 H7 H7 H 0 1 N N N 14.335 14.365 11.783 -0.321 1.803 -1.178 TUP 1 H61 polymer 1 1 30 ? ? ? PRD_900073 H8 H8 H 0 1 N N N 13.214 15.764 11.909 0.554 2.687 0.095 TUP 1 H62 polymer 1 1 31 ? ? ? PRD_900073 H9 H9 H 0 1 N N N 14.157 15.182 13.953 0.512 3.900 -1.962 TUP 1 HO6 polymer 1 1 32 ? ? ? PRD_900073 H10 H10 H 0 1 N N N 10.956 14.118 13.325 0.925 0.430 1.160 TUP 1 H4 polymer 1 1 33 ? ? ? PRD_900073 H11 H11 H 0 1 N N N 8.853 15.623 13.115 -0.366 -1.790 1.298 GLC 2 H1 polymer 1 1 34 ? ? ? PRD_900073 H12 H12 H 0 1 N N N 8.522 18.016 13.037 -2.676 -2.428 0.715 GLC 2 H2 polymer 1 1 35 ? ? ? PRD_900073 H20 H20 H 0 1 N N N 11.052 18.000 11.344 -2.284 -0.584 -1.689 GLC 2 H3 polymer 1 1 36 ? ? ? PRD_900073 H18 H18 H 0 1 N N N 10.412 19.317 14.026 -4.129 -0.336 0.733 GLC 2 H4 polymer 1 1 37 ? ? ? PRD_900073 H14 H14 H 0 1 N N N 12.308 17.031 13.316 -1.684 1.298 -0.088 GLC 2 H5 polymer 1 1 38 ? ? ? PRD_900073 H15 H15 H 0 1 N N N 12.519 16.660 15.707 -3.542 2.567 1.030 GLC 2 H61 polymer 1 1 39 ? ? ? PRD_900073 H16 H16 H 0 1 N N N 12.964 18.353 15.304 -3.444 1.435 2.401 GLC 2 H62 polymer 1 1 40 ? ? ? PRD_900073 H13 H13 H 0 1 N N N 8.108 18.139 10.740 -0.893 -3.581 -0.383 GLC 2 HO2 polymer 1 1 41 ? ? ? PRD_900073 H21 H21 H 0 1 N N N 10.555 20.277 11.243 -3.684 -2.487 -2.059 GLC 2 HO3 polymer 1 1 42 ? ? ? PRD_900073 H19 H19 H 0 1 N N N 11.974 20.402 12.654 -4.957 0.614 -1.296 GLC 2 HO4 polymer 1 1 43 ? ? ? PRD_900073 H17 H17 H 0 1 N N N 11.508 18.212 17.106 -2.092 3.373 2.748 GLC 2 HO6 polymer 1 1 44 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_900073 "F3'" "C3'" SING N N 1 PRD_900073 "C3'" "C2'" SING N N 2 PRD_900073 "C3'" "C4'" SING N N 3 PRD_900073 "C2'" "C1'" SING N N 4 PRD_900073 "C2'" "O2'" SING N N 5 PRD_900073 "C1'" "O1'" SING N N 6 PRD_900073 "C1'" "O5'" SING N N 7 PRD_900073 "O5'" "C5'" SING N N 8 PRD_900073 "C5'" "C4'" SING N N 9 PRD_900073 "C5'" "C6'" SING N N 10 PRD_900073 "C6'" "O6'" SING N N 11 PRD_900073 "C4'" O1 SING N N 12 PRD_900073 O1 C1 SING N N 13 PRD_900073 C1 C2 SING N N 14 PRD_900073 C1 O5 SING N N 15 PRD_900073 C2 O2 SING N N 16 PRD_900073 C2 C3 SING N N 17 PRD_900073 O5 C5 SING N N 18 PRD_900073 C5 C4 SING N N 19 PRD_900073 C5 C6 SING N N 20 PRD_900073 C6 O6 SING N N 21 PRD_900073 C4 O4 SING N N 22 PRD_900073 C4 C3 SING N N 23 PRD_900073 C3 O3 SING N N 24 PRD_900073 "C3'" H1 SING N N 25 PRD_900073 "C2'" H2 SING N N 26 PRD_900073 "O2'" H3 SING N N 27 PRD_900073 "C1'" H4 SING N N 28 PRD_900073 "O1'" H5 SING N N 29 PRD_900073 "C5'" H6 SING N N 30 PRD_900073 "C6'" H7 SING N N 31 PRD_900073 "C6'" H8 SING N N 32 PRD_900073 "O6'" H9 SING N N 33 PRD_900073 "C4'" H10 SING N N 34 PRD_900073 C1 H11 SING N N 35 PRD_900073 C2 H12 SING N N 36 PRD_900073 O2 H13 SING N N 37 PRD_900073 C5 H14 SING N N 38 PRD_900073 C6 H15 SING N N 39 PRD_900073 C6 H16 SING N N 40 PRD_900073 O6 H17 SING N N 41 PRD_900073 C4 H18 SING N N 42 PRD_900073 O4 H19 SING N N 43 PRD_900073 C3 H20 SING N N 44 PRD_900073 O3 H21 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_900073 InChI InChI 1.06 "InChI=1S/C12H21FO10/c13-5-7(17)11(20)21-4(2-15)10(5)23-12-9(19)8(18)6(16)3(1-14)22-12/h3-12,14-20H,1-2H2/t3-,4-,5-,6-,7-,8+,9-,10-,11+,12-/m1/s1" PRD_900073 InChIKey InChI 1.06 VTFMBBVCESUVNC-MZIZBZDASA-N PRD_900073 SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@H](O[C@H]2[C@H](F)[C@@H](O)[C@@H](O)O[C@@H]2CO)[C@H](O)[C@@H](O)[C@@H]1O" PRD_900073 SMILES CACTVS 3.385 "OC[CH]1O[CH](O[CH]2[CH](F)[CH](O)[CH](O)O[CH]2CO)[CH](O)[CH](O)[CH]1O" PRD_900073 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O[C@@H]2[C@H](O[C@@H]([C@@H]([C@H]2F)O)O)CO)O)O)O)O" PRD_900073 SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)OC2C(OC(C(C2F)O)O)CO)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id PRD_900073 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier ;(2~{R},3~{R},4~{S},5~{S},6~{R})-2-[(2~{R},3~{R},4~{R},5~{S},6~{S})-4-fluoranyl-2-(hydroxymethyl)-5,6-bis(oxidanyl)oxan- 3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol ; #