data_PRDCC_900103 # _chem_comp.id PRD_900103 _chem_comp.name ;beta-D-xylopyranosyl-(1->4)-4-thio-beta-D-xylopyranosyl-(1->4)-4-thio-beta-D-xylopyranosyl-(1->4)-4-thio-beta-D-xylopyr anose ; _chem_comp.type saccharide _chem_comp.formula "C20 H34 O14 S3" _chem_comp.pdbx_release_status REF_ONLY _chem_comp.formula_weight 594.671 _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_900103 S13 S13 S 0 1 N N N 19.893 65.129 31.123 5.100 0.262 1.643 S4 TWY 1 1 1 polymer 1 ? ? ? PRD_900103 C44 C44 C 0 1 N N R 18.791 64.051 30.135 5.837 0.990 0.154 C4 TWY 2 1 1 polymer 1 ? ? ? PRD_900103 C54 C54 C 0 1 N N N 19.659 63.182 29.206 6.612 -0.086 -0.612 C5 TWY 3 1 1 polymer 1 ? ? ? PRD_900103 O54 O54 O 0 1 N N N 18.930 62.582 28.080 7.240 0.502 -1.753 O5 TWY 4 1 1 polymer 1 ? ? ? PRD_900103 C14 C14 C 0 1 N N R 18.278 63.673 27.350 8.185 1.525 -1.436 C1 TWY 5 1 1 polymer 1 ? ? ? PRD_900103 O14 O14 O 0 1 N N N 17.922 63.429 25.990 8.769 2.024 -2.641 O1 TWY 6 1 1 polymer 1 ? ? ? PRD_900103 C24 C24 C 0 1 N N R 17.111 64.042 28.271 7.473 2.666 -0.704 C2 TWY 7 1 1 polymer 1 ? ? ? PRD_900103 O24 O24 O 0 1 N N N 16.085 64.776 27.599 8.427 3.665 -0.335 O2 TWY 8 1 1 polymer 1 ? ? ? PRD_900103 C34 C34 C 0 1 N N R 17.733 64.885 29.373 6.798 2.113 0.555 C3 TWY 9 1 1 polymer 1 ? ? ? PRD_900103 O34 O34 O 0 1 N N N 16.703 65.359 30.240 6.070 3.158 1.205 O3 TWY 10 1 1 polymer 1 ? ? ? PRD_900103 S43 S43 S 0 1 N N N 18.208 63.041 36.790 -0.018 -2.993 -0.001 S4 TWY 11 2 1 polymer 1 ? ? ? PRD_900103 C43 C43 C 0 1 N N R 18.066 63.307 34.984 1.184 -1.866 0.759 C4 TWY 12 2 1 polymer 1 ? ? ? PRD_900103 C53 C53 C 0 1 N N N 19.436 62.960 34.391 1.893 -1.061 -0.334 C5 TWY 13 2 1 polymer 1 ? ? ? PRD_900103 O53 O53 O 0 1 N N N 19.637 63.337 33.004 2.879 -0.216 0.263 O5 TWY 14 2 1 polymer 1 ? ? ? PRD_900103 C13 C13 C 0 1 N N S 19.452 64.743 32.848 3.903 -0.923 0.969 C1 TWY 15 2 1 polymer 1 ? ? ? PRD_900103 C23 C23 C 0 1 N N R 17.988 65.056 33.165 3.274 -1.720 2.114 C2 TWY 16 2 1 polymer 1 ? ? ? PRD_900103 O23 O23 O 0 1 N N N 17.708 66.416 32.851 4.286 -2.472 2.786 O2 TWY 17 2 1 polymer 1 ? ? ? PRD_900103 C33 C33 C 0 1 N N R 17.661 64.752 34.634 2.222 -2.676 1.542 C3 TWY 18 2 1 polymer 1 ? ? ? PRD_900103 O33 O33 O 0 1 N N N 16.256 64.953 34.831 1.577 -3.372 2.611 O3 TWY 19 2 1 polymer 1 ? ? ? PRD_900103 S42 S42 S 0 1 N N N 12.490 61.627 38.808 -5.127 0.278 -1.636 S4 TWY 20 3 1 polymer 1 ? ? ? PRD_900103 C42 C42 C 0 1 N N R 14.208 62.257 38.674 -3.946 -0.924 -0.965 C4 TWY 21 3 1 polymer 1 ? ? ? PRD_900103 C52 C52 C 0 1 N N N 14.399 63.081 37.384 -2.851 -0.187 -0.189 C5 TWY 22 3 1 polymer 1 ? ? ? PRD_900103 O52 O52 O 0 1 N N N 15.773 63.569 37.337 -1.891 -1.130 0.290 O5 TWY 23 3 1 polymer 1 ? ? ? PRD_900103 C12 C12 C 0 1 N N S 16.578 62.407 37.195 -1.226 -1.861 -0.743 C1 TWY 24 3 1 polymer 1 ? ? ? PRD_900103 C22 C22 C 0 1 N N R 16.650 61.711 38.543 -2.256 -2.666 -1.541 C2 TWY 25 3 1 polymer 1 ? ? ? PRD_900103 O22 O22 O 0 1 N N N 17.649 60.675 38.497 -1.602 -3.353 -2.609 O2 TWY 26 3 1 polymer 1 ? ? ? PRD_900103 C32 C32 C 0 1 N N R 15.261 61.135 38.784 -3.306 -1.709 -2.113 C3 TWY 27 3 1 polymer 1 ? ? ? PRD_900103 O32 O32 O 0 1 N N N 15.220 60.536 40.073 -4.312 -2.459 -2.798 O3 TWY 28 3 1 polymer 1 ? ? ? PRD_900103 C11 C11 C 0 1 N N S 11.991 62.798 40.132 -5.879 0.988 -0.145 C1B XYP 29 4 1 polymer 1 ? ? ? PRD_900103 C21 C21 C 0 1 N N R 10.494 63.124 40.026 -6.824 2.125 -0.542 C2B XYP 30 4 1 polymer 1 ? ? ? PRD_900103 C31 C31 C 0 1 N N S 9.962 63.765 41.319 -7.500 2.679 0.716 C3B XYP 31 4 1 polymer 1 ? ? ? PRD_900103 C41 C41 C 0 1 N N R 10.500 63.078 42.579 -8.230 1.539 1.434 C4B XYP 32 4 1 polymer 1 ? ? ? PRD_900103 C51 C51 C 0 1 N N N 12.027 62.998 42.550 -7.230 0.426 1.754 C5B XYP 33 4 1 polymer 1 ? ? ? PRD_900103 O21 O21 O 0 1 N N N 10.312 64.044 38.939 -6.080 3.164 -1.182 O2B XYP 34 4 1 polymer 1 ? ? ? PRD_900103 O31 O31 O 0 1 N N N 8.531 63.704 41.341 -8.440 3.691 0.347 O3B XYP 35 4 1 polymer 1 ? ? ? PRD_900103 O41 O41 O 0 1 N N N 10.096 63.834 43.720 -8.804 2.030 2.647 O4B XYP 36 4 1 polymer 1 ? ? ? PRD_900103 O51 O51 O 0 1 N N N 12.386 62.197 41.399 -6.615 -0.023 0.545 O5B XYP 37 4 1 polymer 1 ? ? ? PRD_900103 H44 H44 H 0 1 N N N 18.219 63.382 30.795 5.049 1.394 -0.483 H4 TWY 38 1 1 polymer 1 ? ? ? PRD_900103 H54 H54 H 0 1 N N N 20.453 63.820 28.792 7.372 -0.519 0.039 H51 TWY 39 1 1 polymer 1 ? ? ? PRD_900103 H54A H54A H 0 0 N N N 20.041 62.350 29.816 5.924 -0.867 -0.937 H52 TWY 40 1 1 polymer 1 ? ? ? PRD_900103 H14 H14 H 0 1 N N N 18.976 64.504 27.170 8.965 1.114 -0.796 H1 TWY 41 1 1 polymer 1 ? ? ? PRD_900103 HO14 HO14 H 0 0 N N N 16.977 63.375 25.915 9.237 1.353 -3.158 HO1 TWY 42 1 1 polymer 1 ? ? ? PRD_900103 H24 H24 H 0 1 N N N 16.615 63.137 28.651 6.720 3.105 -1.358 H2 TWY 43 1 1 polymer 1 ? ? ? PRD_900103 HO24 HO24 H 0 0 N N N 15.367 64.939 28.199 8.896 4.056 -1.084 HO2 TWY 44 1 1 polymer 1 ? ? ? PRD_900103 H34 H34 H 0 1 N N N 18.246 65.758 28.943 7.555 1.719 1.232 H3 TWY 45 1 1 polymer 1 ? ? ? PRD_900103 HO34 HO34 H 0 0 N N N 17.051 65.464 31.118 6.618 3.906 1.480 HO3 TWY 46 1 1 polymer 1 ? ? ? PRD_900103 H43 H43 H 0 1 N N N 17.271 62.672 34.566 0.667 -1.185 1.436 H4 TWY 47 2 1 polymer 1 ? ? ? PRD_900103 H53 H53 H 0 1 N N N 20.196 63.485 34.988 2.374 -1.744 -1.033 H51 TWY 48 2 1 polymer 1 ? ? ? PRD_900103 H53A H53A H 0 0 N N N 19.509 61.863 34.420 1.164 -0.450 -0.866 H52 TWY 49 2 1 polymer 1 ? ? ? PRD_900103 H13 H13 H 0 1 N N N 20.076 65.350 33.520 4.411 -1.604 0.287 H1 TWY 50 2 1 polymer 1 ? ? ? PRD_900103 H23 H23 H 0 1 N N N 17.348 64.410 32.546 2.800 -1.036 2.817 H2 TWY 51 2 1 polymer 1 ? ? ? PRD_900103 HO23 HO23 H 0 0 N N N 17.646 66.920 33.654 4.986 -1.929 3.174 HO2 TWY 52 2 1 polymer 1 ? ? ? PRD_900103 H33 H33 H 0 1 N N N 18.226 65.423 35.297 2.702 -3.393 0.877 H3 TWY 53 2 1 polymer 1 ? ? ? PRD_900103 HO33 HO33 H 0 0 N N N 16.069 64.997 35.761 2.176 -3.907 3.149 HO3 TWY 54 2 1 polymer 1 ? ? ? PRD_900103 H42 H42 H 0 1 N N N 14.369 62.924 39.534 -4.466 -1.612 -0.298 H4 TWY 55 3 1 polymer 1 ? ? ? PRD_900103 H52A H52A H 0 0 N N N 13.700 63.931 37.377 -3.296 0.340 0.656 H51 TWY 56 3 1 polymer 1 ? ? ? PRD_900103 H52 H52 H 0 1 N N N 14.200 62.448 36.507 -2.359 0.530 -0.846 H52 TWY 57 3 1 polymer 1 ? ? ? PRD_900103 H12 H12 H 0 1 N N N 16.194 61.703 36.442 -0.713 -1.166 -1.408 H1 TWY 58 3 1 polymer 1 ? ? ? PRD_900103 H22 H22 H 0 1 N N N 16.934 62.395 39.357 -2.740 -3.389 -0.885 H2 TWY 59 3 1 polymer 1 ? ? ? PRD_900103 HO22 HO22 H 0 0 N N N 17.869 60.487 37.592 -0.923 -3.977 -2.319 HO2 TWY 60 3 1 polymer 1 ? ? ? PRD_900103 H32 H32 H 0 1 N N N 15.037 60.369 38.027 -2.831 -1.017 -2.808 H3 TWY 61 3 1 polymer 1 ? ? ? PRD_900103 HO32 HO32 H 0 0 N N N 15.211 59.590 39.983 -3.977 -2.982 -3.539 HO3 TWY 62 3 1 polymer 1 ? ? ? PRD_900103 H11 H11 H 0 1 N N N 12.493 63.772 40.039 -5.096 1.377 0.506 H1B XYP 63 4 1 polymer 1 ? ? ? PRD_900103 H21 H21 H 0 1 N N N 9.939 62.189 39.857 -7.583 1.745 -1.227 H2B XYP 64 4 1 polymer 1 ? ? ? PRD_900103 H31 H31 H 0 1 N N N 10.309 64.809 41.323 -6.746 3.105 1.377 H3B XYP 65 4 1 polymer 1 ? ? ? PRD_900103 H41 H41 H 0 1 N N N 10.097 62.055 42.625 -9.018 1.149 0.790 H4B XYP 66 4 1 polymer 1 ? ? ? PRD_900103 H51 H51 H 0 1 N N N 12.461 64.005 42.465 -6.465 0.807 2.431 H5B1 XYP 67 4 1 polymer 1 ? ? ? PRD_900103 H51A H51A H 0 0 N N N 12.413 62.548 43.476 -7.752 -0.406 2.227 H5B2 XYP 68 4 1 polymer 1 ? ? ? PRD_900103 HO21 HO21 H 0 0 N N N 10.272 64.931 39.277 -5.621 2.882 -1.985 HO2B XYP 69 4 1 polymer 1 ? ? ? PRD_900103 HO31 HO31 H 0 0 N N N 8.228 63.690 42.241 -8.906 4.086 1.097 HO3B XYP 70 4 1 polymer 1 ? ? ? PRD_900103 HO41 HO41 H 0 0 N N N 10.006 63.255 44.468 -9.283 1.360 3.155 HO4B XYP 71 4 1 polymer 1 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_900103 O21 C21 SING N N 1 PRD_900103 O21 HO21 SING N N 2 PRD_900103 C21 C11 SING N N 3 PRD_900103 C21 C31 SING N N 4 PRD_900103 C21 H21 SING N N 5 PRD_900103 C31 O31 SING N N 6 PRD_900103 C31 C41 SING N N 7 PRD_900103 C31 H31 SING N N 8 PRD_900103 O31 HO31 SING N N 9 PRD_900103 C51 C41 SING N N 10 PRD_900103 C41 O41 SING N N 11 PRD_900103 C41 H41 SING N N 12 PRD_900103 O41 HO41 SING N N 13 PRD_900103 O51 C51 SING N N 14 PRD_900103 C51 H51 SING N N 15 PRD_900103 C51 H51A SING N N 16 PRD_900103 C11 O51 SING N N 17 PRD_900103 S42 C11 SING N N 18 PRD_900103 C11 H11 SING N N 19 PRD_900103 C42 S42 SING N N 20 PRD_900103 C52 C42 SING N N 21 PRD_900103 C42 C32 SING N N 22 PRD_900103 C42 H42 SING N N 23 PRD_900103 C22 C32 SING N N 24 PRD_900103 C32 O32 SING N N 25 PRD_900103 C32 H32 SING N N 26 PRD_900103 O32 HO32 SING N N 27 PRD_900103 C12 C22 SING N N 28 PRD_900103 O22 C22 SING N N 29 PRD_900103 C22 H22 SING N N 30 PRD_900103 O22 HO22 SING N N 31 PRD_900103 O52 C52 SING N N 32 PRD_900103 C52 H52 SING N N 33 PRD_900103 C52 H52A SING N N 34 PRD_900103 C12 O52 SING N N 35 PRD_900103 S43 C12 SING N N 36 PRD_900103 C12 H12 SING N N 37 PRD_900103 C43 S43 SING N N 38 PRD_900103 C53 C43 SING N N 39 PRD_900103 C33 C43 SING N N 40 PRD_900103 C43 H43 SING N N 41 PRD_900103 C23 C33 SING N N 42 PRD_900103 C33 O33 SING N N 43 PRD_900103 C33 H33 SING N N 44 PRD_900103 O33 HO33 SING N N 45 PRD_900103 C13 C23 SING N N 46 PRD_900103 O23 C23 SING N N 47 PRD_900103 C23 H23 SING N N 48 PRD_900103 O23 HO23 SING N N 49 PRD_900103 O53 C53 SING N N 50 PRD_900103 C53 H53 SING N N 51 PRD_900103 C53 H53A SING N N 52 PRD_900103 C13 O53 SING N N 53 PRD_900103 S13 C13 SING N N 54 PRD_900103 C13 H13 SING N N 55 PRD_900103 C44 S13 SING N N 56 PRD_900103 C54 C44 SING N N 57 PRD_900103 C34 C44 SING N N 58 PRD_900103 C44 H44 SING N N 59 PRD_900103 O54 C54 SING N N 60 PRD_900103 C54 H54 SING N N 61 PRD_900103 C54 H54A SING N N 62 PRD_900103 C14 O54 SING N N 63 PRD_900103 O14 C14 SING N N 64 PRD_900103 C14 C24 SING N N 65 PRD_900103 C14 H14 SING N N 66 PRD_900103 O14 HO14 SING N N 67 PRD_900103 O24 C24 SING N N 68 PRD_900103 C24 C34 SING N N 69 PRD_900103 C24 H24 SING N N 70 PRD_900103 O24 HO24 SING N N 71 PRD_900103 C34 O34 SING N N 72 PRD_900103 C34 H34 SING N N 73 PRD_900103 O34 HO34 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_900103 SMILES ACDLabs 10.04 "S(C2COC(SC1C(O)C(O)C(O)OC1)C(O)C2O)C4OCC(SC3OCC(O)C(O)C3O)C(O)C4O" PRD_900103 SMILES_CANONICAL CACTVS 3.341 ;O[C@@H]1CO[C@@H](S[C@@H]2CO[C@@H](S[C@@H]3CO[C@@H](S[C@@H]4CO[C@@H](O)[C@H](O)[C@H]4O)[C@H](O)[C@H]3O)[C@H](O)[C@H]2O)[ C@H](O)[C@H]1O ; PRD_900103 SMILES CACTVS 3.341 "O[CH]1CO[CH](S[CH]2CO[CH](S[CH]3CO[CH](S[CH]4CO[CH](O)[CH](O)[CH]4O)[CH](O)[CH]3O)[CH](O)[CH]2O)[CH](O)[CH]1O" PRD_900103 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 ;C1[C@H]([C@@H]([C@H]([C@@H](O1)S[C@@H]2CO[C@H]([C@@H]([C@H]2O)O)S[C@@H]3CO[C@H]([C@@H]([C@H]3O)O)S[C@@H]4CO[C@H]([C@@H] ([C@H]4O)O)O)O)O)O ; PRD_900103 SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(C(C(O1)SC2COC(C(C2O)O)SC3COC(C(C3O)O)SC4COC(C(C4O)O)O)O)O)O" PRD_900103 InChI InChI 1.03 ;InChI=1S/C20H34O14S3/c21-5-1-32-18(14(27)9(5)22)36-7-3-34-20(16(29)11(7)24)37-8-4-33-19(15(28)12(8)25)35-6-2-31-17(30)1 3(26)10(6)23/h5-30H,1-4H2/t5-,6-,7-,8-,9+,10+,11+,12+,13-,14-,15-,16-,17-,18+,19+,20+/m1/s1 ; PRD_900103 InChIKey InChI 1.03 DHSTUGPKLPBXEA-SVRBUABSSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_900103 "SYSTEMATIC NAME" ACDLabs 10.04 ;beta-D-xylopyranosyl-(1->4)-4-thio-beta-D-xylopyranosyl-(1->4)-4-thio-beta-D-xylopyranosyl-(1->4)-4-thio-beta-D-xylopyr anose ; PRD_900103 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 ;(2S,3R,4S,5R)-2-[(3R,4R,5R,6S)-6-[(3R,4R,5R,6S)-4,5-dihydroxy-6-[(3R,4R,5R,6R)-4,5,6-trihydroxyoxan-3-yl]sulfanyl-oxan- 3-yl]sulfanyl-4,5-dihydroxy-oxan-3-yl]sulfanyloxane-3,4,5-triol ; #