data_PRDCC_900076
#
_chem_comp.id PRD_900076
_chem_comp.name "METHYL 4-O-L-GLUCOPYRANOSYL-ALPHA-L-RIBO-HEXOPYRANOSIDE"
_chem_comp.type saccharide
_chem_comp.formula "C13 H24 O11"
_chem_comp.pdbx_release_status REF_ONLY
_chem_comp.formula_weight 356.323
_chem_comp.pdbx_type ?
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge ?
_chem_comp.pdbx_initial_date ?
_chem_comp.pdbx_modified_date ?
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ?
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag ?
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag ?
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_pcm ?
_chem_comp.pdbx_processing_site ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_residue_numbering
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_polymer_type
_chem_comp_atom.pdbx_ref_id
_chem_comp_atom.pdbx_component_id
_chem_comp_atom.pdbx_ordinal
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
PRD_900076 CAV C10 C 0 1 N N R 18.950 69.089 46.690 -3.679 0.491 -0.304 MGL 1 C1 polymer 1 1 1 ? ? ?
PRD_900076 CAR C9 C 0 1 N N R 19.899 68.008 47.209 -2.539 1.488 -0.083 MGL 1 C2 polymer 1 1 2 ? ? ?
PRD_900076 CAS C8 C 0 1 N N R 19.507 66.653 46.614 -1.234 0.885 -0.611 MGL 1 C3 polymer 1 1 3 ? ? ?
PRD_900076 CAX C7 C 0 1 N N S 18.037 66.333 46.905 -0.981 -0.452 0.092 MGL 1 C4 polymer 1 1 4 ? ? ?
PRD_900076 CAU C12 C 0 1 N N R 17.189 67.508 46.436 -2.181 -1.375 -0.136 MGL 1 C5 polymer 1 1 5 ? ? ?
PRD_900076 CAJ C13 C 0 1 N N N 15.715 67.248 46.757 -1.963 -2.691 0.613 MGL 1 C6 polymer 1 1 6 ? ? ?
PRD_900076 CAA C11 C 0 1 N N N 18.599 71.403 46.603 -6.043 0.218 -0.016 MGL 1 C7 polymer 1 1 7 ? ? ?
PRD_900076 OAK O9 O 0 1 N N N 19.303 70.353 47.271 -4.890 1.023 0.237 MGL 1 O1 polymer 1 1 8 ? ? ?
PRD_900076 OAG O8 O 0 1 N N N 21.238 68.327 46.820 -2.823 2.701 -0.782 MGL 1 O2 polymer 1 1 9 ? ? ?
PRD_900076 OAH O7 O 0 1 N N N 20.344 65.647 47.190 -0.151 1.778 -0.342 MGL 1 O3 polymer 1 1 10 ? ? ?
PRD_900076 O1 O6 O 0 1 N N N 17.587 65.148 46.228 0.197 -1.058 -0.444 MGL 1 O4 polymer 1 1 11 ? ? ?
PRD_900076 OAM O10 O 0 1 N N N 17.608 68.733 47.062 -3.366 -0.741 0.350 MGL 1 O5 polymer 1 1 12 ? ? ?
PRD_900076 OAC O11 O 0 1 N N N 15.550 67.070 48.166 -3.026 -3.595 0.307 MGL 1 O6 polymer 1 1 13 ? ? ?
PRD_900076 C1 C6 C 0 1 N N S 18.159 63.948 46.772 1.399 -0.695 0.238 GAL 2 C1 polymer 1 1 14 ? ? ?
PRD_900076 C2 C1 C 0 1 N N R 17.264 62.760 46.409 2.573 -1.492 -0.336 GAL 2 C2 polymer 1 1 15 ? ? ?
PRD_900076 C3 C2 C 0 1 N N S 17.907 61.452 46.878 3.866 -1.054 0.358 GAL 2 C3 polymer 1 1 16 ? ? ?
PRD_900076 C4 C3 C 0 1 N N R 19.329 61.340 46.326 4.044 0.456 0.175 GAL 2 C4 polymer 1 1 17 ? ? ?
PRD_900076 C5 C4 C 0 1 N N R 20.121 62.590 46.720 2.814 1.178 0.730 GAL 2 C5 polymer 1 1 18 ? ? ?
PRD_900076 C6 C5 C 0 1 N N N 21.546 62.524 46.168 2.957 2.683 0.497 GAL 2 C6 polymer 1 1 19 ? ? ?
PRD_900076 O2 O1 O 0 1 N N N 15.975 62.914 47.008 2.359 -2.887 -0.111 GAL 2 O2 polymer 1 1 20 ? ? ?
PRD_900076 O3 O2 O 0 1 N N N 17.129 60.347 46.409 4.977 -1.742 -0.221 GAL 2 O3 polymer 1 1 21 ? ? ?
PRD_900076 O4 O3 O 0 1 N N N 19.268 61.251 44.899 4.187 0.755 -1.215 GAL 2 O4 polymer 1 1 22 ? ? ?
PRD_900076 O5 O5 O 0 1 N N N 19.462 63.755 46.196 1.643 0.702 0.063 GAL 2 O5 polymer 1 1 23 ? ? ?
PRD_900076 O6 O4 O 0 1 N N N 22.249 63.714 46.537 1.867 3.368 1.117 GAL 2 O6 polymer 1 1 24 ? ? ?
PRD_900076 HAV H17 H 0 1 N N N 19.036 69.140 45.595 -3.805 0.313 -1.372 MGL 1 H1 polymer 1 1 25 ? ? ?
PRD_900076 HAR H15 H 0 1 N N N 19.819 67.956 48.305 -2.439 1.696 0.983 MGL 1 H2 polymer 1 1 26 ? ? ?
PRD_900076 HAS H13 H 0 1 N N N 19.652 66.689 45.524 -1.316 0.722 -1.685 MGL 1 H3 polymer 1 1 27 ? ? ?
PRD_900076 HAX H12 H 0 1 N N N 17.910 66.216 47.991 -0.850 -0.283 1.161 MGL 1 H4 polymer 1 1 28 ? ? ?
PRD_900076 HAU H21 H 0 1 N N N 17.294 67.598 45.345 -2.287 -1.577 -1.202 MGL 1 H5 polymer 1 1 29 ? ? ?
PRD_900076 HAJ1 H22 H 0 1 N N N 15.112 68.106 46.424 -1.013 -3.130 0.307 MGL 1 H61 polymer 1 1 30 ? ? ?
PRD_900076 HAJ2 H23 H 0 1 N N N 15.382 66.340 46.233 -1.946 -2.500 1.686 MGL 1 H62 polymer 1 1 31 ? ? ?
PRD_900076 HAA1 H18 H 0 1 N N N 18.871 72.370 47.050 -6.188 0.118 -1.092 MGL 1 H71 polymer 1 1 32 ? ? ?
PRD_900076 HAA2 H19 H 0 1 N N N 18.868 71.404 45.536 -5.901 -0.769 0.425 MGL 1 H72 polymer 1 1 33 ? ? ?
PRD_900076 HAA3 H20 H 0 1 N N N 17.516 71.243 46.708 -6.920 0.690 0.427 MGL 1 H73 polymer 1 1 34 ? ? ?
PRD_900076 HAG H16 H 0 1 N N N 21.483 69.168 47.188 -3.640 3.135 -0.501 MGL 1 HO2 polymer 1 1 35 ? ? ?
PRD_900076 HAH H14 H 0 1 N N N 21.254 65.849 47.007 -0.246 2.647 -0.757 MGL 1 HO3 polymer 1 1 36 ? ? ?
PRD_900076 HAC H24 H 0 1 N N N 14.634 66.909 48.360 -2.953 -4.453 0.748 MGL 1 HO6 polymer 1 1 37 ? ? ?
PRD_900076 H1 H11 H 0 1 N N N 18.232 64.021 47.867 1.295 -0.916 1.301 GAL 2 H1 polymer 1 1 38 ? ? ?
PRD_900076 H2 H2 H 0 1 N N N 17.163 62.724 45.314 2.652 -1.304 -1.407 GAL 2 H2 polymer 1 1 39 ? ? ?
PRD_900076 H3 H3 H 0 1 N N N 17.950 61.450 47.977 3.807 -1.288 1.421 GAL 2 H3 polymer 1 1 40 ? ? ?
PRD_900076 H4 H5 H 0 1 N N N 19.817 60.451 46.752 4.933 0.786 0.713 GAL 2 H4 polymer 1 1 41 ? ? ?
PRD_900076 H5 H7 H 0 1 N N N 20.169 62.646 47.818 2.728 0.982 1.799 GAL 2 H5 polymer 1 1 42 ? ? ?
PRD_900076 H61 H8 H 0 1 N N N 21.512 62.442 45.072 3.896 3.030 0.929 GAL 2 H61 polymer 1 1 43 ? ? ?
PRD_900076 H62 H9 H 0 1 N N N 22.062 61.647 46.586 2.953 2.887 -0.574 GAL 2 H62 polymer 1 1 44 ? ? ?
PRD_900076 HO2 H1 H 0 1 N N N 15.427 62.173 46.777 1.553 -3.233 -0.519 GAL 2 HO2 polymer 1 1 45 ? ? ?
PRD_900076 HO3 H4 H 0 1 N N N 16.245 60.414 46.750 4.925 -2.705 -0.147 GAL 2 HO3 polymer 1 1 46 ? ? ?
PRD_900076 HO4 H6 H 0 1 N N N 18.777 60.477 44.650 4.949 0.329 -1.632 GAL 2 HO4 polymer 1 1 47 ? ? ?
PRD_900076 HO6 H10 H 0 1 N N N 23.135 63.677 46.196 1.893 4.328 1.009 GAL 2 HO6 polymer 1 1 48 ? ? ?
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PRD_900076 O4 C4 SING N N 1
PRD_900076 C6 O6 SING N N 2
PRD_900076 C6 C5 SING N N 3
PRD_900076 O5 C5 SING N N 4
PRD_900076 O5 C1 SING N N 5
PRD_900076 O1 C1 SING N N 6
PRD_900076 O1 CAX SING N N 7
PRD_900076 C4 C5 SING N N 8
PRD_900076 C4 C3 SING N N 9
PRD_900076 C2 C1 SING N N 10
PRD_900076 C2 C3 SING N N 11
PRD_900076 C2 O2 SING N N 12
PRD_900076 O3 C3 SING N N 13
PRD_900076 CAU CAJ SING N N 14
PRD_900076 CAU CAX SING N N 15
PRD_900076 CAU OAM SING N N 16
PRD_900076 CAA OAK SING N N 17
PRD_900076 CAS CAX SING N N 18
PRD_900076 CAS OAH SING N N 19
PRD_900076 CAS CAR SING N N 20
PRD_900076 CAV OAM SING N N 21
PRD_900076 CAV CAR SING N N 22
PRD_900076 CAV OAK SING N N 23
PRD_900076 CAJ OAC SING N N 24
PRD_900076 OAG CAR SING N N 25
PRD_900076 O2 HO2 SING N N 26
PRD_900076 C2 H2 SING N N 27
PRD_900076 C3 H3 SING N N 28
PRD_900076 O3 HO3 SING N N 29
PRD_900076 C4 H4 SING N N 30
PRD_900076 O4 HO4 SING N N 31
PRD_900076 C5 H5 SING N N 32
PRD_900076 C6 H61 SING N N 33
PRD_900076 C6 H62 SING N N 34
PRD_900076 O6 HO6 SING N N 35
PRD_900076 C1 H1 SING N N 36
PRD_900076 CAX HAX SING N N 37
PRD_900076 CAS HAS SING N N 38
PRD_900076 OAH HAH SING N N 39
PRD_900076 CAR HAR SING N N 40
PRD_900076 OAG HAG SING N N 41
PRD_900076 CAV HAV SING N N 42
PRD_900076 CAA HAA1 SING N N 43
PRD_900076 CAA HAA2 SING N N 44
PRD_900076 CAA HAA3 SING N N 45
PRD_900076 CAU HAU SING N N 46
PRD_900076 CAJ HAJ1 SING N N 47
PRD_900076 CAJ HAJ2 SING N N 48
PRD_900076 OAC HAC SING N N 49
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PRD_900076 SMILES ACDLabs 12.01 "C1(OC(C(C(C1O)O)OC2C(C(C(C(CO)O2)O)O)O)CO)OC"
PRD_900076 InChI InChI 1.03
;InChI=1S/C13H24O11/c1-21-12-10(20)8(18)11(5(3-15)23-12)24-13-9(19)7(17)6(16)4(2-14)22-13/h4-20H,2-3H2,1H3/t4-,5-,6+,7+,
8-,9-,10-,11-,12-,13+/m1/s1
;
PRD_900076 InChIKey InChI 1.03 FHNIYFZSHCGBPP-ABBMIVAOSA-N
PRD_900076 SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]1O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O"
PRD_900076 SMILES CACTVS 3.385 "CO[CH]1O[CH](CO)[CH](O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH](O)[CH]1O"
PRD_900076 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)O)O)O)O"
PRD_900076 SMILES "OpenEye OEToolkits" 2.0.7 "COC1C(C(C(C(O1)CO)OC2C(C(C(C(O2)CO)O)O)O)O)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PRD_900076 "SYSTEMATIC NAME" ACDLabs 12.01 "methyl 4-O-beta-D-galactopyranosyl-beta-D-glucopyranoside"
PRD_900076 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7
;(2~{R},3~{R},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{S},4~{R},5~{R},6~{R})-2-(hydroxymethyl)-6-methoxy-4,5-bi
s(oxidanyl)oxan-3-yl]oxy-oxane-3,4,5-triol
;
#