data_PRDCC_900097 # _chem_comp.id PRD_900097 _chem_comp.name ;1,4-DIMERCAPTO-ALPHA-D-GLUCOPYRANOSYL-(1-4)-S-1,4-DIMERCAPTO-BETA-D-GLUCOPYRANOSYL-(1-4)-S-1,4-DIMERCAPTO-BETA-D-GLUCOP YRANOSE ; _chem_comp.type saccharide _chem_comp.formula "C18 H32 O12 S4" _chem_comp.pdbx_release_status REF_ONLY _chem_comp.formula_weight 568.699 _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_900097 C1C C1C C 0 1 N N S -4.024 69.635 135.503 -0.430 -0.190 6.770 C1 SSG 1 1 1 polymer 1 ? ? ? PRD_900097 S1C S1C S 0 1 N Y N -3.173 68.192 134.884 -1.176 0.504 8.270 S1 SSG 2 1 1 polymer 1 ? ? ? PRD_900097 C2C C2C C 0 1 N N R -4.182 70.705 134.526 -1.409 -0.049 5.602 C2 SSG 3 1 1 polymer 1 ? ? ? PRD_900097 O2C O2C O 0 1 N N N -2.961 71.080 133.934 -2.627 -0.728 5.913 O2 SSG 4 1 1 polymer 1 ? ? ? PRD_900097 C3C C3C C 0 1 N N R -4.785 71.922 135.287 -0.783 -0.668 4.348 C3 SSG 5 1 1 polymer 1 ? ? ? PRD_900097 O3C O3C O 0 1 N N N -4.962 72.934 134.353 -1.617 -0.412 3.216 O3 SSG 6 1 1 polymer 1 ? ? ? PRD_900097 C4C C4C C 0 1 N N S -6.004 71.405 136.024 0.594 -0.035 4.124 C4 SSG 7 1 1 polymer 1 ? ? ? PRD_900097 C5C C5C C 0 1 N N R -5.659 70.305 136.999 1.423 -0.175 5.403 C5 SSG 8 1 1 polymer 1 ? ? ? PRD_900097 O5C O5C O 0 1 N N N -5.225 69.206 136.152 0.777 0.508 6.475 O5 SSG 9 1 1 polymer 1 ? ? ? PRD_900097 C6C C6C C 0 1 N N N -6.746 69.825 137.906 2.812 0.426 5.179 C6 SSG 10 1 1 polymer 1 ? ? ? PRD_900097 O6C O6C O 0 1 N N N -7.970 69.545 137.380 3.589 0.287 6.371 O6 SSG 11 1 1 polymer 1 ? ? ? PRD_900097 S4C S4C S 0 1 N N N -6.832 72.861 136.808 1.437 -0.881 2.759 S4 SSG 12 1 1 polymer 1 ? ? ? PRD_900097 C1B C1B C 0 1 N N S -7.349 73.683 135.215 0.659 -0.051 1.346 C1 SGC 13 2 1 polymer 1 ? ? ? PRD_900097 C2B C2B C 0 1 N N R -8.586 72.827 134.917 1.552 -0.204 0.112 C2 SGC 14 2 1 polymer 1 ? ? ? PRD_900097 O2B O2B O 0 1 N N N -8.898 72.757 133.500 2.837 0.361 0.376 O2 SGC 15 2 1 polymer 1 ? ? ? PRD_900097 C3B C3B C 0 1 N N R -9.805 73.474 135.597 0.902 0.527 -1.067 C3 SGC 16 2 1 polymer 1 ? ? ? PRD_900097 O3B O3B O 0 1 N N N -10.716 72.494 135.968 1.643 0.270 -2.262 O3 SGC 17 2 1 polymer 1 ? ? ? PRD_900097 C4B C4B C 0 1 N N S -9.308 74.293 136.797 -0.532 0.015 -1.232 C4 SGC 18 2 1 polymer 1 ? ? ? PRD_900097 C5B C5B C 0 1 N N R -8.632 75.500 136.213 -1.268 0.149 0.102 C5 SGC 19 2 1 polymer 1 ? ? ? PRD_900097 O5B O5B O 0 1 N N N -7.481 75.038 135.478 -0.615 -0.639 1.095 O5 SGC 20 2 1 polymer 1 ? ? ? PRD_900097 C6B C6B C 0 1 N N N -8.159 76.490 137.206 -2.711 -0.331 -0.060 C6 SGC 21 2 1 polymer 1 ? ? ? PRD_900097 O6B O6B O 0 1 N N N -7.627 75.920 138.333 -3.437 -0.077 1.144 O6 SGC 22 2 1 polymer 1 ? ? ? PRD_900097 S4B S4B S 0 1 N N N -10.865 75.013 137.443 -1.385 0.996 -2.497 S4 SGC 23 2 1 polymer 1 ? ? ? PRD_900097 C1A C1A C 0 1 N N S -10.705 75.004 139.257 -0.765 0.185 -3.996 C1 SGC 24 3 1 polymer 1 ? ? ? PRD_900097 C2A C2A C 0 1 N N R -11.443 76.277 139.668 -1.704 0.492 -5.165 C2 SGC 25 3 1 polymer 1 ? ? ? PRD_900097 O2A O2A O 0 1 N N N -10.689 77.421 139.301 -3.021 0.031 -4.854 O2 SGC 26 3 1 polymer 1 ? ? ? PRD_900097 C3A C3A C 0 1 N N R -11.724 76.266 141.164 -1.191 -0.223 -6.420 C3 SGC 27 3 1 polymer 1 ? ? ? PRD_900097 O3A O3A O 0 1 N N N -12.393 77.434 141.463 -1.971 0.171 -7.550 O3 SGC 28 3 1 polymer 1 ? ? ? PRD_900097 C4A C4A C 0 1 N N S -12.418 74.970 141.532 0.274 0.166 -6.640 C4 SGC 29 3 1 polymer 1 ? ? ? PRD_900097 C5A C5A C 0 1 N N R -11.606 73.775 141.126 1.064 -0.116 -5.361 C5 SGC 30 3 1 polymer 1 ? ? ? PRD_900097 O5A O5A O 0 1 N N N -11.379 73.836 139.721 0.544 0.668 -4.289 O5 SGC 31 3 1 polymer 1 ? ? ? PRD_900097 C6A C6A C 0 1 N N N -12.277 72.441 141.417 2.536 0.236 -5.583 C6 SGC 32 3 1 polymer 1 ? ? ? PRD_900097 O6A O6A O 0 1 N N N -13.650 72.482 141.027 3.302 -0.182 -4.452 O6 SGC 33 3 1 polymer 1 ? ? ? PRD_900097 S4A S4A S 0 1 N N N -12.883 74.772 143.311 0.962 -0.807 -8.007 S4 SGC 34 3 1 polymer 1 ? ? ? PRD_900097 H1C H1C H 0 1 N N N -3.386 70.140 136.265 -0.208 -1.245 6.931 H1 SSG 35 1 1 polymer 1 ? ? ? PRD_900097 HS1C CHS1 H 0 0 N N N -3.070 67.494 135.520 -0.181 0.285 9.149 H1S SSG 36 1 1 polymer 1 ? ? ? PRD_900097 H2C H2C H 0 1 N N N -4.841 70.353 133.698 -1.615 1.006 5.425 H2 SSG 37 1 1 polymer 1 ? ? ? PRD_900097 HO2C CHO2 H 0 0 N N N -3.064 71.777 133.297 -2.987 -0.308 6.707 H2O SSG 38 1 1 polymer 1 ? ? ? PRD_900097 H3C H3C H 0 1 N N N -4.147 72.383 136.077 -0.673 -1.743 4.486 H3 SSG 39 1 1 polymer 1 ? ? ? PRD_900097 HO3C CHO3 H 0 0 N N N -5.330 73.676 134.817 -2.495 -0.753 3.434 H3O SSG 40 1 1 polymer 1 ? ? ? PRD_900097 H4C H4C H 0 1 N N N -6.714 70.919 135.315 0.476 1.020 3.881 H4 SSG 41 1 1 polymer 1 ? ? ? PRD_900097 H5C H5C H 0 1 N N N -4.903 70.705 137.714 1.522 -1.231 5.654 H5 SSG 42 1 1 polymer 1 ? ? ? PRD_900097 H6C2 2H6C H 0 0 N N N -6.871 70.559 138.735 2.715 1.482 4.930 H62 SSG 43 1 1 polymer 1 ? ? ? PRD_900097 H6C1 1H6C H 0 0 N N N -6.380 68.929 138.461 3.307 -0.095 4.360 H61 SSG 44 1 1 polymer 1 ? ? ? PRD_900097 HO6C CHO6 H 0 0 N N N -8.660 69.240 137.956 4.454 0.677 6.187 H6 SSG 45 1 1 polymer 1 ? ? ? PRD_900097 H1B H1B H 0 1 N N N -6.688 73.705 134.317 0.532 1.007 1.572 H1 SGC 46 2 1 polymer 1 ? ? ? PRD_900097 H2B H2B H 0 1 N N N -8.364 71.800 135.291 1.662 -1.261 -0.129 H2 SGC 47 2 1 polymer 1 ? ? ? PRD_900097 HO2B BHO2 H 0 0 N N N -9.664 72.226 133.315 3.209 -0.126 1.123 H2O SGC 48 2 1 polymer 1 ? ? ? PRD_900097 H3B H3B H 0 1 N N N -10.336 74.159 134.896 0.887 1.599 -0.869 H3 SGC 49 2 1 polymer 1 ? ? ? PRD_900097 HO3B BHO3 H 0 0 N N N -11.468 72.893 136.387 2.518 0.665 -2.138 H3O SGC 50 2 1 polymer 1 ? ? ? PRD_900097 H4B H4B H 0 1 N N N -8.677 73.714 137.511 -0.513 -1.032 -1.534 H4 SGC 51 2 1 polymer 1 ? ? ? PRD_900097 H5B H5B H 0 1 N N N -9.393 76.019 135.585 -1.267 1.194 0.411 H5 SGC 52 2 1 polymer 1 ? ? ? PRD_900097 H6B2 2H6B H 0 0 N N N -8.973 77.204 137.471 -2.717 -1.401 -0.269 H62 SGC 53 2 1 polymer 1 ? ? ? PRD_900097 H6B1 1H6B H 0 0 N N N -7.434 77.199 136.742 -3.181 0.202 -0.886 H61 SGC 54 2 1 polymer 1 ? ? ? PRD_900097 HO6B BHO6 H 0 0 N N N -7.323 76.555 138.970 -4.339 -0.394 0.999 H6 SGC 55 2 1 polymer 1 ? ? ? PRD_900097 H1A H1A H 0 1 N N N -9.664 74.984 139.657 -0.726 -0.892 -3.836 H1 SGC 56 3 1 polymer 1 ? ? ? PRD_900097 H2A H2A H 0 1 N N N -12.420 76.317 139.132 -1.727 1.567 -5.342 H2 SGC 57 3 1 polymer 1 ? ? ? PRD_900097 HO2A AHO2 H 0 0 N N N -11.147 78.212 139.556 -3.301 0.501 -4.057 H2O SGC 58 3 1 polymer 1 ? ? ? PRD_900097 H3A H3A H 0 1 N N N -10.806 76.267 141.797 -1.267 -1.302 -6.282 H3 SGC 59 3 1 polymer 1 ? ? ? PRD_900097 HO3A AHO3 H 0 0 N N N -12.568 77.427 142.396 -2.885 -0.082 -7.361 H3O SGC 60 3 1 polymer 1 ? ? ? PRD_900097 H4A H4A H 0 1 N N N -13.372 75.031 140.959 0.336 1.228 -6.881 H4 SGC 61 3 1 polymer 1 ? ? ? PRD_900097 H5A H5A H 0 1 N N N -10.666 73.818 141.724 0.979 -1.174 -5.109 H5 SGC 62 3 1 polymer 1 ? ? ? PRD_900097 H6A2 2H6A H 0 0 N N N -12.156 72.138 142.483 2.900 -0.269 -6.476 H62 SGC 63 3 1 polymer 1 ? ? ? PRD_900097 H6A1 1H6A H 0 0 N N N -11.734 71.590 140.942 2.635 1.314 -5.710 H61 SGC 64 3 1 polymer 1 ? ? ? PRD_900097 HO6A AHO6 H 0 0 N N N -14.069 71.649 141.208 4.221 0.058 -4.632 H6 SGC 65 3 1 polymer 1 ? ? ? PRD_900097 HS4A AHS4 H 0 0 N N N -13.318 73.959 143.541 0.140 -0.427 -9.002 H4S SGC 66 3 1 polymer 1 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_900097 C1A C2A SING N N 1 PRD_900097 C1A O5A SING N N 2 PRD_900097 C1A S4B SING N N 3 PRD_900097 C1A H1A SING N N 4 PRD_900097 C2A C3A SING N N 5 PRD_900097 C2A O2A SING N N 6 PRD_900097 C2A H2A SING N N 7 PRD_900097 C3A C4A SING N N 8 PRD_900097 C3A O3A SING N N 9 PRD_900097 C3A H3A SING N N 10 PRD_900097 C4A C5A SING N N 11 PRD_900097 C4A S4A SING N N 12 PRD_900097 C4A H4A SING N N 13 PRD_900097 C5A C6A SING N N 14 PRD_900097 C5A O5A SING N N 15 PRD_900097 C5A H5A SING N N 16 PRD_900097 C6A O6A SING N N 17 PRD_900097 C6A H6A1 SING N N 18 PRD_900097 C6A H6A2 SING N N 19 PRD_900097 O2A HO2A SING N N 20 PRD_900097 O3A HO3A SING N N 21 PRD_900097 S4A HS4A SING N N 22 PRD_900097 O6A HO6A SING N N 23 PRD_900097 C1B C2B SING N N 24 PRD_900097 C1B O5B SING N N 25 PRD_900097 C1B S4C SING N N 26 PRD_900097 C1B H1B SING N N 27 PRD_900097 C2B C3B SING N N 28 PRD_900097 C2B O2B SING N N 29 PRD_900097 C2B H2B SING N N 30 PRD_900097 C3B C4B SING N N 31 PRD_900097 C3B O3B SING N N 32 PRD_900097 C3B H3B SING N N 33 PRD_900097 C4B C5B SING N N 34 PRD_900097 C4B S4B SING N N 35 PRD_900097 C4B H4B SING N N 36 PRD_900097 C5B C6B SING N N 37 PRD_900097 C5B O5B SING N N 38 PRD_900097 C5B H5B SING N N 39 PRD_900097 C6B O6B SING N N 40 PRD_900097 C6B H6B1 SING N N 41 PRD_900097 C6B H6B2 SING N N 42 PRD_900097 O2B HO2B SING N N 43 PRD_900097 O3B HO3B SING N N 44 PRD_900097 O6B HO6B SING N N 45 PRD_900097 C1C C2C SING N N 46 PRD_900097 C1C S1C SING N N 47 PRD_900097 C1C O5C SING N N 48 PRD_900097 C1C H1C SING N N 49 PRD_900097 C2C C3C SING N N 50 PRD_900097 C2C O2C SING N N 51 PRD_900097 C2C H2C SING N N 52 PRD_900097 C3C C4C SING N N 53 PRD_900097 C3C O3C SING N N 54 PRD_900097 C3C H3C SING N N 55 PRD_900097 C4C C5C SING N N 56 PRD_900097 C4C S4C SING N N 57 PRD_900097 C4C H4C SING N N 58 PRD_900097 C5C C6C SING N N 59 PRD_900097 C5C O5C SING N N 60 PRD_900097 C5C H5C SING N N 61 PRD_900097 C6C O6C SING N N 62 PRD_900097 C6C H6C1 SING N N 63 PRD_900097 C6C H6C2 SING N N 64 PRD_900097 S1C HS1C SING N N 65 PRD_900097 O2C HO2C SING N N 66 PRD_900097 O3C HO3C SING N N 67 PRD_900097 O6C HO6C SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_900097 SMILES ACDLabs 10.04 "S(C1C(OC(S)C(O)C1O)CO)C3OC(C(SC2OC(CO)C(S)C(O)C2O)C(O)C3O)CO" PRD_900097 SMILES_CANONICAL CACTVS 3.341 ;OC[C@H]1O[C@@H](S[C@H]2[C@H](O)[C@@H](O)[C@@H](O[C@@H]2CO)S[C@H]3[C@H](O)[C@@H](O)[C@H](S)O[C@@H]3CO)[C@H](O)[C@@H](O)[ C@@H]1S ; PRD_900097 SMILES CACTVS 3.341 "OC[CH]1O[CH](S[CH]2[CH](O)[CH](O)[CH](O[CH]2CO)S[CH]3[CH](O)[CH](O)[CH](S)O[CH]3CO)[CH](O)[CH](O)[CH]1S" PRD_900097 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 ;C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)S[C@@H]2[C@H](O[C@H]([C@@H]([C@H]2O)O)S[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)O)S)CO) CO)O)O)S)O ; PRD_900097 SMILES "OpenEye OEToolkits" 1.5.0 "C(C1C(C(C(C(O1)SC2C(OC(C(C2O)O)SC3C(OC(C(C3O)O)S)CO)CO)O)O)S)O" PRD_900097 InChI InChI 1.03 ;InChI=1S/C18H32O12S4/c19-1-4-13(31)7(22)11(26)17(29-4)34-15-6(3-21)30-18(12(27)9(15)24)33-14-5(2-20)28-16(32)10(25)8(14 )23/h4-27,31-32H,1-3H2/t4-,5-,6-,7-,8-,9-,10-,11-,12-,13-,14-,15-,16+,17+,18+/m1/s1 ; PRD_900097 InChIKey InChI 1.03 WBVXJPVNEKGLBK-FBMSAYSMSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_900097 "SYSTEMATIC NAME" ACDLabs 10.04 "4-thio-beta-D-glucopyranosyl-(1->4)-4-thio-beta-D-glucopyranosyl-(1->4)-1,4-dithio-beta-D-glucopyranose" PRD_900097 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 ;(2S,3R,4R,5S,6R)-2-[(2R,3S,4R,5R,6S)-6-[(2R,3S,4R,5R,6S)-4,5-dihydroxy-2-(hydroxymethyl)-6-sulfanyl-oxan-3-yl]sulfanyl- 4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]sulfanyl-6-(hydroxymethyl)-5-sulfanyl-oxane-3,4-diol ; #