data_PRDCC_900107 # _chem_comp.id PRD_900107 _chem_comp.name "methyl alpha-D-mannopyranosyl-(1->3)-[alpha-D-mannopyranosyl-(1->6)]-3-thio-alpha-D-mannopyranoside" _chem_comp.type saccharide _chem_comp.formula "C19 H34 O15 S" _chem_comp.pdbx_release_status REF_ONLY _chem_comp.formula_weight 534.529 _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_900107 O42 O42 O 0 1 N N N 30.812 67.784 12.704 -0.231 -2.235 1.693 O4 Z4R 1 1 1 polymer 1 ? ? ? PRD_900107 C42 C42 C 0 1 N N R 29.482 67.235 12.754 -0.157 -1.358 0.568 C4 Z4R 2 1 1 polymer 1 ? ? ? PRD_900107 C52 C52 C 0 1 N N R 28.693 67.672 11.514 1.034 -0.411 0.736 C5 Z4R 3 1 1 polymer 1 ? ? ? PRD_900107 C62 C62 C 0 1 N N N 28.952 66.739 10.350 2.331 -1.222 0.769 C6 Z4R 4 1 1 polymer 1 ? ? ? PRD_900107 O11 O11 O 0 1 N N N 30.367 66.782 10.065 3.431 -0.352 1.040 O6 Z4R 5 1 1 polymer 1 ? ? ? PRD_900107 O02 O02 O 0 1 N N N 27.292 67.522 11.762 1.072 0.504 -0.362 O5 Z4R 6 1 1 polymer 1 ? ? ? PRD_900107 C12 C12 C 0 1 N N S 26.770 68.164 12.938 -0.086 1.334 -0.470 C1 Z4R 7 1 1 polymer 1 ? ? ? PRD_900107 O12 O12 O 0 1 N N N 27.078 69.567 12.926 -0.243 2.091 0.731 O1 Z4R 8 1 1 polymer 1 ? ? ? PRD_900107 C22 C22 C 0 1 N N N 26.215 70.145 11.885 0.747 3.106 0.912 C1M Z4R 9 1 1 polymer 1 ? ? ? PRD_900107 C01 C01 C 0 1 N N R 27.372 67.492 14.150 -1.322 0.457 -0.687 C2 Z4R 10 1 1 polymer 1 ? ? ? PRD_900107 O22 O22 O 0 1 N N N 27.034 66.081 14.104 -1.189 -0.262 -1.915 O2 Z4R 11 1 1 polymer 1 ? ? ? PRD_900107 C32 C32 C 0 1 N N S 28.892 67.675 14.082 -1.445 -0.534 0.475 C3 Z4R 12 1 1 polymer 1 ? ? ? PRD_900107 S13 S13 S 0 1 N N N 29.757 66.715 15.404 -2.853 -1.640 0.183 S3 Z4R 13 1 1 polymer 1 ? ? ? PRD_900107 C13 C13 C 0 1 N N R 29.853 67.927 16.717 -4.275 -0.515 0.243 C1 MAN 14 2 1 polymer 1 ? ? ? PRD_900107 C23 C23 C 0 1 N N S 31.016 67.565 17.604 -5.570 -1.331 0.260 C2 MAN 15 2 1 polymer 1 ? ? ? PRD_900107 C33 C33 C 0 1 N N S 30.804 66.203 18.239 -6.767 -0.374 0.250 C3 MAN 16 2 1 polymer 1 ? ? ? PRD_900107 C43 C43 C 0 1 N N S 29.508 66.280 19.045 -6.668 0.536 -0.978 C4 MAN 17 2 1 polymer 1 ? ? ? PRD_900107 C53 C53 C 0 1 N N R 28.315 66.730 18.165 -5.331 1.280 -0.946 C5 MAN 18 2 1 polymer 1 ? ? ? PRD_900107 C63 C63 C 0 1 N N N 27.041 66.875 18.965 -5.270 2.169 0.297 C6 MAN 19 2 1 polymer 1 ? ? ? PRD_900107 O23 O23 O 0 1 N N N 31.273 68.570 18.582 -5.613 -2.136 1.439 O2 MAN 20 2 1 polymer 1 ? ? ? PRD_900107 O33 O33 O 0 1 N N N 31.906 65.783 19.049 -6.753 0.421 1.437 O3 MAN 21 2 1 polymer 1 ? ? ? PRD_900107 O43 O43 O 0 1 N N N 29.143 65.041 19.615 -6.748 -0.254 -2.166 O4 MAN 22 2 1 polymer 1 ? ? ? PRD_900107 O03 O03 O 0 1 N N N 28.645 67.976 17.509 -4.261 0.332 -0.907 O5 MAN 23 2 1 polymer 1 ? ? ? PRD_900107 O63 O63 O 0 1 N N N 27.064 67.716 19.976 -4.091 2.976 0.249 O6 MAN 24 2 1 polymer 1 ? ? ? PRD_900107 C11 C11 C 0 1 N N S 30.738 65.632 9.303 4.696 -1.013 1.093 C1 MAN 25 3 1 polymer 1 ? ? ? PRD_900107 C21 C21 C 0 1 N N S 32.208 65.689 8.935 5.756 -0.047 1.628 C2 MAN 26 3 1 polymer 1 ? ? ? PRD_900107 C31 C31 C 0 1 N N S 32.529 66.575 7.719 5.890 1.137 0.665 C3 MAN 27 3 1 polymer 1 ? ? ? PRD_900107 C41 C41 C 0 1 N N S 31.479 66.465 6.620 6.237 0.608 -0.730 C4 MAN 28 3 1 polymer 1 ? ? ? PRD_900107 C51 C51 C 0 1 N N R 30.088 66.638 7.256 5.159 -0.384 -1.175 C5 MAN 29 3 1 polymer 1 ? ? ? PRD_900107 C61 C61 C 0 1 N N N 28.956 66.523 6.205 5.530 -0.962 -2.542 C6 MAN 30 3 1 polymer 1 ? ? ? PRD_900107 O21 O21 O 0 1 N N N 32.587 64.284 8.560 7.011 -0.723 1.731 O2 MAN 31 3 1 polymer 1 ? ? ? PRD_900107 O31 O31 O 0 1 N N N 33.806 66.103 7.188 6.928 2.007 1.118 O3 MAN 32 3 1 polymer 1 ? ? ? PRD_900107 O41 O41 O 0 1 N N N 31.642 67.570 5.695 6.293 1.697 -1.653 O4 MAN 33 3 1 polymer 1 ? ? ? PRD_900107 O01 O01 O 0 1 N N N 29.918 65.494 8.155 5.065 -1.443 -0.220 O5 MAN 34 3 1 polymer 1 ? ? ? PRD_900107 O61 O61 O 0 1 N N N 27.700 66.750 6.874 4.469 -1.799 -3.009 O6 MAN 35 3 1 polymer 1 ? ? ? PRD_900107 HO42 HO42 H 0 0 N N N 31.071 67.905 11.798 0.555 -2.785 1.816 HO4 Z4R 36 1 1 polymer 1 ? ? ? PRD_900107 H42 H42 H 0 1 N N N 29.458 66.136 12.718 -0.032 -1.942 -0.344 H4 Z4R 37 1 1 polymer 1 ? ? ? PRD_900107 H52 H52 H 0 1 N N N 28.995 68.707 11.295 0.929 0.145 1.668 H5 Z4R 38 1 1 polymer 1 ? ? ? PRD_900107 H62A H62A H 0 0 N N N 28.639 65.714 10.599 2.265 -1.980 1.550 H61 Z4R 39 1 1 polymer 1 ? ? ? PRD_900107 H62 H62 H 0 1 N N N 28.378 67.064 9.469 2.480 -1.707 -0.196 H62 Z4R 40 1 1 polymer 1 ? ? ? PRD_900107 H12 H12 H 0 1 N N N 25.675 68.068 12.965 0.031 2.012 -1.315 H1 Z4R 41 1 1 polymer 1 ? ? ? PRD_900107 H22 H22 H 0 1 N N N 25.201 70.289 12.287 1.735 2.647 0.949 H51 Z4R 42 1 1 polymer 1 ? ? ? PRD_900107 H22A H22A H 0 0 N N N 26.624 71.115 11.566 0.703 3.809 0.080 H52 Z4R 43 1 1 polymer 1 ? ? ? PRD_900107 H22B H22B H 0 0 N N N 26.174 69.463 11.023 0.557 3.635 1.846 H53 Z4R 44 1 1 polymer 1 ? ? ? PRD_900107 H01 H01 H 0 1 N N N 26.988 67.926 15.085 -2.212 1.085 -0.726 H2 Z4R 45 1 1 polymer 1 ? ? ? PRD_900107 HO22 HO22 H 0 0 N N N 26.960 65.802 13.199 -1.102 0.304 -2.694 HO2 Z4R 46 1 1 polymer 1 ? ? ? PRD_900107 H32 H32 H 0 1 N N N 29.049 68.755 14.216 -1.596 0.013 1.406 H3 Z4R 47 1 1 polymer 1 ? ? ? PRD_900107 H13 H13 H 0 1 N N N 29.985 68.921 16.264 -4.218 0.095 1.145 H1 MAN 48 2 1 polymer 1 ? ? ? PRD_900107 H23 H23 H 0 1 N N N 31.914 67.506 16.971 -5.608 -1.972 -0.621 H2 MAN 49 2 1 polymer 1 ? ? ? PRD_900107 H33 H33 H 0 1 N N N 30.732 65.439 17.451 -7.692 -0.948 0.207 H3 MAN 50 2 1 polymer 1 ? ? ? PRD_900107 H43 H43 H 0 1 N N N 29.715 67.012 19.839 -7.486 1.257 -0.963 H4 MAN 51 2 1 polymer 1 ? ? ? PRD_900107 H53 H53 H 0 1 N N N 28.133 65.949 17.412 -5.236 1.897 -1.840 H5 MAN 52 2 1 polymer 1 ? ? ? PRD_900107 H63 H63 H 0 1 N N N 26.263 67.226 18.271 -6.149 2.812 0.327 H61 MAN 53 2 1 polymer 1 ? ? ? PRD_900107 H63A H63A H 0 0 N N N 26.866 65.886 19.414 -5.246 1.544 1.190 H62 MAN 54 2 1 polymer 1 ? ? ? PRD_900107 HO23 HO23 H 0 0 N N N 31.330 68.169 19.441 -4.880 -2.764 1.514 HO2 MAN 55 2 1 polymer 1 ? ? ? PRD_900107 HO33 HO33 H 0 0 N N N 32.681 65.690 18.507 -6.805 -0.092 2.255 HO3 MAN 56 2 1 polymer 1 ? ? ? PRD_900107 HO43 HO43 H 0 0 N N N 29.061 64.388 18.929 -7.572 -0.753 -2.252 HO4 MAN 57 2 1 polymer 1 ? ? ? PRD_900107 HO63 HO63 H 0 0 N N N 27.070 67.230 20.792 -3.988 3.566 1.008 HO6 MAN 58 2 1 polymer 1 ? ? ? PRD_900107 H11 H11 H 0 1 N N N 30.581 64.739 9.925 4.627 -1.878 1.752 H1 MAN 59 3 1 polymer 1 ? ? ? PRD_900107 H21 H21 H 0 1 N N N 32.753 66.114 9.790 5.455 0.315 2.611 H2 MAN 60 3 1 polymer 1 ? ? ? PRD_900107 H31 H31 H 0 1 N N N 32.555 67.627 8.038 4.947 1.683 0.625 H3 MAN 61 3 1 polymer 1 ? ? ? PRD_900107 H41 H41 H 0 1 N N N 31.584 65.495 6.111 7.204 0.105 -0.699 H4 MAN 62 3 1 polymer 1 ? ? ? PRD_900107 H51 H51 H 0 1 N N N 30.030 67.623 7.743 4.200 0.129 -1.245 H5 MAN 63 3 1 polymer 1 ? ? ? PRD_900107 H61 H61 H 0 1 N N N 29.101 67.274 5.414 5.688 -0.148 -3.250 H61 MAN 64 3 1 polymer 1 ? ? ? PRD_900107 H61A H61A H 0 0 N N N 28.966 65.525 5.742 6.444 -1.549 -2.453 H62 MAN 65 3 1 polymer 1 ? ? ? PRD_900107 HO21 HO21 H 0 0 N N N 32.667 64.218 7.616 6.998 -1.488 2.323 HO2 MAN 66 3 1 polymer 1 ? ? ? PRD_900107 HO31 HO31 H 0 0 N N N 33.739 66.001 6.246 6.777 2.374 2.000 HO3 MAN 67 3 1 polymer 1 ? ? ? PRD_900107 HO41 HO41 H 0 0 N N N 31.678 68.386 6.179 6.956 2.366 -1.433 HO4 MAN 68 3 1 polymer 1 ? ? ? PRD_900107 HO61 HO61 H 0 0 N N N 27.845 66.800 7.812 4.636 -2.200 -3.872 HO6 MAN 69 3 1 polymer 1 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_900107 C51 O01 SING N N 1 PRD_900107 C51 C41 SING N N 2 PRD_900107 C51 C61 SING N N 3 PRD_900107 O01 C11 SING N N 4 PRD_900107 C11 O11 SING N N 5 PRD_900107 C11 C21 SING N N 6 PRD_900107 O11 C62 SING N N 7 PRD_900107 C21 O21 SING N N 8 PRD_900107 C21 C31 SING N N 9 PRD_900107 C31 O31 SING N N 10 PRD_900107 C31 C41 SING N N 11 PRD_900107 C41 O41 SING N N 12 PRD_900107 C61 O61 SING N N 13 PRD_900107 C52 O02 SING N N 14 PRD_900107 C52 C42 SING N N 15 PRD_900107 C52 C62 SING N N 16 PRD_900107 O02 C12 SING N N 17 PRD_900107 C12 O12 SING N N 18 PRD_900107 C12 C01 SING N N 19 PRD_900107 O12 C22 SING N N 20 PRD_900107 C01 O22 SING N N 21 PRD_900107 C01 C32 SING N N 22 PRD_900107 C32 C42 SING N N 23 PRD_900107 C32 S13 SING N N 24 PRD_900107 C42 O42 SING N N 25 PRD_900107 C53 O03 SING N N 26 PRD_900107 C53 C43 SING N N 27 PRD_900107 C53 C63 SING N N 28 PRD_900107 O03 C13 SING N N 29 PRD_900107 C13 S13 SING N N 30 PRD_900107 C13 C23 SING N N 31 PRD_900107 C23 O23 SING N N 32 PRD_900107 C23 C33 SING N N 33 PRD_900107 C33 O33 SING N N 34 PRD_900107 C33 C43 SING N N 35 PRD_900107 C43 O43 SING N N 36 PRD_900107 C63 O63 SING N N 37 PRD_900107 C51 H51 SING N N 38 PRD_900107 C11 H11 SING N N 39 PRD_900107 C21 H21 SING N N 40 PRD_900107 O21 HO21 SING N N 41 PRD_900107 C31 H31 SING N N 42 PRD_900107 O31 HO31 SING N N 43 PRD_900107 C41 H41 SING N N 44 PRD_900107 O41 HO41 SING N N 45 PRD_900107 C61 H61 SING N N 46 PRD_900107 C61 H61A SING N N 47 PRD_900107 O61 HO61 SING N N 48 PRD_900107 C52 H52 SING N N 49 PRD_900107 C12 H12 SING N N 50 PRD_900107 C22 H22 SING N N 51 PRD_900107 C22 H22A SING N N 52 PRD_900107 C22 H22B SING N N 53 PRD_900107 C01 H01 SING N N 54 PRD_900107 O22 HO22 SING N N 55 PRD_900107 C32 H32 SING N N 56 PRD_900107 C42 H42 SING N N 57 PRD_900107 O42 HO42 SING N N 58 PRD_900107 C62 H62 SING N N 59 PRD_900107 C62 H62A SING N N 60 PRD_900107 C53 H53 SING N N 61 PRD_900107 C13 H13 SING N N 62 PRD_900107 C23 H23 SING N N 63 PRD_900107 O23 HO23 SING N N 64 PRD_900107 C33 H33 SING N N 65 PRD_900107 O33 HO33 SING N N 66 PRD_900107 C43 H43 SING N N 67 PRD_900107 O43 HO43 SING N N 68 PRD_900107 C63 H63 SING N N 69 PRD_900107 C63 H63A SING N N 70 PRD_900107 O63 HO63 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_900107 SMILES ACDLabs 10.04 "S(C2C(O)C(OC)OC(COC1OC(CO)C(O)C(O)C1O)C2O)C3OC(C(O)C(O)C3O)CO" PRD_900107 SMILES_CANONICAL CACTVS 3.341 ;CO[C@H]1O[C@H](CO[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]2O)[C@@H](O)[C@H](S[C@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]3O)[C @@H]1O ; PRD_900107 SMILES CACTVS 3.341 "CO[CH]1O[CH](CO[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH](O)[CH](S[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)[CH]1O" PRD_900107 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 ;CO[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO[C@@H]2[C@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O)S[C@@H]3[C@H]([C@H]([C@@H]([C@H](O 3)CO)O)O)O)O ; PRD_900107 SMILES "OpenEye OEToolkits" 1.5.0 "COC1C(C(C(C(O1)COC2C(C(C(C(O2)CO)O)O)O)O)SC3C(C(C(C(O3)CO)O)O)O)O" PRD_900107 InChI InChI 1.03 ;InChI=1S/C19H34O15S/c1-30-17-15(29)16(35-19-14(28)12(26)9(23)6(3-21)34-19)10(24)7(33-17)4-31-18-13(27)11(25)8(22)5(2-20 )32-18/h5-29H,2-4H2,1H3/t5-,6-,7-,8-,9-,10-,11+,12+,13+,14+,15+,16+,17+,18+,19-/m1/s1 ; PRD_900107 InChIKey InChI 1.03 MECMOIIFPKBROO-OINXDFOBSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_900107 "SYSTEMATIC NAME" ACDLabs 10.04 "methyl alpha-D-mannopyranosyl-(1->3)-[alpha-D-mannopyranosyl-(1->6)]-3-thio-alpha-D-mannopyranoside" PRD_900107 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 ;(2S,3S,4S,5S,6R)-2-[[(2R,3R,4S,5R,6S)-3,5-dihydroxy-6-methoxy-4-[(2R,3S,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxa n-2-yl]sulfanyl-oxan-2-yl]methoxy]-6-(hydroxymethyl)oxane-3,4,5-triol ; #