data_PRDCC_900099 # _chem_comp.id PRD_900099 _chem_comp.name "methyl 2-S-beta-D-glucopyranosyl-2-thio-beta-D-glucopyranoside" _chem_comp.type saccharide _chem_comp.formula "C13 H24 O10 S" _chem_comp.pdbx_release_status REF_ONLY _chem_comp.formula_weight 372.389 _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_pcm ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_900099 S22 S1 S 0 1 N N N 27.478 33.551 35.264 0.073 -1.256 -1.042 U2A 1 S2 polymer 1 1 1 ? ? ? PRD_900099 C22 C7 C 0 1 N N R 28.448 33.563 33.762 -1.371 -0.766 -0.060 U2A 1 C2 polymer 1 1 2 ? ? ? PRD_900099 C21 C8 C 0 1 N N R 28.416 34.918 32.975 -1.614 0.737 -0.223 U2A 1 C1 polymer 1 1 3 ? ? ? PRD_900099 O21 O6 O 0 1 N N N 27.141 35.309 32.432 -0.490 1.459 0.282 U2A 1 O1 polymer 1 1 4 ? ? ? PRD_900099 C27 C9 C 0 1 N N N 27.078 36.594 31.795 -0.540 2.865 0.030 U2A 1 C7 polymer 1 1 5 ? ? ? PRD_900099 O25 O7 O 0 1 N N N 29.435 34.932 31.927 -2.786 1.110 0.504 U2A 1 O5 polymer 1 1 6 ? ? ? PRD_900099 C23 C10 C 0 1 N N S 29.920 33.299 34.175 -2.605 -1.530 -0.549 U2A 1 C3 polymer 1 1 7 ? ? ? PRD_900099 O23 O8 O 0 1 N N N 30.098 32.084 34.943 -2.417 -2.930 -0.333 U2A 1 O3 polymer 1 1 8 ? ? ? PRD_900099 C24 C11 C 0 1 N N S 30.938 33.383 33.012 -3.832 -1.052 0.234 U2A 1 C4 polymer 1 1 9 ? ? ? PRD_900099 O24 O9 O 0 1 N N N 32.275 33.087 33.464 -5.001 -1.706 -0.264 U2A 1 O4 polymer 1 1 10 ? ? ? PRD_900099 C25 C12 C 0 1 N N R 30.835 34.767 32.326 -3.980 0.462 0.060 U2A 1 C5 polymer 1 1 11 ? ? ? PRD_900099 C26 C13 C 0 1 N N N 31.885 34.937 31.165 -5.168 0.957 0.887 U2A 1 C6 polymer 1 1 12 ? ? ? PRD_900099 O26 O10 O 0 1 N N N 31.437 35.876 30.174 -5.377 2.348 0.636 U2A 1 O6 polymer 1 1 13 ? ? ? PRD_900099 C12 C1 C 0 1 N N R 25.454 32.860 33.593 2.583 -1.649 -0.026 BGC 2 C2 polymer 1 1 14 ? ? ? PRD_900099 C13 C2 C 0 1 N N S 24.339 31.819 33.225 3.776 -1.070 0.741 BGC 2 C3 polymer 1 1 15 ? ? ? PRD_900099 C14 C3 C 0 1 N N S 24.716 30.318 33.439 4.222 0.231 0.065 BGC 2 C4 polymer 1 1 16 ? ? ? PRD_900099 C15 C4 C 0 1 N N R 25.385 30.168 34.839 3.038 1.201 0.014 BGC 2 C5 polymer 1 1 17 ? ? ? PRD_900099 C16 C5 C 0 1 N N N 25.811 28.750 35.116 3.458 2.480 -0.713 BGC 2 C6 polymer 1 1 18 ? ? ? PRD_900099 C11 C6 C 0 1 N N S 26.042 32.474 34.945 1.464 -0.606 -0.074 BGC 2 C1 polymer 1 1 19 ? ? ? PRD_900099 O12 O1 O 0 1 N N N 24.921 34.242 33.619 2.114 -2.824 0.637 BGC 2 O2 polymer 1 1 20 ? ? ? PRD_900099 O13 O2 O 0 1 N N N 24.053 32.113 31.840 4.854 -2.009 0.728 BGC 2 O3 polymer 1 1 21 ? ? ? PRD_900099 O14 O3 O 0 1 N N N 23.638 29.288 33.399 5.288 0.817 0.815 BGC 2 O4 polymer 1 1 22 ? ? ? PRD_900099 O15 O5 O 0 1 N N N 26.479 31.107 34.930 1.953 0.589 -0.686 BGC 2 O5 polymer 1 1 23 ? ? ? PRD_900099 O16 O4 O 0 1 N N N 26.305 28.683 36.505 2.388 3.425 -0.671 BGC 2 O6 polymer 1 1 24 ? ? ? PRD_900099 H12 H12 H 0 1 N N N 28.079 32.747 33.123 -1.193 -0.995 0.990 U2A 1 H2 polymer 1 1 25 ? ? ? PRD_900099 H13 H13 H 0 1 N N N 28.703 35.689 33.705 -1.752 0.971 -1.279 U2A 1 H1 polymer 1 1 26 ? ? ? PRD_900099 H14 H14 H 0 1 N N N 26.057 36.771 31.426 -0.643 3.039 -1.041 U2A 1 H14 polymer 1 1 27 ? ? ? PRD_900099 H15 H15 H 0 1 N N N 27.346 37.376 32.520 -1.394 3.297 0.552 U2A 1 H15 polymer 1 1 28 ? ? ? PRD_900099 H16 H16 H 0 1 N N N 27.783 36.620 30.951 0.378 3.332 0.387 U2A 1 H16 polymer 1 1 29 ? ? ? PRD_900099 H17 H17 H 0 1 N N N 30.183 34.129 34.848 -2.753 -1.342 -1.612 U2A 1 H3 polymer 1 1 30 ? ? ? PRD_900099 H18 H18 H 0 1 N N N 29.462 32.059 35.648 -3.161 -3.476 -0.620 U2A 1 HO3 polymer 1 1 31 ? ? ? PRD_900099 H19 H19 H 0 1 N N N 30.645 32.628 32.268 -3.704 -1.287 1.290 U2A 1 H4 polymer 1 1 32 ? ? ? PRD_900099 H20 H20 H 0 1 N N N 32.288 32.231 33.876 -5.817 -1.450 0.188 U2A 1 HO4 polymer 1 1 33 ? ? ? PRD_900099 H21 H21 H 0 1 N N N 31.070 35.527 33.086 -4.148 0.692 -0.992 U2A 1 H5 polymer 1 1 34 ? ? ? PRD_900099 H22 H22 H 0 1 N N N 32.045 33.961 30.684 -6.062 0.399 0.609 U2A 1 H61 polymer 1 1 35 ? ? ? PRD_900099 H23 H23 H 0 1 N N N 32.833 35.295 31.592 -4.960 0.807 1.947 U2A 1 H62 polymer 1 1 36 ? ? ? PRD_900099 H24 H24 H 0 1 N N N 32.093 35.953 29.491 -6.116 2.730 1.128 U2A 1 HO6 polymer 1 1 37 ? ? ? PRD_900099 H2 H2 H 0 1 N N N 26.247 32.793 32.833 2.890 -1.901 -1.041 BGC 2 H2 polymer 1 1 38 ? ? ? PRD_900099 H3 H3 H 0 1 N N N 23.453 32.039 33.839 3.483 -0.864 1.770 BGC 2 H3 polymer 1 1 39 ? ? ? PRD_900099 H5 H5 H 0 1 N N N 25.471 30.057 32.683 4.562 0.017 -0.948 BGC 2 H4 polymer 1 1 40 ? ? ? PRD_900099 H7 H7 H 0 1 N N N 24.628 30.442 35.589 2.724 1.445 1.029 BGC 2 H5 polymer 1 1 41 ? ? ? PRD_900099 H8 H8 H 0 1 N N N 24.954 28.072 34.992 4.336 2.903 -0.226 BGC 2 H6C1 polymer 1 1 42 ? ? ? PRD_900099 H9 H9 H 0 1 N N N 26.612 28.459 34.421 3.696 2.246 -1.751 BGC 2 H6C2 polymer 1 1 43 ? ? ? PRD_900099 H11 H11 H 0 1 N N N 25.315 32.662 35.749 1.129 -0.385 0.939 BGC 2 H1 polymer 1 1 44 ? ? ? PRD_900099 H1 H1 H 0 1 N N N 25.618 34.847 33.844 1.355 -3.241 0.207 BGC 2 HB polymer 1 1 45 ? ? ? PRD_900099 H4 H4 H 0 1 N N N 23.829 33.032 31.751 4.642 -2.857 1.140 BGC 2 HC polymer 1 1 46 ? ? ? PRD_900099 H6 H6 H 0 1 N N N 24.015 28.428 33.544 6.070 0.254 0.892 BGC 2 HD polymer 1 1 47 ? ? ? PRD_900099 H10 H10 H 0 1 N N N 26.580 27.795 36.701 2.555 4.231 -1.178 BGC 2 H6 polymer 1 1 48 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_900099 O26 C26 SING N N 1 PRD_900099 C26 C25 SING N N 2 PRD_900099 C27 O21 SING N N 3 PRD_900099 O13 C13 SING N N 4 PRD_900099 O25 C25 SING N N 5 PRD_900099 O25 C21 SING N N 6 PRD_900099 C25 C24 SING N N 7 PRD_900099 O21 C21 SING N N 8 PRD_900099 C21 C22 SING N N 9 PRD_900099 C24 O24 SING N N 10 PRD_900099 C24 C23 SING N N 11 PRD_900099 C13 C14 SING N N 12 PRD_900099 C13 C12 SING N N 13 PRD_900099 O14 C14 SING N N 14 PRD_900099 C14 C15 SING N N 15 PRD_900099 C12 O12 SING N N 16 PRD_900099 C12 C11 SING N N 17 PRD_900099 C22 C23 SING N N 18 PRD_900099 C22 S22 SING N N 19 PRD_900099 C23 O23 SING N N 20 PRD_900099 C15 O15 SING N N 21 PRD_900099 C15 C16 SING N N 22 PRD_900099 O15 C11 SING N N 23 PRD_900099 C11 S22 SING N N 24 PRD_900099 C16 O16 SING N N 25 PRD_900099 O12 H1 SING N N 26 PRD_900099 C12 H2 SING N N 27 PRD_900099 C13 H3 SING N N 28 PRD_900099 O13 H4 SING N N 29 PRD_900099 C14 H5 SING N N 30 PRD_900099 O14 H6 SING N N 31 PRD_900099 C15 H7 SING N N 32 PRD_900099 C16 H8 SING N N 33 PRD_900099 C16 H9 SING N N 34 PRD_900099 O16 H10 SING N N 35 PRD_900099 C11 H11 SING N N 36 PRD_900099 C22 H12 SING N N 37 PRD_900099 C21 H13 SING N N 38 PRD_900099 C27 H14 SING N N 39 PRD_900099 C27 H15 SING N N 40 PRD_900099 C27 H16 SING N N 41 PRD_900099 C23 H17 SING N N 42 PRD_900099 O23 H18 SING N N 43 PRD_900099 C24 H19 SING N N 44 PRD_900099 O24 H20 SING N N 45 PRD_900099 C25 H21 SING N N 46 PRD_900099 C26 H22 SING N N 47 PRD_900099 C26 H23 SING N N 48 PRD_900099 O26 H24 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_900099 SMILES ACDLabs 12.01 "OC1C(OC(C(C1O)O)CO)SC2C(O)C(O)C(OC2OC)CO" PRD_900099 InChI InChI 1.03 ;InChI=1S/C13H24O10S/c1-21-12-11(9(19)7(17)4(2-14)22-12)24-13-10(20)8(18)6(16)5(3-15)23-13/h4-20H,2-3H2,1H3/t4-,5-,6-,7- ,8+,9+,10-,11-,12-,13+/m1/s1 ; PRD_900099 InChIKey InChI 1.03 WAYOKHSZGNFKSX-VHGSIDFWSA-N PRD_900099 SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1S[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O" PRD_900099 SMILES CACTVS 3.385 "CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1S[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O" PRD_900099 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)S[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O" PRD_900099 SMILES "OpenEye OEToolkits" 2.0.7 "COC1C(C(C(C(O1)CO)O)O)SC2C(C(C(C(O2)CO)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_900099 "SYSTEMATIC NAME" ACDLabs 12.01 "methyl 2-S-beta-D-glucopyranosyl-2-thio-beta-D-glucopyranoside" PRD_900099 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 ;(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-2-methoxy-4,5-bi s(oxidanyl)oxan-3-yl]sulfanyl-oxane-3,4,5-triol ; #