data_PRDCC_900110
#
_chem_comp.id PRD_900110
_chem_comp.name "ACARBOSE DERIVED TRISACCHARIDE"
_chem_comp.type SACCHARIDE
_chem_comp.formula "C19 H33 N O13"
_chem_comp.pdbx_release_status REF_ONLY
_chem_comp.formula_weight 483.464
_chem_comp.pdbx_type ?
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge ?
_chem_comp.pdbx_initial_date ?
_chem_comp.pdbx_modified_date ?
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ?
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag ?
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag ?
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_pcm ?
_chem_comp.pdbx_processing_site ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
_chem_comp_atom.pdbx_residue_numbering
_chem_comp_atom.pdbx_ref_id
_chem_comp_atom.pdbx_polymer_type
_chem_comp_atom.pdbx_component_id
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
PRD_900110 C1X C1X C 0 1 N N S 1.473 15.332 39.913 5.981 1.234 -0.167 C1 GLC 1 1 1 polymer 1 ? ? ?
PRD_900110 C2X C2X C 0 1 N N R 1.721 14.497 41.191 5.869 -0.051 0.656 C2 GLC 2 1 1 polymer 1 ? ? ?
PRD_900110 C3X C3X C 0 1 N N R 2.836 15.143 42.033 4.631 -0.831 0.199 C3 GLC 3 1 1 polymer 1 ? ? ?
PRD_900110 C4X C4X C 0 1 N N S 4.114 15.214 41.173 3.413 0.098 0.269 C4 GLC 4 1 1 polymer 1 ? ? ?
PRD_900110 C5X C5X C 0 1 N N R 3.795 16.077 39.907 3.710 1.373 -0.523 C5 GLC 5 1 1 polymer 1 ? ? ?
PRD_900110 C6X C6X C 0 1 N N N 5.027 16.195 38.983 2.488 2.293 -0.485 C6 GLC 6 1 1 polymer 1 ? ? ?
PRD_900110 O1X O1X O 0 1 N Y N 0.949 16.610 40.219 6.076 0.904 -1.553 O1 GLC 7 1 1 polymer 1 ? ? ?
PRD_900110 O2X O2X O 0 1 N N N 0.519 14.404 41.935 7.037 -0.851 0.460 O2 GLC 8 1 1 polymer 1 ? ? ?
PRD_900110 O3X O3X O 0 1 N N N 3.066 14.365 43.189 4.425 -1.956 1.055 O3 GLC 9 1 1 polymer 1 ? ? ?
PRD_900110 O4X O4X O 0 1 N N N 5.175 15.808 41.928 2.276 -0.561 -0.294 O4 GLC 10 1 1 polymer 1 ? ? ?
PRD_900110 O5X O5X O 0 1 N N N 2.704 15.471 39.169 4.829 2.048 0.048 O5 GLC 11 1 1 polymer 1 ? ? ?
PRD_900110 O6X O6X O 0 1 N N N 4.842 17.235 38.034 2.733 3.445 -1.295 O6 GLC 12 1 1 polymer 1 ? ? ?
PRD_900110 C1Y C1Y C 0 1 N N R 6.342 15.008 42.008 1.696 -1.347 0.749 C1 AC1 13 2 1 polymer 1 ? ? ?
PRD_900110 O2Y O2Y O 0 1 N N N 5.669 14.149 44.161 1.427 -3.228 -0.746 O2 AC1 14 2 1 polymer 1 ? ? ?
PRD_900110 C2Y C2Y C 0 1 N N R 6.762 14.726 43.468 0.721 -2.357 0.141 C2 AC1 15 2 1 polymer 1 ? ? ?
PRD_900110 C4Z C4Z C 0 1 N N R 12.685 17.950 43.475 -6.130 0.354 -0.354 C4 AC1 16 2 1 polymer 1 ? ? ?
PRD_900110 C3Y C3Y C 0 1 N N S 7.230 16.025 44.149 -0.363 -1.600 -0.635 C3A AC1 17 2 1 polymer 1 ? ? ?
PRD_900110 O3Y O3Y O 0 1 N N N 7.626 15.740 45.470 -1.361 -2.519 -1.084 O3A AC1 18 2 1 polymer 1 ? ? ?
PRD_900110 C4Y C4Y C 0 1 N N S 8.423 16.599 43.341 -0.997 -0.562 0.297 C4A AC1 19 2 1 polymer 1 ? ? ?
PRD_900110 N4Y N4Y N 0 1 N N N 8.927 17.881 43.945 -1.931 0.277 -0.465 N4A AC1 20 2 1 polymer 1 ? ? ?
PRD_900110 C5Y C5Y C 0 1 N N R 7.922 16.868 41.896 0.108 0.314 0.893 C5A AC1 21 2 1 polymer 1 ? ? ?
PRD_900110 O5Y O5Y O 0 1 N N N 7.432 15.638 41.306 1.003 -0.493 1.657 O5 AC1 22 2 1 polymer 1 ? ? ?
PRD_900110 C6Y C6Y C 0 1 N N N 9.054 17.425 41.037 -0.517 1.377 1.798 C6A AC1 23 2 1 polymer 1 ? ? ?
PRD_900110 C1Z C1Z C 0 1 N N S 10.026 17.823 44.976 -3.245 -0.376 -0.386 C1B AC1 24 2 1 polymer 1 ? ? ?
PRD_900110 C2Z C2Z C 0 1 N N S 10.902 19.112 44.942 -4.049 -0.052 -1.647 C2B AC1 25 2 1 polymer 1 ? ? ?
PRD_900110 O2Z O2Z O 0 1 N N N 10.078 20.235 45.062 -4.031 1.356 -1.889 O2B AC1 26 2 1 polymer 1 ? ? ?
PRD_900110 C3Z C3Z C 0 1 N N S 11.728 19.169 43.617 -5.493 -0.521 -1.436 C3B AC1 27 2 1 polymer 1 ? ? ?
PRD_900110 O3Z O3Z O 0 1 N N N 12.497 20.347 43.556 -5.505 -1.887 -1.018 O3B AC1 28 2 1 polymer 1 ? ? ?
PRD_900110 O4Z O4Z O 0 1 N N N 12.974 17.699 42.120 -6.339 1.668 -0.875 O4 AC1 29 2 1 polymer 1 ? ? ?
PRD_900110 C5Z C5Z C 0 1 N N N 12.142 16.648 44.147 -5.230 0.431 0.844 C5B AC1 30 2 1 polymer 1 ? ? ?
PRD_900110 C6Z C6Z C 0 1 N N N 10.944 16.588 44.818 -3.974 0.118 0.829 C7B AC1 31 2 1 polymer 1 ? ? ?
PRD_900110 C7Z C7Z C 0 1 N N N 12.988 15.393 44.073 -5.825 0.903 2.146 C6B AC1 32 2 1 polymer 1 ? ? ?
PRD_900110 O7Z O7Z O 0 1 N N N 13.939 15.440 45.112 -4.816 0.907 3.157 O6B AC1 33 2 1 polymer 1 ? ? ?
PRD_900110 H1X H1X H 0 1 N N N 0.719 14.792 39.293 6.873 1.782 0.137 H1 GLC 34 1 1 polymer 1 ? ? ?
PRD_900110 H2X H2X H 0 1 N N N 2.048 13.469 40.908 5.772 0.199 1.713 H2 GLC 35 1 1 polymer 1 ? ? ?
PRD_900110 H3X H3X H 0 1 N N N 2.539 16.170 42.351 4.772 -1.172 -0.827 H3 GLC 36 1 1 polymer 1 ? ? ?
PRD_900110 H4X H4X H 0 1 N N N 4.438 14.192 40.866 3.209 0.354 1.308 H4 GLC 37 1 1 polymer 1 ? ? ?
PRD_900110 H5X H5X H 0 1 N N N 3.510 17.099 40.249 3.934 1.111 -1.557 H5 GLC 38 1 1 polymer 1 ? ? ?
PRD_900110 H6X1 1H6X H 0 0 N N N 5.270 15.224 38.491 1.618 1.759 -0.868 H61 GLC 39 1 1 polymer 1 ? ? ?
PRD_900110 H6X2 2H6X H 0 0 N N N 5.969 16.328 39.564 2.300 2.605 0.542 H62 GLC 40 1 1 polymer 1 ? ? ?
PRD_900110 H6 H6 H 0 1 N N N 0.797 17.123 39.434 6.145 1.739 -2.036 HO1 GLC 41 1 1 polymer 1 ? ? ?
PRD_900110 H5 H5 H 0 1 N N N 0.671 13.891 42.720 7.790 -0.324 0.760 HO2 GLC 42 1 1 polymer 1 ? ? ?
PRD_900110 H4 H4 H 0 1 N N N 3.754 14.764 43.709 5.213 -2.512 0.979 HO3 GLC 43 1 1 polymer 1 ? ? ?
PRD_900110 H6X H6X H 0 1 N N N 5.600 17.308 37.466 1.941 3.997 -1.243 HO6 GLC 44 1 1 polymer 1 ? ? ?
PRD_900110 H1Y H1Y H 0 1 N N N 6.098 14.031 41.529 2.484 -1.879 1.282 H1 AC1 45 2 1 polymer 1 ? ? ?
PRD_900110 H3 H3 H 0 1 N N N 5.927 13.976 45.059 2.101 -3.677 -0.219 HO2 AC1 46 2 1 polymer 1 ? ? ?
PRD_900110 H2Y H2Y H 0 1 N N N 7.617 14.010 43.484 0.259 -2.943 0.935 HC2 AC1 47 2 1 polymer 1 ? ? ?
PRD_900110 H4Z H4Z H 0 1 N N N 13.617 18.231 44.018 -7.088 -0.075 -0.060 HC4 AC1 48 2 1 polymer 1 ? ? ?
PRD_900110 H3Y H3Y H 0 1 N N N 6.404 16.773 44.177 0.085 -1.098 -1.493 HCA3 AC1 49 2 1 polymer 1 ? ? ?
PRD_900110 H2 H2 H 0 1 N N N 7.915 16.542 45.890 -0.915 -3.159 -1.655 HOA3 AC1 50 2 1 polymer 1 ? ? ?
PRD_900110 H1 H1 H 0 1 N N N 9.266 15.869 43.350 -1.533 -1.070 1.099 HCA4 AC1 51 2 1 polymer 1 ? ? ?
PRD_900110 H4Y H4Y H 0 1 N N N 8.136 18.392 44.337 -2.011 1.150 0.035 HN4 AC1 52 2 1 polymer 1 ? ? ?
PRD_900110 H5Y H5Y H 0 1 N N N 7.096 17.615 41.941 0.658 0.801 0.088 HCA5 AC1 53 2 1 polymer 1 ? ? ?
PRD_900110 H6Y1 1H6Y H 0 0 N N N 9.950 16.762 41.049 0.271 1.931 2.307 H6A1 AC1 54 2 1 polymer 1 ? ? ?
PRD_900110 H6Y2 2H6Y H 0 0 N N N 8.694 17.618 39.999 -1.112 2.063 1.195 H6A2 AC1 55 2 1 polymer 1 ? ? ?
PRD_900110 H6Y3 3H6Y H 0 0 N N N 9.514 18.333 41.493 -1.157 0.894 2.537 H6A3 AC1 56 2 1 polymer 1 ? ? ?
PRD_900110 H1Z H1Z H 0 1 N N N 9.507 17.742 45.959 -3.108 -1.455 -0.312 HCB1 AC1 57 2 1 polymer 1 ? ? ?
PRD_900110 H2Z H2Z H 0 1 N N N 11.620 19.097 45.795 -3.614 -0.576 -2.499 HCB2 AC1 58 2 1 polymer 1 ? ? ?
PRD_900110 H7 H7 H 0 1 N N N 10.612 21.021 45.041 -4.560 1.510 -2.683 HO2B AC1 59 2 1 polymer 1 ? ? ?
PRD_900110 H3Z H3Z H 0 1 N N N 10.989 19.149 42.783 -6.052 -0.418 -2.367 HCB3 AC1 60 2 1 polymer 1 ? ? ?
PRD_900110 H8 H8 H 0 1 N N N 12.999 20.382 42.750 -6.431 -2.130 -0.882 HOB3 AC1 61 2 1 polymer 1 ? ? ?
PRD_900110 H9 H9 H 0 1 N N N 13.558 16.955 42.033 -6.750 2.186 -0.169 HO4 AC1 62 2 1 polymer 1 ? ? ?
PRD_900110 H6Z H6Z H 0 1 N N N 10.727 15.583 45.216 -3.416 0.218 1.749 HC7 AC1 63 2 1 polymer 1 ? ? ?
PRD_900110 H7Z1 1H7Z H 0 0 N N N 13.454 15.247 43.071 -6.218 1.912 2.021 HC61 AC1 64 2 1 polymer 1 ? ? ?
PRD_900110 H7Z2 2H7Z H 0 0 N N N 12.377 14.461 44.092 -6.632 0.232 2.440 HC62 AC1 65 2 1 polymer 1 ? ? ?
PRD_900110 H7Z H7Z H 0 1 N N N 14.469 14.653 45.066 -5.238 1.214 3.971 HO6B AC1 66 2 1 polymer 1 ? ? ?
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PRD_900110 C1X C2X SING N N 1
PRD_900110 C1X O1X SING N N 2
PRD_900110 C1X O5X SING N N 3
PRD_900110 C1X H1X SING N N 4
PRD_900110 C2X C3X SING N N 5
PRD_900110 C2X O2X SING N N 6
PRD_900110 C2X H2X SING N N 7
PRD_900110 C3X C4X SING N N 8
PRD_900110 C3X O3X SING N N 9
PRD_900110 C3X H3X SING N N 10
PRD_900110 C4X C5X SING N N 11
PRD_900110 C4X O4X SING N N 12
PRD_900110 C4X H4X SING N N 13
PRD_900110 C5X C6X SING N N 14
PRD_900110 C5X O5X SING N N 15
PRD_900110 C5X H5X SING N N 16
PRD_900110 C6X O6X SING N N 17
PRD_900110 C6X H6X1 SING N N 18
PRD_900110 C6X H6X2 SING N N 19
PRD_900110 O1X H6 SING N N 20
PRD_900110 O2X H5 SING N N 21
PRD_900110 O3X H4 SING N N 22
PRD_900110 O4X C1Y SING N N 23
PRD_900110 O6X H6X SING N N 24
PRD_900110 C1Y C2Y SING N N 25
PRD_900110 C1Y O5Y SING N N 26
PRD_900110 C1Y H1Y SING N N 27
PRD_900110 C2Y C3Y SING N N 28
PRD_900110 C2Y O2Y SING N N 29
PRD_900110 C2Y H2Y SING N N 30
PRD_900110 C3Y C4Y SING N N 31
PRD_900110 C3Y O3Y SING N N 32
PRD_900110 C3Y H3Y SING N N 33
PRD_900110 C4Y C5Y SING N N 34
PRD_900110 C4Y N4Y SING N N 35
PRD_900110 C4Y H1 SING N N 36
PRD_900110 C5Y C6Y SING N N 37
PRD_900110 C5Y O5Y SING N N 38
PRD_900110 C5Y H5Y SING N N 39
PRD_900110 C6Y H6Y1 SING N N 40
PRD_900110 C6Y H6Y2 SING N N 41
PRD_900110 C6Y H6Y3 SING N N 42
PRD_900110 O2Y H3 SING N N 43
PRD_900110 O3Y H2 SING N N 44
PRD_900110 N4Y C1Z SING N N 45
PRD_900110 N4Y H4Y SING N N 46
PRD_900110 C1Z C2Z SING N N 47
PRD_900110 C1Z C6Z SING N N 48
PRD_900110 C1Z H1Z SING N N 49
PRD_900110 C2Z O2Z SING N N 50
PRD_900110 C2Z C3Z SING N N 51
PRD_900110 C2Z H2Z SING N N 52
PRD_900110 O2Z H7 SING N N 53
PRD_900110 C3Z O3Z SING N N 54
PRD_900110 C3Z C4Z SING N N 55
PRD_900110 C3Z H3Z SING N N 56
PRD_900110 O3Z H8 SING N N 57
PRD_900110 C4Z O4Z SING N N 58
PRD_900110 C4Z C5Z SING N N 59
PRD_900110 C4Z H4Z SING N N 60
PRD_900110 O4Z H9 SING N N 61
PRD_900110 C5Z C6Z DOUB N N 62
PRD_900110 C5Z C7Z SING N N 63
PRD_900110 C6Z H6Z SING N N 64
PRD_900110 C7Z O7Z SING N N 65
PRD_900110 C7Z H7Z1 SING N N 66
PRD_900110 C7Z H7Z2 SING N N 67
PRD_900110 O7Z H7Z SING N N 68
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PRD_900110 SMILES ACDLabs 10.04 "OC3C(OC2OC(C)C(NC1C=C(CO)C(O)C(O)C1O)C(O)C2O)C(OC(O)C3O)CO"
PRD_900110 SMILES_CANONICAL CACTVS 3.341
;C[C@H]1O[C@H](O[C@H]2[C@H](O)[C@@H](O)[C@@H](O)O[C@@H]2CO)[C@H](O)[C@@H](O)[C@@H]1N[C@H]3C=C(CO)[C@@H](O)[C@H](O)[C@H]3
O
;
PRD_900110 SMILES CACTVS 3.341 "C[CH]1O[CH](O[CH]2[CH](O)[CH](O)[CH](O)O[CH]2CO)[CH](O)[CH](O)[CH]1N[CH]3C=C(CO)[CH](O)[CH](O)[CH]3O"
PRD_900110 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0
;C[C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O[C@@H]2[C@H](O[C@@H]([C@@H]([C@H]2O)O)O)CO)O)O)N[C@H]3C=C([C@H]([C@@H]([C@H]3O)O)O
)CO
;
PRD_900110 SMILES "OpenEye OEToolkits" 1.5.0 "CC1C(C(C(C(O1)OC2C(OC(C(C2O)O)O)CO)O)O)NC3C=C(C(C(C3O)O)O)CO"
PRD_900110 InChI InChI 1.03
;InChI=1S/C19H33NO13/c1-5-9(20-7-2-6(3-21)10(23)13(26)11(7)24)12(25)16(29)19(31-5)33-17-8(4-22)32-18(30)15(28)14(17)27/h
2,5,7-30H,3-4H2,1H3/t5-,7+,8-,9-,10-,11+,12+,13+,14-,15-,16-,17-,18+,19-/m1/s1
;
PRD_900110 InChIKey InChI 1.03 SNMISNLUIRCRQE-SFSRYZOZSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PRD_900110 "SYSTEMATIC NAME" ACDLabs 10.04
;4-O-(4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranosyl)-
alpha-D-glucopyranose
;
PRD_900110 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0
;(2S,3R,4R,5S,6R)-5-[(2R,3R,4S,5S,6R)-3,4-dihydroxy-6-methyl-5-[[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)-1-cycl
ohex-2-enyl]amino]oxan-2-yl]oxy-6-(hydroxymethyl)oxane-2,3,4-triol
;
#