data_PRDCC_900112
#
_chem_comp.id PRD_900112
_chem_comp.name 3-O-alpha-D-mannopyranosyl-alpha-D-mannopyranose
_chem_comp.type saccharide
_chem_comp.formula "C12 H22 O11"
_chem_comp.pdbx_release_status REF_ONLY
_chem_comp.formula_weight 342.296
_chem_comp.pdbx_type ?
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge ?
_chem_comp.pdbx_initial_date ?
_chem_comp.pdbx_modified_date ?
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ?
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag ?
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag ?
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_pcm ?
_chem_comp.pdbx_processing_site ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_residue_numbering
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_polymer_type
_chem_comp_atom.pdbx_ref_id
_chem_comp_atom.pdbx_component_id
_chem_comp_atom.pdbx_ordinal
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
PRD_900112 "C1'" C7 C 0 1 N N S 21.135 -39.263 5.234 -2.411 1.666 -0.196 MAN 1 C1 polymer 1 1 1 ? ? ?
PRD_900112 "C2'" C8 C 0 1 N N S 20.704 -38.726 3.846 -1.036 1.060 0.100 MAN 1 C2 polymer 1 1 2 ? ? ?
PRD_900112 "C3'" C9 C 0 1 N N S 19.304 -38.077 3.983 -1.014 -0.395 -0.377 MAN 1 C3 polymer 1 1 3 ? ? ?
PRD_900112 "C4'" C10 C 0 1 N N R 18.325 -39.148 4.498 -2.147 -1.163 0.309 MAN 1 C4 polymer 1 1 4 ? ? ?
PRD_900112 "C5'" C11 C 0 1 N N R 18.833 -39.665 5.864 -3.479 -0.472 0.005 MAN 1 C5 polymer 1 1 5 ? ? ?
PRD_900112 "C6'" C12 C 0 1 N N N 17.868 -40.742 6.375 -4.610 -1.198 0.736 MAN 1 C6 polymer 1 1 6 ? ? ?
PRD_900112 "O1'" O6 O 0 1 N N N 21.223 -38.186 6.177 -2.636 1.669 -1.607 MAN 1 O1 polymer 1 1 7 ? ? ?
PRD_900112 "O2'" O7 O 0 1 N N N 20.636 -39.807 2.910 -0.787 1.105 1.506 MAN 1 O2 polymer 1 1 8 ? ? ?
PRD_900112 "O3'" O8 O 0 1 N N N 18.844 -37.596 2.705 0.240 -0.990 -0.039 MAN 1 O3 polymer 1 1 9 ? ? ?
PRD_900112 "O4'" O9 O 0 1 N N N 17.027 -38.563 4.642 -2.182 -2.504 -0.183 MAN 1 O4 polymer 1 1 10 ? ? ?
PRD_900112 "O5'" O10 O 0 1 N N N 20.164 -40.253 5.711 -3.421 0.886 0.446 MAN 1 O5 polymer 1 1 11 ? ? ?
PRD_900112 "O6'" O11 O 0 1 N N N 18.324 -41.229 7.641 -5.864 -0.626 0.361 MAN 1 O6 polymer 1 1 12 ? ? ?
PRD_900112 C1 C1 C 0 1 N N R 19.217 -36.215 2.526 1.242 -0.849 -1.048 MAN 2 C1 polymer 1 1 13 ? ? ?
PRD_900112 C2 C2 C 0 1 N N S 18.227 -35.564 1.523 2.448 -1.724 -0.698 MAN 2 C2 polymer 1 1 14 ? ? ?
PRD_900112 C3 C3 C 0 1 N N S 18.342 -36.331 0.180 3.050 -1.243 0.626 MAN 2 C3 polymer 1 1 15 ? ? ?
PRD_900112 C4 C4 C 0 1 N N S 19.793 -36.241 -0.319 3.425 0.236 0.496 MAN 2 C4 polymer 1 1 16 ? ? ?
PRD_900112 C5 C5 C 0 1 N N R 20.727 -36.854 0.748 2.181 1.036 0.099 MAN 2 C5 polymer 1 1 17 ? ? ?
PRD_900112 C6 C6 C 0 1 N N N 22.179 -36.740 0.264 2.560 2.506 -0.091 MAN 2 C6 polymer 1 1 18 ? ? ?
PRD_900112 O2 O1 O 0 1 N N N 18.580 -34.186 1.334 3.428 -1.625 -1.733 MAN 2 O2 polymer 1 1 19 ? ? ?
PRD_900112 O3 O2 O 0 1 N N N 17.455 -35.755 -0.791 4.220 -2.008 0.924 MAN 2 O3 polymer 1 1 20 ? ? ?
PRD_900112 O4 O3 O 0 1 N N N 19.918 -36.965 -1.550 3.921 0.715 1.748 MAN 2 O4 polymer 1 1 21 ? ? ?
PRD_900112 O5 O4 O 0 1 N N N 20.586 -36.131 2.010 1.653 0.518 -1.123 MAN 2 O5 polymer 1 1 22 ? ? ?
PRD_900112 O6 O5 O 0 1 N N N 23.061 -37.296 1.239 1.381 3.272 -0.347 MAN 2 O6 polymer 1 1 23 ? ? ?
PRD_900112 "H1'" H12 H 0 1 N N N 22.119 -39.743 5.126 -2.446 2.688 0.180 MAN 1 H1 polymer 1 1 24 ? ? ?
PRD_900112 "H2'" H13 H 0 1 N N N 21.425 -37.965 3.513 -0.267 1.628 -0.424 MAN 1 H2 polymer 1 1 25 ? ? ?
PRD_900112 "H3'" H14 H 0 1 N N N 19.357 -37.254 4.711 -1.153 -0.426 -1.458 MAN 1 H3 polymer 1 1 26 ? ? ?
PRD_900112 "H4'" H15 H 0 1 N N N 18.297 -39.985 3.785 -1.980 -1.175 1.386 MAN 1 H4 polymer 1 1 27 ? ? ?
PRD_900112 "H5'" H16 H 0 1 N N N 18.862 -38.830 6.580 -3.665 -0.498 -1.069 MAN 1 H5 polymer 1 1 28 ? ? ?
PRD_900112 "H6'" H17 H 0 1 N N N 16.863 -40.310 6.489 -4.597 -2.254 0.467 MAN 1 H61 polymer 1 1 29 ? ? ?
PRD_900112 "H6'A" H18 H 0 1 N N N 17.830 -41.572 5.655 -4.471 -1.096 1.813 MAN 1 H62 polymer 1 1 30 ? ? ?
PRD_900112 "HO1'" H19 H 0 1 N N N 21.852 -37.545 5.868 -3.490 2.039 -1.868 MAN 1 HO1 polymer 1 1 31 ? ? ?
PRD_900112 "HO2'" H20 H 0 1 N N N 20.372 -39.475 2.060 -0.791 1.998 1.878 MAN 1 HO2 polymer 1 1 32 ? ? ?
PRD_900112 "HO4'" H21 H 0 1 N N N 16.417 -39.219 4.960 -2.878 -3.049 0.209 MAN 1 HO4 polymer 1 1 33 ? ? ?
PRD_900112 "HO6'" H22 H 0 1 N N N 17.727 -41.896 7.958 -6.628 -1.039 0.788 MAN 1 HO6 polymer 1 1 34 ? ? ?
PRD_900112 H1 H1 H 0 1 N N N 19.148 -35.679 3.484 0.835 -1.159 -2.011 MAN 2 H1 polymer 1 1 35 ? ? ?
PRD_900112 H2 H2 H 0 1 N N N 17.202 -35.658 1.910 2.128 -2.761 -0.596 MAN 2 H2 polymer 1 1 36 ? ? ?
PRD_900112 H3 H3 H 0 1 N N N 18.088 -37.387 0.352 2.320 -1.367 1.426 MAN 2 H3 polymer 1 1 37 ? ? ?
PRD_900112 H4 H4 H 0 1 N N N 20.059 -35.184 -0.464 4.193 0.352 -0.269 MAN 2 H4 polymer 1 1 38 ? ? ?
PRD_900112 H5 H5 H 0 1 N N N 20.472 -37.915 0.885 1.430 0.953 0.884 MAN 2 H5 polymer 1 1 39 ? ? ?
PRD_900112 H6 H6 H 0 1 N N N 22.292 -37.287 -0.684 3.045 2.877 0.812 MAN 2 H61 polymer 1 1 40 ? ? ?
PRD_900112 H6A H7 H 0 1 N N N 22.429 -35.680 0.108 3.244 2.599 -0.935 MAN 2 H62 polymer 1 1 41 ? ? ?
PRD_900112 HO2 H8 H 0 1 N N N 17.976 -33.785 0.720 3.112 -1.909 -2.602 MAN 2 HO2 polymer 1 1 42 ? ? ?
PRD_900112 HO3 H9 H 0 1 N N N 17.531 -36.229 -1.611 4.057 -2.957 1.014 MAN 2 HO3 polymer 1 1 43 ? ? ?
PRD_900112 HO4 H10 H 0 1 N N N 20.814 -36.911 -1.860 4.707 0.249 2.063 MAN 2 HO4 polymer 1 1 44 ? ? ?
PRD_900112 HO6 H11 H 0 1 N N N 23.958 -37.223 0.934 1.546 4.216 -0.478 MAN 2 HO6 polymer 1 1 45 ? ? ?
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PRD_900112 C1 "O3'" SING N N 1
PRD_900112 C1 C2 SING N N 2
PRD_900112 C1 O5 SING N N 3
PRD_900112 C2 C3 SING N N 4
PRD_900112 C2 O2 SING N N 5
PRD_900112 C3 O3 SING N N 6
PRD_900112 C3 C4 SING N N 7
PRD_900112 C4 O4 SING N N 8
PRD_900112 C4 C5 SING N N 9
PRD_900112 C5 C6 SING N N 10
PRD_900112 C5 O5 SING N N 11
PRD_900112 C6 O6 SING N N 12
PRD_900112 "C1'" "O5'" SING N N 13
PRD_900112 "C1'" "C2'" SING N N 14
PRD_900112 "C1'" "O1'" SING N N 15
PRD_900112 "C2'" "O2'" SING N N 16
PRD_900112 "C2'" "C3'" SING N N 17
PRD_900112 "C3'" "O3'" SING N N 18
PRD_900112 "C3'" "C4'" SING N N 19
PRD_900112 "C4'" "O4'" SING N N 20
PRD_900112 "C4'" "C5'" SING N N 21
PRD_900112 "C5'" "O5'" SING N N 22
PRD_900112 "C5'" "C6'" SING N N 23
PRD_900112 "C6'" "O6'" SING N N 24
PRD_900112 C1 H1 SING N N 25
PRD_900112 C2 H2 SING N N 26
PRD_900112 C3 H3 SING N N 27
PRD_900112 C4 H4 SING N N 28
PRD_900112 C5 H5 SING N N 29
PRD_900112 C6 H6 SING N N 30
PRD_900112 C6 H6A SING N N 31
PRD_900112 O2 HO2 SING N N 32
PRD_900112 O3 HO3 SING N N 33
PRD_900112 O4 HO4 SING N N 34
PRD_900112 O6 HO6 SING N N 35
PRD_900112 "C1'" "H1'" SING N N 36
PRD_900112 "C2'" "H2'" SING N N 37
PRD_900112 "C3'" "H3'" SING N N 38
PRD_900112 "C4'" "H4'" SING N N 39
PRD_900112 "C5'" "H5'" SING N N 40
PRD_900112 "C6'" "H6'" SING N N 41
PRD_900112 "C6'" "H6'A" SING N N 42
PRD_900112 "O1'" "HO1'" SING N N 43
PRD_900112 "O2'" "HO2'" SING N N 44
PRD_900112 "O4'" "HO4'" SING N N 45
PRD_900112 "O6'" "HO6'" SING N N 46
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PRD_900112 InChI InChI 1.06 "InChI=1S/C12H22O11/c13-1-3-5(15)7(17)8(18)12(22-3)23-10-6(16)4(2-14)21-11(20)9(10)19/h3-20H,1-2H2/t3-,4-,5-,6-,7+,8+,9+,10+,11+,12-/m1/s1"
PRD_900112 InChIKey InChI 1.06 QIGJYVCQYDKYDW-LBGGPIGOSA-N
PRD_900112 SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@H](O[C@@H]2[C@H](O)[C@@H](O)O[C@H](CO)[C@H]2O)[C@@H](O)[C@@H](O)[C@@H]1O"
PRD_900112 SMILES CACTVS 3.385 "OC[CH]1O[CH](O[CH]2[CH](O)[CH](O)O[CH](CO)[CH]2O)[CH](O)[CH](O)[CH]1O"
PRD_900112 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)O)O)O[C@@H]2[C@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O)O"
PRD_900112 SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)O)O)OC2C(C(C(C(O2)CO)O)O)O)O)O"
#
_pdbx_chem_comp_identifier.comp_id PRD_900112
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
;(2~{S},3~{S},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-4-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxida
nyl)oxan-2-yl]oxy-oxane-2,3,5-triol
;
#