data_PRDCC_900106 # _chem_comp.id PRD_900106 _chem_comp.name 6-S-alpha-D-mannopyranosyl-6-thio-alpha-D-mannopyranose _chem_comp.type saccharide _chem_comp.formula "C12 H22 O10 S" _chem_comp.pdbx_release_status REF_ONLY _chem_comp.formula_weight 358.362 _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_900106 CAA C7 C 0 1 N N S -31.589 3.112 -4.262 3.787 -1.465 -0.849 Z4Y 1 C1 polymer 1 1 1 ? ? ? PRD_900106 OAB O6 O 0 1 N N N -32.430 3.075 -3.110 3.971 -2.354 0.255 Z4Y 1 O1 polymer 1 1 2 ? ? ? PRD_900106 CAC C8 C 0 1 N N S -32.078 2.138 -5.333 4.816 -0.334 -0.771 Z4Y 1 C2 polymer 1 1 3 ? ? ? PRD_900106 OAD O7 O 0 1 N N N -31.287 2.310 -6.493 4.668 0.525 -1.903 Z4Y 1 O2 polymer 1 1 4 ? ? ? PRD_900106 CAE C9 C 0 1 N N S -31.975 0.676 -4.854 4.585 0.467 0.513 Z4Y 1 C3 polymer 1 1 5 ? ? ? PRD_900106 OAF O8 O 0 1 N N N -32.386 -0.258 -5.888 5.494 1.570 0.558 Z4Y 1 O3 polymer 1 1 6 ? ? ? PRD_900106 CAG C10 C 0 1 N N S -30.557 0.379 -4.365 3.145 0.989 0.525 Z4Y 1 C4 polymer 1 1 7 ? ? ? PRD_900106 OAH O9 O 0 1 N N N -30.514 -0.959 -3.825 2.897 1.678 1.752 Z4Y 1 O4 polymer 1 1 8 ? ? ? PRD_900106 CAI C11 C 0 1 N N S -30.127 1.404 -3.300 2.181 -0.193 0.397 Z4Y 1 C5 polymer 1 1 9 ? ? ? PRD_900106 CAJ C12 C 0 1 N N N -28.666 1.262 -2.786 0.743 0.325 0.348 Z4Y 1 C6 polymer 1 1 10 ? ? ? PRD_900106 SAK S1 S 0 1 N N N -27.436 1.424 -4.105 -0.406 -1.079 0.345 Z4Y 1 S6 polymer 1 1 11 ? ? ? PRD_900106 OAL O10 O 0 1 N N N -30.245 2.760 -3.817 2.470 -0.914 -0.803 Z4Y 1 O5 polymer 1 1 12 ? ? ? PRD_900106 C1 C1 C 0 1 N N R -25.904 1.999 -3.210 -2.032 -0.276 0.285 MAN 2 C1 polymer 1 1 13 ? ? ? PRD_900106 C2 C2 C 0 1 N N S -24.615 2.000 -4.088 -3.126 -1.320 0.526 MAN 2 C2 polymer 1 1 14 ? ? ? PRD_900106 C3 C3 C 0 1 N N S -24.216 0.572 -4.408 -4.497 -0.646 0.414 MAN 2 C3 polymer 1 1 15 ? ? ? PRD_900106 C4 C4 C 0 1 N N S -24.016 -0.200 -3.100 -4.617 0.015 -0.963 MAN 2 C4 polymer 1 1 16 ? ? ? PRD_900106 C5 C5 C 0 1 N N R -25.376 -0.274 -2.373 -3.466 1.007 -1.146 MAN 2 C5 polymer 1 1 17 ? ? ? PRD_900106 C6 C6 C 0 1 N N N -25.357 -1.091 -1.087 -3.569 2.110 -0.091 MAN 2 C6 polymer 1 1 18 ? ? ? PRD_900106 O2 O1 O 0 1 N N N -23.460 2.484 -3.366 -2.973 -1.878 1.832 MAN 2 O2 polymer 1 1 19 ? ? ? PRD_900106 O3 O2 O 0 1 N N N -22.941 0.600 -5.051 -4.627 0.347 1.434 MAN 2 O3 polymer 1 1 20 ? ? ? PRD_900106 O4 O3 O 0 1 N N N -23.412 -1.485 -3.375 -4.552 -0.985 -1.981 MAN 2 O4 polymer 1 1 21 ? ? ? PRD_900106 O5 O4 O 0 1 N N N -25.779 1.110 -2.058 -2.220 0.322 -0.999 MAN 2 O5 polymer 1 1 22 ? ? ? PRD_900106 O6 O5 O 0 1 N N N -24.504 -0.436 -0.145 -2.589 3.116 -0.355 MAN 2 O6 polymer 1 1 23 ? ? ? PRD_900106 HAA H12 H 0 1 N N N -31.581 4.126 -4.688 3.919 -2.013 -1.782 Z4Y 1 H1 polymer 1 1 24 ? ? ? PRD_900106 HOAB H13 H 0 1 N N N -32.105 3.688 -2.461 3.351 -3.096 0.271 Z4Y 1 HO1 polymer 1 1 25 ? ? ? PRD_900106 HAC H14 H 0 1 N N N -33.132 2.359 -5.555 5.821 -0.756 -0.762 Z4Y 1 H2 polymer 1 1 26 ? ? ? PRD_900106 HOAD H15 H 0 1 N N N -31.350 3.211 -6.789 4.800 0.082 -2.753 Z4Y 1 HO2 polymer 1 1 27 ? ? ? PRD_900106 HAE H16 H 0 1 N N N -32.652 0.564 -3.994 4.747 -0.176 1.379 Z4Y 1 H3 polymer 1 1 28 ? ? ? PRD_900106 HOAF H17 H 0 1 N N N -32.311 -1.147 -5.561 6.426 1.312 0.547 Z4Y 1 HO3 polymer 1 1 29 ? ? ? PRD_900106 HAG H18 H 0 1 N N N -29.869 0.456 -5.220 2.999 1.672 -0.312 Z4Y 1 H4 polymer 1 1 30 ? ? ? PRD_900106 HOAH H19 H 0 1 N N N -29.635 -1.150 -3.519 3.477 2.437 1.902 Z4Y 1 HO4 polymer 1 1 31 ? ? ? PRD_900106 HAI H20 H 0 1 N N N -30.797 1.293 -2.435 2.300 -0.854 1.256 Z4Y 1 H5 polymer 1 1 32 ? ? ? PRD_900106 HAJ H21 H 0 1 N N N -28.553 0.272 -2.320 0.551 0.950 1.220 Z4Y 1 H61 polymer 1 1 33 ? ? ? PRD_900106 HAJA H22 H 0 1 N N N -28.481 2.044 -2.035 0.599 0.913 -0.559 Z4Y 1 H62 polymer 1 1 34 ? ? ? PRD_900106 H1 H1 H 0 1 N N N -26.116 3.027 -2.881 -2.086 0.493 1.055 MAN 2 H1 polymer 1 1 35 ? ? ? PRD_900106 H2 H2 H 0 1 N N N -24.787 2.572 -5.012 -3.045 -2.111 -0.220 MAN 2 H2 polymer 1 1 36 ? ? ? PRD_900106 H3 H4 H 0 1 N N N -24.981 0.084 -5.030 -5.281 -1.394 0.529 MAN 2 H3 polymer 1 1 37 ? ? ? PRD_900106 H4 H6 H 0 1 N N N -23.332 0.385 -2.467 -5.568 0.544 -1.031 MAN 2 H4 polymer 1 1 38 ? ? ? PRD_900106 H5 H8 H 0 1 N N N -26.112 -0.718 -3.060 -3.522 1.450 -2.141 MAN 2 H5 polymer 1 1 39 ? ? ? PRD_900106 H6 H10 H 0 1 N N N -24.974 -2.101 -1.295 -3.395 1.684 0.897 MAN 2 H61 polymer 1 1 40 ? ? ? PRD_900106 H6A H9 H 0 1 N N N -26.376 -1.162 -0.678 -4.563 2.554 -0.125 MAN 2 H62 polymer 1 1 41 ? ? ? PRD_900106 HO2 H3 H 0 1 N N N -23.602 3.388 -3.111 -2.124 -2.317 1.976 MAN 2 HO2 polymer 1 1 42 ? ? ? PRD_900106 HO3 H5 H 0 1 N N N -22.672 -0.287 -5.260 -4.553 -0.002 2.333 MAN 2 HO3 polymer 1 1 43 ? ? ? PRD_900106 HO4 H7 H 0 1 N N N -23.290 -1.959 -2.561 -5.251 -1.651 -1.923 MAN 2 HO4 polymer 1 1 44 ? ? ? PRD_900106 HO6 H11 H 0 1 N N N -24.482 -0.935 0.663 -2.596 3.848 0.276 MAN 2 HO6 polymer 1 1 45 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_900106 OAD CAC SING N N 1 PRD_900106 OAF CAE SING N N 2 PRD_900106 CAC CAE SING N N 3 PRD_900106 CAC CAA SING N N 4 PRD_900106 O3 C3 SING N N 5 PRD_900106 CAE CAG SING N N 6 PRD_900106 C3 C2 SING N N 7 PRD_900106 C3 C4 SING N N 8 PRD_900106 CAG OAH SING N N 9 PRD_900106 CAG CAI SING N N 10 PRD_900106 CAA OAL SING N N 11 PRD_900106 CAA OAB SING N N 12 PRD_900106 SAK C1 SING N N 13 PRD_900106 SAK CAJ SING N N 14 PRD_900106 C2 O2 SING N N 15 PRD_900106 C2 C1 SING N N 16 PRD_900106 OAL CAI SING N N 17 PRD_900106 O4 C4 SING N N 18 PRD_900106 CAI CAJ SING N N 19 PRD_900106 C1 O5 SING N N 20 PRD_900106 C4 C5 SING N N 21 PRD_900106 C5 O5 SING N N 22 PRD_900106 C5 C6 SING N N 23 PRD_900106 C6 O6 SING N N 24 PRD_900106 C1 H1 SING N N 25 PRD_900106 C2 H2 SING N N 26 PRD_900106 O2 HO2 SING N N 27 PRD_900106 C3 H3 SING N N 28 PRD_900106 O3 HO3 SING N N 29 PRD_900106 C4 H4 SING N N 30 PRD_900106 O4 HO4 SING N N 31 PRD_900106 C5 H5 SING N N 32 PRD_900106 C6 H6A SING N N 33 PRD_900106 C6 H6 SING N N 34 PRD_900106 O6 HO6 SING N N 35 PRD_900106 CAA HAA SING N N 36 PRD_900106 OAB HOAB SING N N 37 PRD_900106 CAC HAC SING N N 38 PRD_900106 OAD HOAD SING N N 39 PRD_900106 CAE HAE SING N N 40 PRD_900106 OAF HOAF SING N N 41 PRD_900106 CAG HAG SING N N 42 PRD_900106 OAH HOAH SING N N 43 PRD_900106 CAI HAI SING N N 44 PRD_900106 CAJ HAJ SING N N 45 PRD_900106 CAJ HAJA SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_900106 SMILES ACDLabs 12.01 "C1(OC(C(C(C1O)O)O)CO)SCC2C(C(C(C(O2)O)O)O)O" PRD_900106 InChI InChI 1.03 ;InChI=1S/C12H22O10S/c13-1-3-5(14)8(17)10(19)12(22-3)23-2-4-6(15)7(16)9(18)11(20)21-4/h3-20H,1-2H2/t3-,4-,5-,6-,7+,8+,9+ ,10+,11+,12-/m1/s1 ; PRD_900106 InChIKey InChI 1.03 KLUQTOWGMHJQAC-LBGGPIGOSA-N PRD_900106 SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@H](SC[C@H]2O[C@H](O)[C@@H](O)[C@@H](O)[C@@H]2O)[C@@H](O)[C@@H](O)[C@@H]1O" PRD_900106 SMILES CACTVS 3.385 "OC[CH]1O[CH](SC[CH]2O[CH](O)[CH](O)[CH](O)[CH]2O)[CH](O)[CH](O)[CH]1O" PRD_900106 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)SC[C@@H]2[C@H]([C@@H]([C@@H]([C@H](O2)O)O)O)O)O)O)O)O" PRD_900106 SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)SCC2C(C(C(C(O2)O)O)O)O)O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_900106 "SYSTEMATIC NAME" ACDLabs 12.01 6-S-alpha-D-mannopyranosyl-6-thio-alpha-D-mannopyranose PRD_900106 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 ;(2~{S},3~{S},4~{S},5~{S},6~{S})-6-[[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]sul fanylmethyl]oxane-2,3,4,5-tetrol ; #