data_PRDCC_900096 # _chem_comp.id PRD_900096 _chem_comp.name "4-S-(6-O-phosphono-alpha-L-idopyranosyl)-4-thio-beta-D-glucopyranose" _chem_comp.type saccharide _chem_comp.formula "C12 H23 O13 P S" _chem_comp.pdbx_release_status REF_ONLY _chem_comp.formula_weight 438.342 _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_900096 CAQ C10 C 0 1 N N R 22.306 -5.585 16.101 3.073 0.375 -0.237 SGC 1 C1 polymer 1 1 1 ? ? ? PRD_900096 OAB O11 O 0 1 N N N 22.269 -6.526 15.144 4.461 0.087 -0.420 SGC 1 O1 polymer 1 1 2 ? ? ? PRD_900096 CAT C9 C 0 1 N N R 23.044 -6.133 17.293 2.830 0.817 1.208 SGC 1 C2 polymer 1 1 3 ? ? ? PRD_900096 OAC O10 O 0 1 N N N 22.288 -7.250 17.851 3.164 -0.251 2.097 SGC 1 O2 polymer 1 1 4 ? ? ? PRD_900096 CAX C8 C 0 1 N N R 23.268 -5.158 18.277 1.352 1.182 1.380 SGC 1 C3 polymer 1 1 5 ? ? ? PRD_900096 OAG O9 O 0 1 N N N 24.121 -5.713 19.313 1.130 1.666 2.707 SGC 1 O3 polymer 1 1 6 ? ? ? PRD_900096 CAZ C7 C 0 1 N N S 23.904 -3.924 17.756 0.986 2.274 0.370 SGC 1 C4 polymer 1 1 7 ? ? ? PRD_900096 CAR C11 C 0 1 N N R 23.214 -3.381 16.527 1.301 1.776 -1.043 SGC 1 C5 polymer 1 1 8 ? ? ? PRD_900096 OAN O12 O 0 1 N N N 22.932 -4.363 15.567 2.684 1.424 -1.126 SGC 1 O5 polymer 1 1 9 ? ? ? PRD_900096 CAK C12 C 0 1 N N N 24.088 -2.321 15.870 0.995 2.883 -2.054 SGC 1 C6 polymer 1 1 10 ? ? ? PRD_900096 OAA O13 O 0 1 N N N 23.478 -1.229 15.270 1.177 2.381 -3.380 SGC 1 O6 polymer 1 1 11 ? ? ? PRD_900096 SAP S1 S 0 1 N N N 23.950 -2.686 19.105 -0.783 2.651 0.499 SGC 1 S4 polymer 1 1 12 ? ? ? PRD_900096 OAH O1 O 0 1 N N N 28.811 -1.698 15.176 1.035 -2.584 1.506 RTG 2 OAH polymer 1 1 13 ? ? ? PRD_900096 PBA P1 P 0 1 N N N 28.684 -0.192 15.129 1.079 -2.858 0.052 RTG 2 PBA polymer 1 1 14 ? ? ? PRD_900096 OAI O2 O 0 1 N N N 28.786 0.265 13.687 2.578 -2.632 -0.490 RTG 2 OAI polymer 1 1 15 ? ? ? PRD_900096 OAJ O3 O 0 1 N N N 29.791 0.414 15.958 0.633 -4.380 -0.221 RTG 2 OAJ polymer 1 1 16 ? ? ? PRD_900096 O6 O4 O 0 1 N N N 27.290 0.271 15.707 0.075 -1.859 -0.713 RTG 2 O6 polymer 1 1 17 ? ? ? PRD_900096 C6 C1 C 0 1 N N N 27.073 0.199 17.063 -1.310 -1.743 -0.382 RTG 2 C6 polymer 1 1 18 ? ? ? PRD_900096 C5 C2 C 0 1 N N S 27.323 -1.153 17.689 -1.969 -0.710 -1.299 RTG 2 C5 polymer 1 1 19 ? ? ? PRD_900096 O5 O5 O 0 1 N N N 26.120 -1.855 17.817 -1.410 0.580 -1.043 RTG 2 O5 polymer 1 1 20 ? ? ? PRD_900096 C4 C3 C 0 1 N N S 28.172 -1.006 18.959 -3.475 -0.675 -1.028 RTG 2 C4 polymer 1 1 21 ? ? ? PRD_900096 O4 O6 O 0 1 N N N 28.938 0.194 18.841 -4.027 -1.978 -1.228 RTG 2 O4 polymer 1 1 22 ? ? ? PRD_900096 C3 C4 C 0 1 N N S 27.490 -1.042 20.200 -3.716 -0.233 0.418 RTG 2 C3 polymer 1 1 23 ? ? ? PRD_900096 O3 O7 O 0 1 N N N 28.484 -1.487 21.235 -5.121 -0.126 0.658 RTG 2 O3 polymer 1 1 24 ? ? ? PRD_900096 C2 C5 C 0 1 N N R 26.356 -1.898 20.219 -3.053 1.130 0.641 RTG 2 C2 polymer 1 1 25 ? ? ? PRD_900096 O2 O8 O 0 1 N N N 25.592 -1.753 21.431 -3.209 1.519 2.007 RTG 2 O2 polymer 1 1 26 ? ? ? PRD_900096 C1 C6 C 0 1 N N S 25.438 -1.663 19.029 -1.563 1.025 0.306 RTG 2 C1 polymer 1 1 27 ? ? ? PRD_900096 H18 H18 H 0 1 N N N 21.285 -5.335 16.424 2.485 -0.518 -0.448 SGC 1 H1 polymer 1 1 28 ? ? ? PRD_900096 H19 H19 H 0 1 N N N 21.805 -6.190 14.386 4.688 -0.200 -1.315 SGC 1 H1O polymer 1 1 29 ? ? ? PRD_900096 H16 H16 H 0 1 N N N 24.013 -6.515 16.940 3.448 1.686 1.434 SGC 1 H2 polymer 1 1 30 ? ? ? PRD_900096 H17 H17 H 0 1 N N N 22.143 -7.903 17.176 4.087 -0.535 2.041 SGC 1 H2O polymer 1 1 31 ? ? ? PRD_900096 H14 H14 H 0 1 N N N 22.306 -4.879 18.732 0.736 0.301 1.204 SGC 1 H3 polymer 1 1 32 ? ? ? PRD_900096 H15 H15 H 0 1 N N N 23.727 -6.506 19.658 1.342 1.025 3.399 SGC 1 H3O polymer 1 1 33 ? ? ? PRD_900096 H13 H13 H 0 1 N N N 24.956 -4.132 17.512 1.567 3.173 0.577 SGC 1 H4 polymer 1 1 34 ? ? ? PRD_900096 H20 H20 H 0 1 N N N 22.278 -2.899 16.846 0.690 0.901 -1.265 SGC 1 H5 polymer 1 1 35 ? ? ? PRD_900096 H22 H22 H 0 1 N N N 24.681 -2.827 15.094 1.668 3.723 -1.888 SGC 1 H62 polymer 1 1 36 ? ? ? PRD_900096 H21 H21 H 0 1 N N N 24.760 -1.929 16.648 -0.036 3.213 -1.930 SGC 1 H61 polymer 1 1 37 ? ? ? PRD_900096 H23 H23 H 0 1 N N N 24.142 -0.656 14.905 1.000 3.030 -4.074 SGC 1 H6 polymer 1 1 38 ? ? ? PRD_900096 H1 H1 H 0 1 N N N 28.907 -0.490 13.123 3.238 -3.202 -0.072 RTG 2 H6 polymer 1 1 39 ? ? ? PRD_900096 H2 H2 H 0 1 N N N 30.326 -0.279 16.328 0.639 -4.630 -1.155 RTG 2 H7 polymer 1 1 40 ? ? ? PRD_900096 H3 H3 H 0 1 N N N 27.737 0.927 17.552 -1.797 -2.709 -0.514 RTG 2 H61 polymer 1 1 41 ? ? ? PRD_900096 H4 H4 H 0 1 N N N 26.025 0.473 17.254 -1.410 -1.424 0.655 RTG 2 H62 polymer 1 1 42 ? ? ? PRD_900096 H5 H5 H 0 1 N N N 27.950 -1.706 16.974 -1.792 -0.983 -2.339 RTG 2 H5 polymer 1 1 43 ? ? ? PRD_900096 H6 H6 H 0 1 N N N 28.881 -1.847 18.949 -3.951 0.031 -1.710 RTG 2 H4 polymer 1 1 44 ? ? ? PRD_900096 H7 H7 H 0 1 N N N 29.473 0.306 19.618 -4.980 -2.029 -1.073 RTG 2 HO4 polymer 1 1 45 ? ? ? PRD_900096 H8 H8 H 0 1 N N N 27.169 -0.022 20.459 -3.283 -0.965 1.100 RTG 2 H3 polymer 1 1 46 ? ? ? PRD_900096 H9 H9 H 0 1 N N N 28.062 -1.524 22.085 -5.346 0.151 1.557 RTG 2 HO3 polymer 1 1 47 ? ? ? PRD_900096 H10 H10 H 0 1 N N N 26.706 -2.939 20.158 -3.520 1.873 -0.005 RTG 2 H2 polymer 1 1 48 ? ? ? PRD_900096 H11 H11 H 0 1 N N N 24.845 -2.339 21.407 -2.812 2.375 2.220 RTG 2 HO2 polymer 1 1 49 ? ? ? PRD_900096 H12 H12 H 0 1 N N N 25.073 -0.627 19.083 -1.088 0.312 0.980 RTG 2 H1 polymer 1 1 50 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_900096 OAH PBA DOUB N N 1 PRD_900096 PBA OAI SING N N 2 PRD_900096 PBA O6 SING N N 3 PRD_900096 PBA OAJ SING N N 4 PRD_900096 O6 C6 SING N N 5 PRD_900096 C6 C5 SING N N 6 PRD_900096 C5 O5 SING N N 7 PRD_900096 C5 C4 SING N N 8 PRD_900096 O5 C1 SING N N 9 PRD_900096 C4 O4 SING N N 10 PRD_900096 C4 C3 SING N N 11 PRD_900096 C3 C2 SING N N 12 PRD_900096 C3 O3 SING N N 13 PRD_900096 C2 C1 SING N N 14 PRD_900096 C2 O2 SING N N 15 PRD_900096 C1 SAP SING N N 16 PRD_900096 SAP CAZ SING N N 17 PRD_900096 CAZ CAR SING N N 18 PRD_900096 CAZ CAX SING N N 19 PRD_900096 CAX CAT SING N N 20 PRD_900096 CAX OAG SING N N 21 PRD_900096 CAT OAC SING N N 22 PRD_900096 CAT CAQ SING N N 23 PRD_900096 CAQ OAB SING N N 24 PRD_900096 CAQ OAN SING N N 25 PRD_900096 OAN CAR SING N N 26 PRD_900096 CAR CAK SING N N 27 PRD_900096 CAK OAA SING N N 28 PRD_900096 OAI H1 SING N N 29 PRD_900096 OAJ H2 SING N N 30 PRD_900096 C6 H3 SING N N 31 PRD_900096 C6 H4 SING N N 32 PRD_900096 C5 H5 SING N N 33 PRD_900096 C4 H6 SING N N 34 PRD_900096 O4 H7 SING N N 35 PRD_900096 C3 H8 SING N N 36 PRD_900096 O3 H9 SING N N 37 PRD_900096 C2 H10 SING N N 38 PRD_900096 O2 H11 SING N N 39 PRD_900096 C1 H12 SING N N 40 PRD_900096 CAZ H13 SING N N 41 PRD_900096 CAX H14 SING N N 42 PRD_900096 OAG H15 SING N N 43 PRD_900096 CAT H16 SING N N 44 PRD_900096 OAC H17 SING N N 45 PRD_900096 CAQ H18 SING N N 46 PRD_900096 OAB H19 SING N N 47 PRD_900096 CAR H20 SING N N 48 PRD_900096 CAK H21 SING N N 49 PRD_900096 CAK H22 SING N N 50 PRD_900096 OAA H23 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_900096 InChI InChI 1.06 "InChI=1S/C12H23O13PS/c13-1-3-10(7(16)8(17)11(19)24-3)27-12-9(18)6(15)5(14)4(25-12)2-23-26(20,21)22/h3-19H,1-2H2,(H2,20,21,22)/t3-,4+,5-,6+,7-,8-,9-,10-,11-,12+/m1/s1" PRD_900096 InChIKey InChI 1.06 XGJJBBUPFWZKFA-GABYZZBISA-N PRD_900096 SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1S[C@@H]2O[C@@H](CO[P](O)(O)=O)[C@@H](O)[C@H](O)[C@H]2O" PRD_900096 SMILES CACTVS 3.385 "OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1S[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH](O)[CH]2O" PRD_900096 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)S[C@H]2[C@@H]([C@H]([C@@H]([C@@H](O2)COP(=O)(O)O)O)O)O)O" PRD_900096 SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)O)O)O)SC2C(C(C(C(O2)COP(=O)(O)O)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id PRD_900096 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier ;[(2~{S},3~{S},4~{S},5~{R},6~{S})-6-[(2~{R},3~{S},4~{R},5~{R},6~{R})-2-(hydroxymethyl)-4,5,6-tris(oxidanyl)oxan-3-yl]sul fanyl-3,4,5-tris(oxidanyl)oxan-2-yl]methyl dihydrogen phosphate ; #