data_PRDCC_900084
#
_chem_comp.id PRD_900084
_chem_comp.name "2-(acetylamino)-2-deoxy-3-O-beta-D-galactopyranosyl-alpha-D-galactopyranose"
_chem_comp.type saccharide
_chem_comp.formula "C14 H25 N O11"
_chem_comp.pdbx_release_status REF_ONLY
_chem_comp.formula_weight 383.348
_chem_comp.pdbx_type ?
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge ?
_chem_comp.pdbx_initial_date ?
_chem_comp.pdbx_modified_date ?
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ?
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag ?
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag ?
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_pcm ?
_chem_comp.pdbx_processing_site ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_residue_numbering
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_polymer_type
_chem_comp_atom.pdbx_ref_id
_chem_comp_atom.pdbx_component_id
_chem_comp_atom.pdbx_ordinal
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
PRD_900084 O11 O3 O 0 1 N N N -4.765 7.189 -7.659 -3.368 1.319 -0.252 A2G 1 O polymer 1 1 1 ? ? ?
PRD_900084 C12 C11 C 0 1 N N S -4.079 5.959 -7.713 -3.375 0.034 0.375 A2G 1 C1 polymer 1 1 2 ? ? ?
PRD_900084 O13 O4 O 0 1 N N N -2.779 6.158 -8.212 -3.240 0.192 1.788 A2G 1 O1 polymer 1 1 3 ? ? ?
PRD_900084 C05 C6 C 0 1 N N R -4.802 4.974 -8.608 -2.208 -0.799 -0.160 A2G 1 C2 polymer 1 1 4 ? ? ?
PRD_900084 N04 N1 N 0 1 N N N -3.980 3.824 -8.775 -2.177 -2.095 0.524 A2G 1 N2 polymer 1 1 5 ? ? ?
PRD_900084 C06 C7 C 0 1 N N R -5.078 5.586 -9.967 -0.896 -0.052 0.101 A2G 1 C3 polymer 1 1 6 ? ? ?
PRD_900084 O15 O6 O 0 1 N N N -5.918 4.715 -10.694 0.193 -0.788 -0.460 A2G 1 O3 polymer 1 1 7 ? ? ?
PRD_900084 C07 C8 C 0 1 N N R -5.779 6.912 -9.795 -0.970 1.331 -0.553 A2G 1 C4 polymer 1 1 8 ? ? ?
PRD_900084 O14 O5 O 0 1 N N N -7.035 6.693 -9.200 -1.100 1.184 -1.968 A2G 1 O4 polymer 1 1 9 ? ? ?
PRD_900084 C08 C9 C 0 1 N N R -4.945 7.809 -8.909 -2.186 2.082 -0.003 A2G 1 C5 polymer 1 1 10 ? ? ?
PRD_900084 C09 C10 C 0 1 N N N -5.642 9.138 -8.718 -2.302 3.442 -0.696 A2G 1 C6 polymer 1 1 11 ? ? ?
PRD_900084 O10 O2 O 0 1 N N N -4.833 9.991 -7.936 -3.365 4.190 -0.102 A2G 1 O6 polymer 1 1 12 ? ? ?
PRD_900084 C02 C5 C 0 1 N N N -4.535 2.518 -8.793 -2.934 -3.113 0.070 A2G 1 C7 polymer 1 1 13 ? ? ?
PRD_900084 O03 O1 O 0 1 N N N -5.731 2.372 -8.665 -3.641 -2.958 -0.903 A2G 1 O7 polymer 1 1 14 ? ? ?
PRD_900084 C01 C4 C 0 1 N N N -3.647 1.301 -8.976 -2.903 -4.446 0.773 A2G 1 C8 polymer 1 1 15 ? ? ?
PRD_900084 C16 C12 C 0 1 N N R -5.654 4.697 -12.080 1.429 -0.618 0.237 GAL 2 C1 polymer 1 1 16 ? ? ?
PRD_900084 C17 C1 C 0 1 N N R -5.687 3.259 -12.537 2.488 -1.542 -0.370 GAL 2 C2 polymer 1 1 17 ? ? ?
PRD_900084 C18 C13 C 0 1 N N S -5.507 3.189 -14.035 3.825 -1.311 0.341 GAL 2 C3 polymer 1 1 18 ? ? ?
PRD_900084 C19 C14 C 0 1 N N R -6.584 4.021 -14.688 4.206 0.168 0.221 GAL 2 C4 polymer 1 1 19 ? ? ?
PRD_900084 C20 C2 C 0 1 N N R -6.478 5.435 -14.165 3.080 1.026 0.805 GAL 2 C5 polymer 1 1 20 ? ? ?
PRD_900084 C21 C3 C 0 1 N N N -7.552 6.288 -14.811 3.426 2.506 0.635 GAL 2 C6 polymer 1 1 21 ? ? ?
PRD_900084 O26 O11 O 0 1 N N N -4.641 2.560 -11.912 2.087 -2.904 -0.203 GAL 2 O2 polymer 1 1 22 ? ? ?
PRD_900084 O25 O10 O 0 1 N N N -5.598 1.851 -14.466 4.836 -2.116 -0.268 GAL 2 O3 polymer 1 1 23 ? ? ?
PRD_900084 O24 O9 O 0 1 N N N -7.848 3.499 -14.365 4.395 0.502 -1.155 GAL 2 O4 polymer 1 1 24 ? ? ?
PRD_900084 O23 O8 O 0 1 N N N -6.635 5.437 -12.763 1.860 0.739 0.119 GAL 2 O5 polymer 1 1 25 ? ? ?
PRD_900084 O22 O7 O 0 1 N N N -8.821 5.901 -14.333 2.434 3.305 1.282 GAL 2 O6 polymer 1 1 26 ? ? ?
PRD_900084 H121 H16 H 0 0 N N N -4.023 5.526 -6.704 -4.315 -0.473 0.154 A2G 1 H1 polymer 1 1 27 ? ? ?
PRD_900084 H131 H17 H 0 0 N N N -2.317 6.775 -7.657 -3.947 0.711 2.195 A2G 1 HO1 polymer 1 1 28 ? ? ?
PRD_900084 H051 H9 H 0 0 N N N -5.757 4.696 -8.139 -2.331 -0.955 -1.232 A2G 1 H2 polymer 1 1 29 ? ? ?
PRD_900084 H041 H8 H 0 0 N N N -2.992 3.939 -8.882 -1.613 -2.219 1.302 A2G 1 HN2 polymer 1 1 30 ? ? ?
PRD_900084 H061 H10 H 0 0 N N N -4.126 5.742 -10.496 -0.747 0.058 1.175 A2G 1 H3 polymer 1 1 31 ? ? ?
PRD_900084 H071 H11 H 0 0 N N N -5.896 7.388 -10.780 -0.062 1.890 -0.326 A2G 1 H4 polymer 1 1 32 ? ? ?
PRD_900084 H141 H18 H 0 0 N N N -7.482 7.524 -9.089 -1.153 2.022 -2.448 A2G 1 HO4 polymer 1 1 33 ? ? ?
PRD_900084 H081 H12 H 0 0 N N N -3.973 7.983 -9.393 -2.067 2.230 1.070 A2G 1 H5 polymer 1 1 34 ? ? ?
PRD_900084 H092 H14 H 0 0 N N N -6.603 8.977 -8.208 -2.509 3.293 -1.755 A2G 1 H6 polymer 1 1 35 ? ? ?
PRD_900084 H011 H7 H 0 0 N N N -2.914 1.256 -8.157 -3.869 -4.938 0.661 A2G 1 H8 polymer 1 1 36 ? ? ?
PRD_900084 H012 H5 H 0 0 N N N -4.265 0.391 -8.965 -2.125 -5.070 0.335 A2G 1 H8A polymer 1 1 37 ? ? ?
PRD_900084 H013 H6 H 0 0 N N N -3.119 1.374 -9.938 -2.694 -4.293 1.832 A2G 1 H8B polymer 1 1 38 ? ? ?
PRD_900084 H091 H13 H 0 0 N N N -5.821 9.602 -9.699 -1.365 3.988 -0.582 A2G 1 H14 polymer 1 1 39 ? ? ?
PRD_900084 H101 H15 H 0 0 N N N -5.273 10.825 -7.818 -3.496 5.064 -0.492 A2G 1 H15 polymer 1 1 40 ? ? ?
PRD_900084 H161 H19 H 0 0 N N N -4.655 5.111 -12.282 1.291 -0.866 1.289 GAL 2 H1 polymer 1 1 41 ? ? ?
PRD_900084 H171 H1 H 0 0 N N N -6.659 2.819 -12.271 2.598 -1.322 -1.432 GAL 2 H2 polymer 1 1 42 ? ? ?
PRD_900084 H181 H20 H 0 0 N N N -4.524 3.609 -14.296 3.729 -1.580 1.393 GAL 2 H3 polymer 1 1 43 ? ? ?
PRD_900084 H191 H21 H 0 0 N N N -6.430 4.025 -15.777 5.128 0.352 0.772 GAL 2 H4 polymer 1 1 44 ? ? ?
PRD_900084 H201 H2 H 0 0 N N N -5.493 5.841 -14.438 2.963 0.799 1.865 GAL 2 H5 polymer 1 1 45 ? ? ?
PRD_900084 H211 H4 H 0 0 N N N -7.517 6.155 -15.902 3.455 2.753 -0.426 GAL 2 H61 polymer 1 1 46 ? ? ?
PRD_900084 H212 H3 H 0 0 N N N -7.376 7.345 -14.565 4.400 2.705 1.081 GAL 2 H62 polymer 1 1 47 ? ? ?
PRD_900084 H261 H25 H 0 0 N N N -4.653 1.653 -12.193 1.245 -3.120 -0.625 GAL 2 HO2 polymer 1 1 48 ? ? ?
PRD_900084 H251 H24 H 0 0 N N N -5.484 1.813 -15.408 4.656 -3.066 -0.234 GAL 2 HO3 polymer 1 1 49 ? ? ?
PRD_900084 H241 H23 H 0 0 N N N -7.917 2.610 -14.693 5.095 -0.005 -1.590 GAL 2 HO4 polymer 1 1 50 ? ? ?
PRD_900084 H221 H22 H 0 0 N N N -9.491 6.438 -14.740 2.589 4.257 1.215 GAL 2 HO6 polymer 1 1 51 ? ? ?
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PRD_900084 C17 C16 SING N N 1
PRD_900084 C17 C18 SING N N 2
PRD_900084 C17 O26 SING N N 3
PRD_900084 C20 C19 SING N N 4
PRD_900084 C20 C21 SING N N 5
PRD_900084 C20 O23 SING N N 6
PRD_900084 C21 O22 SING N N 7
PRD_900084 C01 C02 SING N N 8
PRD_900084 C02 O03 DOUB N N 9
PRD_900084 C02 N04 SING N N 10
PRD_900084 N04 C05 SING N N 11
PRD_900084 C05 C06 SING N N 12
PRD_900084 C05 C12 SING N N 13
PRD_900084 C06 O15 SING N N 14
PRD_900084 C06 C07 SING N N 15
PRD_900084 C07 O14 SING N N 16
PRD_900084 C07 C08 SING N N 17
PRD_900084 C08 C09 SING N N 18
PRD_900084 C08 O11 SING N N 19
PRD_900084 C09 O10 SING N N 20
PRD_900084 O11 C12 SING N N 21
PRD_900084 C12 O13 SING N N 22
PRD_900084 O15 C16 SING N N 23
PRD_900084 C16 O23 SING N N 24
PRD_900084 C18 O25 SING N N 25
PRD_900084 C18 C19 SING N N 26
PRD_900084 C19 O24 SING N N 27
PRD_900084 C17 H171 SING N N 28
PRD_900084 C20 H201 SING N N 29
PRD_900084 C21 H212 SING N N 30
PRD_900084 C21 H211 SING N N 31
PRD_900084 C01 H012 SING N N 32
PRD_900084 C01 H013 SING N N 33
PRD_900084 C01 H011 SING N N 34
PRD_900084 N04 H041 SING N N 35
PRD_900084 C05 H051 SING N N 36
PRD_900084 C06 H061 SING N N 37
PRD_900084 C07 H071 SING N N 38
PRD_900084 C08 H081 SING N N 39
PRD_900084 C09 H091 SING N N 40
PRD_900084 C09 H092 SING N N 41
PRD_900084 O10 H101 SING N N 42
PRD_900084 C12 H121 SING N N 43
PRD_900084 O13 H131 SING N N 44
PRD_900084 O14 H141 SING N N 45
PRD_900084 C16 H161 SING N N 46
PRD_900084 C18 H181 SING N N 47
PRD_900084 C19 H191 SING N N 48
PRD_900084 O22 H221 SING N N 49
PRD_900084 O24 H241 SING N N 50
PRD_900084 O25 H251 SING N N 51
PRD_900084 O26 H261 SING N N 52
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PRD_900084 InChI InChI 1.06 "InChI=1S/C14H25NO11/c1-4(18)15-7-12(9(20)6(3-17)24-13(7)23)26-14-11(22)10(21)8(19)5(2-16)25-14/h5-14,16-17,19-23H,2-3H2,1H3,(H,15,18)/t5-,6-,7-,8+,9+,10+,11-,12-,13+,14+/m1/s1"
PRD_900084 InChIKey InChI 1.06 HMQPEDMEOBLSQB-IQKNWYLPSA-N
PRD_900084 SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@H]1[C@@H](O)O[C@H](CO)[C@H](O)[C@@H]1O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O"
PRD_900084 SMILES CACTVS 3.385 "CC(=O)N[CH]1[CH](O)O[CH](CO)[CH](O)[CH]1O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O"
PRD_900084 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H]1[C@H]([C@H]([C@H](O[C@@H]1O)CO)O)O[C@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)O)O"
PRD_900084 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1C(C(C(OC1O)CO)O)OC2C(C(C(C(O2)CO)O)O)O"
#
_pdbx_chem_comp_identifier.comp_id PRD_900084
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
;~{N}-[(2~{S},3~{R},4~{R},5~{R},6~{R})-6-(hydroxymethyl)-4-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris
(oxidanyl)oxan-2-yl]oxy-2,5-bis(oxidanyl)oxan-3-yl]ethanamide
;
#