data_PRDCC_900098 # _chem_comp.id PRD_900098 _chem_comp.name "methyl 6-S-beta-D-glucopyranosyl-6-thio-beta-D-glucopyranoside" _chem_comp.type saccharide _chem_comp.formula "C13 H24 O10 S" _chem_comp.pdbx_release_status REF_ONLY _chem_comp.formula_weight 372.389 _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_900098 S1 S1 S 0 1 N N N 26.293 28.119 36.605 0.410 0.784 0.481 S6 U1Y 1 1 1 polymer 1 ? ? ? PRD_900098 C11 C7 C 0 1 N N R 25.909 31.477 33.601 -3.947 1.078 0.191 C1 U1Y 2 1 1 polymer 1 ? ? ? PRD_900098 O1 O6 O 0 1 N N N 24.688 31.256 32.968 -4.392 2.331 -0.331 O1 U1Y 3 1 1 polymer 1 ? ? ? PRD_900098 C7 C8 C 0 1 N N N 24.477 32.433 32.162 -3.678 3.460 0.177 C7 U1Y 4 1 1 polymer 1 ? ? ? PRD_900098 O51 O7 O 0 1 N N N 25.601 30.553 34.598 -2.605 0.833 -0.237 O5 U1Y 5 1 1 polymer 1 ? ? ? PRD_900098 C51 C9 C 0 1 N N S 26.501 30.393 35.636 -2.050 -0.389 0.253 C5 U1Y 6 1 1 polymer 1 ? ? ? PRD_900098 C41 C10 C 0 1 N N S 27.134 31.719 36.102 -2.884 -1.567 -0.257 C4 U1Y 7 1 1 polymer 1 ? ? ? PRD_900098 O41 O8 O 0 1 N N N 28.497 31.613 36.604 -2.366 -2.786 0.278 O4 U1Y 8 1 1 polymer 1 ? ? ? PRD_900098 C31 C11 C 0 1 N N S 27.407 32.690 35.015 -4.337 -1.387 0.193 C3 U1Y 9 1 1 polymer 1 ? ? ? PRD_900098 O31 O9 O 0 1 N N N 27.868 33.847 35.688 -5.137 -2.444 -0.341 O3 U1Y 10 1 1 polymer 1 ? ? ? PRD_900098 C21 C12 C 0 1 N N R 26.160 32.848 34.231 -4.857 -0.041 -0.322 C2 U1Y 11 1 1 polymer 1 ? ? ? PRD_900098 O21 O10 O 0 1 N N N 26.441 33.849 33.292 -6.188 0.170 0.153 O2 U1Y 12 1 1 polymer 1 ? ? ? PRD_900098 C61 C13 C 0 1 N N N 25.517 29.684 36.579 -0.610 -0.530 -0.242 C6 U1Y 13 1 1 polymer 1 ? ? ? PRD_900098 C2 C3 C 0 1 N N R 24.934 25.730 36.967 3.019 1.564 0.209 C2 BGC 14 2 1 polymer 1 ? ? ? PRD_900098 C3 C6 C 0 1 N N S 24.262 24.574 36.187 4.417 1.247 -0.330 C3 BGC 15 2 1 polymer 1 ? ? ? PRD_900098 C4 C4 C 0 1 N N S 23.739 25.033 34.808 4.852 -0.127 0.186 C4 BGC 16 2 1 polymer 1 ? ? ? PRD_900098 C5 C1 C 0 1 N N R 24.929 25.597 34.031 3.816 -1.173 -0.235 C5 BGC 17 2 1 polymer 1 ? ? ? PRD_900098 C6 C2 C 0 1 N N N 24.644 26.006 32.591 4.212 -2.539 0.328 C6 BGC 18 2 1 polymer 1 ? ? ? PRD_900098 C1 C5 C 0 1 N N S 25.889 26.486 36.012 2.053 0.454 -0.213 C1 BGC 19 2 1 polymer 1 ? ? ? PRD_900098 O2 O5 O 0 1 N N N 25.665 25.304 38.160 2.573 2.813 -0.325 O2 BGC 20 2 1 polymer 1 ? ? ? PRD_900098 O3 O4 O 0 1 N N N 23.223 23.951 36.962 5.340 2.241 0.121 O3 BGC 21 2 1 polymer 1 ? ? ? PRD_900098 O4 O3 O 0 1 N N N 23.120 23.984 34.041 6.124 -0.466 -0.369 O4 BGC 22 2 1 polymer 1 ? ? ? PRD_900098 O5 O2 O 0 1 N N N 25.347 26.766 34.716 2.532 -0.802 0.273 O5 BGC 23 2 1 polymer 1 ? ? ? PRD_900098 O6 O1 O 0 1 N N N 23.770 27.132 32.595 3.310 -3.535 -0.159 O6 BGC 24 2 1 polymer 1 ? ? ? PRD_900098 H12 H12 H 0 1 N N N 26.768 31.170 32.987 -3.982 1.104 1.280 H1 U1Y 25 1 1 polymer 1 ? ? ? PRD_900098 H13 H13 H 0 1 N N N 23.524 32.342 31.621 -4.076 4.372 -0.267 H71 U1Y 26 1 1 polymer 1 ? ? ? PRD_900098 H14 H14 H 0 1 N N N 24.447 33.321 32.811 -3.792 3.504 1.260 H72 U1Y 27 1 1 polymer 1 ? ? ? PRD_900098 H15 H15 H 0 1 N N N 25.300 32.535 31.439 -2.622 3.364 -0.073 H73 U1Y 28 1 1 polymer 1 ? ? ? PRD_900098 H16 H16 H 0 1 N N N 27.303 29.692 35.362 -2.061 -0.382 1.343 H5 U1Y 29 1 1 polymer 1 ? ? ? PRD_900098 H17 H17 H 0 1 N N N 26.484 32.180 36.860 -2.840 -1.600 -1.346 H4 U1Y 30 1 1 polymer 1 ? ? ? PRD_900098 H18 H18 H 0 1 N N N 28.519 31.007 37.335 -2.847 -3.576 -0.004 HO4 U1Y 31 1 1 polymer 1 ? ? ? PRD_900098 H19 H19 H 0 1 N N N 28.197 32.290 34.362 -4.387 -1.407 1.281 H3 U1Y 32 1 1 polymer 1 ? ? ? PRD_900098 H20 H20 H 0 1 N N N 28.668 33.643 36.158 -6.071 -2.393 -0.096 HO3 U1Y 33 1 1 polymer 1 ? ? ? PRD_900098 H21 H21 H 0 1 N N N 25.320 33.122 34.886 -4.853 -0.043 -1.412 H2 U1Y 34 1 1 polymer 1 ? ? ? PRD_900098 H22 H22 H 0 1 N N N 26.587 34.673 33.741 -6.578 1.007 -0.132 HO2 U1Y 35 1 1 polymer 1 ? ? ? PRD_900098 H23 H23 H 0 1 N N N 25.485 30.150 37.575 -0.590 -0.449 -1.329 H61 U1Y 36 1 1 polymer 1 ? ? ? PRD_900098 H24 H24 H 0 1 N N N 24.500 29.638 36.162 -0.216 -1.502 0.057 H62 U1Y 37 1 1 polymer 1 ? ? ? PRD_900098 H5 H5 H 0 1 N N N 24.143 26.431 37.270 3.052 1.625 1.297 H2 BGC 38 2 1 polymer 1 ? ? ? PRD_900098 H9 H9 H 0 1 N N N 25.043 23.823 35.997 4.395 1.238 -1.420 H3 BGC 39 2 1 polymer 1 ? ? ? PRD_900098 H6 H6 H 0 1 N N N 23.015 25.846 34.970 4.922 -0.102 1.273 H4 BGC 40 2 1 polymer 1 ? ? ? PRD_900098 H1 H1 H 0 1 N N N 25.735 24.849 34.032 3.774 -1.226 -1.323 H5 BGC 41 2 1 polymer 1 ? ? ? PRD_900098 H2 H2 H 0 1 N N N 24.167 25.171 32.057 5.226 -2.782 0.012 H6C1 BGC 42 2 1 polymer 1 ? ? ? PRD_900098 H3 H3 H 0 1 N N N 25.586 26.272 32.089 4.167 -2.510 1.417 H6C2 BGC 43 2 1 polymer 1 ? ? ? PRD_900098 H7 H7 H 0 1 N N N 26.837 25.934 35.932 1.989 0.422 -1.301 H1 BGC 44 2 1 polymer 1 ? ? ? PRD_900098 H11 H11 H 0 1 N N N 25.076 24.840 38.744 1.691 3.075 -0.027 HB BGC 45 2 1 polymer 1 ? ? ? PRD_900098 H10 H10 H 0 1 N N N 23.573 23.680 37.802 5.125 3.138 -0.170 HC BGC 46 2 1 polymer 1 ? ? ? PRD_900098 H8 H8 H 0 1 N N N 22.380 23.633 34.523 6.830 0.156 -0.142 HD BGC 47 2 1 polymer 1 ? ? ? PRD_900098 H4 H4 H 0 1 N N N 23.587 27.394 31.701 3.501 -4.428 0.158 H6 BGC 48 2 1 polymer 1 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_900098 C7 O1 SING N N 1 PRD_900098 C6 O6 SING N N 2 PRD_900098 C6 C5 SING N N 3 PRD_900098 O1 C11 SING N N 4 PRD_900098 O21 C21 SING N N 5 PRD_900098 C11 C21 SING N N 6 PRD_900098 C11 O51 SING N N 7 PRD_900098 C5 O5 SING N N 8 PRD_900098 C5 C4 SING N N 9 PRD_900098 O4 C4 SING N N 10 PRD_900098 C21 C31 SING N N 11 PRD_900098 O51 C51 SING N N 12 PRD_900098 O5 C1 SING N N 13 PRD_900098 C4 C3 SING N N 14 PRD_900098 C31 O31 SING N N 15 PRD_900098 C31 C41 SING N N 16 PRD_900098 C51 C41 SING N N 17 PRD_900098 C51 C61 SING N N 18 PRD_900098 C1 S1 SING N N 19 PRD_900098 C1 C2 SING N N 20 PRD_900098 C41 O41 SING N N 21 PRD_900098 C3 O3 SING N N 22 PRD_900098 C3 C2 SING N N 23 PRD_900098 C61 S1 SING N N 24 PRD_900098 C2 O2 SING N N 25 PRD_900098 C5 H1 SING N N 26 PRD_900098 C6 H2 SING N N 27 PRD_900098 C6 H3 SING N N 28 PRD_900098 O6 H4 SING N N 29 PRD_900098 C2 H5 SING N N 30 PRD_900098 C4 H6 SING N N 31 PRD_900098 C1 H7 SING N N 32 PRD_900098 O4 H8 SING N N 33 PRD_900098 C3 H9 SING N N 34 PRD_900098 O3 H10 SING N N 35 PRD_900098 O2 H11 SING N N 36 PRD_900098 C11 H12 SING N N 37 PRD_900098 C7 H13 SING N N 38 PRD_900098 C7 H14 SING N N 39 PRD_900098 C7 H15 SING N N 40 PRD_900098 C51 H16 SING N N 41 PRD_900098 C41 H17 SING N N 42 PRD_900098 O41 H18 SING N N 43 PRD_900098 C31 H19 SING N N 44 PRD_900098 O31 H20 SING N N 45 PRD_900098 C21 H21 SING N N 46 PRD_900098 O21 H22 SING N N 47 PRD_900098 C61 H23 SING N N 48 PRD_900098 C61 H24 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_900098 SMILES ACDLabs 12.01 "C1(OC(C(O)C(C1O)O)SCC2OC(C(C(C2O)O)O)OC)CO" PRD_900098 InChI InChI 1.03 ;InChI=1S/C13H24O10S/c1-21-12-10(19)8(17)7(16)5(22-12)3-24-13-11(20)9(18)6(15)4(2-14)23-13/h4-20H,2-3H2,1H3/t4-,5-,6-,7- ,8+,9+,10-,11-,12-,13+/m1/s1 ; PRD_900098 InChIKey InChI 1.03 WUUCBSYQRSZRQS-VHGSIDFWSA-N PRD_900098 SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]1O[C@H](CS[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@@H](O)[C@H](O)[C@H]1O" PRD_900098 SMILES CACTVS 3.385 "CO[CH]1O[CH](CS[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH](O)[CH](O)[CH]1O" PRD_900098 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CS[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O)O)O" PRD_900098 SMILES "OpenEye OEToolkits" 2.0.6 "COC1C(C(C(C(O1)CSC2C(C(C(C(O2)CO)O)O)O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_900098 "SYSTEMATIC NAME" ACDLabs 12.01 "methyl 6-S-beta-D-glucopyranosyl-6-thio-beta-D-glucopyranoside" PRD_900098 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 ;(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[[(2~{S},3~{S},4~{S},5~{R},6~{R})-6-methoxy-3,4,5-tris(oxidanyl)oxa n-2-yl]methylsulfanyl]oxane-3,4,5-triol ; #