data_PRDCC_900119 # _chem_comp.id PRD_900119 _chem_comp.name "Lewis X antigen, beta anomer" _chem_comp.type saccharide _chem_comp.formula "C20 H35 N O15" _chem_comp.pdbx_release_status REF_ONLY _chem_comp.formula_weight 529.490 _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_900119 C1 C1 C 0 1 N N R 57.278 21.894 15.780 3.524 1.881 -0.308 NAG 1 C1 polymer 1 1 1 ? ? ? PRD_900119 C2 C2 C 0 1 N N R 55.928 21.178 15.817 2.916 0.570 0.199 NAG 1 C2 polymer 1 1 2 ? ? ? PRD_900119 C3 C3 C 0 1 N N R 55.018 21.844 16.850 1.536 0.378 -0.437 NAG 1 C3 polymer 1 1 3 ? ? ? PRD_900119 C4 C4 C 0 1 N N S 55.719 21.857 18.210 0.660 1.591 -0.107 NAG 1 C4 polymer 1 1 4 ? ? ? PRD_900119 C5 C5 C 0 1 N N R 57.085 22.536 18.082 1.356 2.862 -0.602 NAG 1 C5 polymer 1 1 5 ? ? ? PRD_900119 C6 C6 C 0 1 N N N 57.869 22.494 19.377 0.516 4.083 -0.223 NAG 1 C6 polymer 1 1 6 ? ? ? PRD_900119 C7 C7 C 0 1 N N N 54.758 20.122 14.001 4.829 -0.881 0.614 NAG 1 C7 polymer 1 1 7 ? ? ? PRD_900119 C8 C8 C 0 1 N N N 54.545 20.088 12.496 5.724 -2.032 0.233 NAG 1 C8 polymer 1 1 8 ? ? ? PRD_900119 N1 N1 N 0 1 N N N 55.317 21.217 14.505 3.786 -0.549 -0.172 NAG 1 N2 polymer 1 1 9 ? ? ? PRD_900119 O1 O1 O 0 1 N Y N 58.118 21.234 14.899 4.788 2.095 0.324 NAG 1 O1 polymer 1 1 10 ? ? ? PRD_900119 O2 O2 O 0 1 N N N 53.780 21.116 16.947 0.929 -0.806 0.086 NAG 1 O3 polymer 1 1 11 ? ? ? PRD_900119 O3 O3 O 0 1 N N N 54.914 22.561 19.170 -0.606 1.457 -0.756 NAG 1 O4 polymer 1 1 12 ? ? ? PRD_900119 O4 O4 O 0 1 N N N 57.882 21.860 17.080 2.646 2.964 0.004 NAG 1 O5 polymer 1 1 13 ? ? ? PRD_900119 O5 O5 O 0 1 N N N 58.013 21.159 19.841 1.100 5.258 -0.790 NAG 1 O6 polymer 1 1 14 ? ? ? PRD_900119 O6 O6 O 0 1 N N N 54.412 19.161 14.697 5.048 -0.253 1.628 NAG 1 O7 polymer 1 1 15 ? ? ? PRD_900119 C9 C9 C 0 1 N N R 52.671 21.757 16.385 1.222 -1.988 -0.661 FUC 2 C1 polymer 1 1 16 ? ? ? PRD_900119 C10 C10 C 0 1 N N S 51.543 20.742 16.162 0.629 -3.204 0.054 FUC 2 C2 polymer 1 1 17 ? ? ? PRD_900119 C11 C11 C 0 1 N N R 50.942 20.318 17.499 -0.895 -3.058 0.115 FUC 2 C3 polymer 1 1 18 ? ? ? PRD_900119 C12 C12 C 0 1 N N S 50.490 21.548 18.284 -1.439 -2.899 -1.309 FUC 2 C4 polymer 1 1 19 ? ? ? PRD_900119 C13 C13 C 0 1 N N S 51.669 22.507 18.465 -0.765 -1.694 -1.971 FUC 2 C5 polymer 1 1 20 ? ? ? PRD_900119 C14 C14 C 0 1 N N N 51.263 23.795 19.167 -1.259 -1.564 -3.414 FUC 2 C6 polymer 1 1 21 ? ? ? PRD_900119 O7 O7 O 0 1 N N N 52.053 19.597 15.494 1.154 -3.281 1.381 FUC 2 O2 polymer 1 1 22 ? ? ? PRD_900119 O8 O8 O 0 1 N N N 49.842 19.451 17.276 -1.463 -4.224 0.715 FUC 2 O3 polymer 1 1 23 ? ? ? PRD_900119 O9 O9 O 0 1 N N N 49.445 22.205 17.583 -1.156 -4.079 -2.063 FUC 2 O4 polymer 1 1 24 ? ? ? PRD_900119 O10 O10 O 0 1 N N N 52.215 22.868 17.174 0.651 -1.880 -1.967 FUC 2 O5 polymer 1 1 25 ? ? ? PRD_900119 C15 C15 C 0 1 N N R 54.744 21.945 20.398 -1.726 1.616 0.118 GAL 3 C1 polymer 1 1 26 ? ? ? PRD_900119 C16 C16 C 0 1 N N R 54.230 22.968 21.406 -3.020 1.582 -0.700 GAL 3 C2 polymer 1 1 27 ? ? ? PRD_900119 C17 C17 C 0 1 N N S 53.925 22.294 22.746 -4.217 1.693 0.249 GAL 3 C3 polymer 1 1 28 ? ? ? PRD_900119 C18 C18 C 0 1 N N R 53.009 21.081 22.551 -4.148 0.558 1.275 GAL 3 C4 polymer 1 1 29 ? ? ? PRD_900119 C19 C19 C 0 1 N N R 53.573 20.148 21.468 -2.811 0.631 2.017 GAL 3 C5 polymer 1 1 30 ? ? ? PRD_900119 C20 C20 C 0 1 N N N 52.632 19.003 21.144 -2.709 -0.535 3.002 GAL 3 C6 polymer 1 1 31 ? ? ? PRD_900119 O11 O11 O 0 1 N N N 55.211 23.974 21.598 -3.034 2.678 -1.617 GAL 3 O2 polymer 1 1 32 ? ? ? PRD_900119 O12 O12 O 0 1 N N N 53.288 23.228 23.600 -5.431 1.588 -0.498 GAL 3 O3 polymer 1 1 33 ? ? ? PRD_900119 O13 O13 O 0 1 N N N 51.713 21.519 22.182 -4.254 -0.700 0.605 GAL 3 O4 polymer 1 1 34 ? ? ? PRD_900119 O14 O14 O 0 1 N N N 53.791 20.881 20.241 -1.740 0.553 1.074 GAL 3 O5 polymer 1 1 35 ? ? ? PRD_900119 O15 O15 O 0 1 N N N 53.294 17.990 20.399 -1.515 -0.402 3.776 GAL 3 O6 polymer 1 1 36 ? ? ? PRD_900119 H1 H1 H 0 1 N N N 57.119 22.935 15.464 3.662 1.824 -1.387 NAG 1 H1 polymer 1 1 37 ? ? ? PRD_900119 H2 H2 H 0 1 N N N 56.093 20.133 16.118 2.815 0.611 1.283 NAG 1 H2 polymer 1 1 38 ? ? ? PRD_900119 H3 H3 H 0 1 N N N 54.824 22.881 16.539 1.641 0.288 -1.518 NAG 1 H3 polymer 1 1 39 ? ? ? PRD_900119 H4 H4 H 0 1 N N N 55.871 20.818 18.538 0.514 1.652 0.971 NAG 1 H4 polymer 1 1 40 ? ? ? PRD_900119 H5 H5 H 0 1 N N N 56.932 23.586 17.791 1.465 2.818 -1.685 NAG 1 H5 polymer 1 1 41 ? ? ? PRD_900119 H6 H6 H 0 1 N N N 58.866 22.926 19.208 -0.497 3.961 -0.605 NAG 1 H61 polymer 1 1 42 ? ? ? PRD_900119 H7 H7 H 0 1 N N N 57.338 23.084 20.138 0.486 4.181 0.863 NAG 1 H62 polymer 1 1 43 ? ? ? PRD_900119 H8 H8 H 0 1 N N N 54.074 19.135 12.213 5.373 -2.470 -0.701 NAG 1 H81 polymer 1 1 44 ? ? ? PRD_900119 H9 H9 H 0 1 N N N 53.892 20.922 12.199 6.744 -1.671 0.105 NAG 1 H82 polymer 1 1 45 ? ? ? PRD_900119 H10 H10 H 0 1 N N N 55.515 20.183 11.986 5.701 -2.786 1.020 NAG 1 H83 polymer 1 1 46 ? ? ? PRD_900119 H11 H11 H 0 1 N N N 55.316 22.067 13.979 3.611 -1.051 -0.983 NAG 1 HN2 polymer 1 1 47 ? ? ? PRD_900119 H12 H12 H 0 1 N Y N 58.959 21.675 14.872 5.232 2.909 0.050 NAG 1 HO1 polymer 1 1 48 ? ? ? PRD_900119 H13 H13 H 0 1 N Y N 58.507 21.157 20.653 0.619 6.072 -0.590 NAG 1 HO6 polymer 1 1 49 ? ? ? PRD_900119 H14 H14 H 0 1 N N N 52.955 22.139 15.393 2.302 -2.106 -0.745 FUC 2 H1 polymer 1 1 50 ? ? ? PRD_900119 H15 H15 H 0 1 N N N 50.757 21.217 15.556 0.886 -4.111 -0.494 FUC 2 H2 polymer 1 1 51 ? ? ? PRD_900119 H16 H16 H 0 1 N N N 51.717 19.799 18.081 -1.154 -2.179 0.705 FUC 2 H3 polymer 1 1 52 ? ? ? PRD_900119 H17 H17 H 0 1 N N N 50.140 21.226 19.276 -2.516 -2.739 -1.271 FUC 2 H4 polymer 1 1 53 ? ? ? PRD_900119 H18 H18 H 0 1 N N N 52.441 22.005 19.067 -1.015 -0.788 -1.418 FUC 2 H5 polymer 1 1 54 ? ? ? PRD_900119 H19 H19 H 0 1 N N N 52.142 24.448 19.273 -2.339 -1.423 -3.417 FUC 2 H61 polymer 1 1 55 ? ? ? PRD_900119 H20 H20 H 0 1 N N N 50.493 24.309 18.573 -0.779 -0.706 -3.886 FUC 2 H62 polymer 1 1 56 ? ? ? PRD_900119 H21 H21 H 0 1 N N N 50.860 23.558 20.163 -1.008 -2.469 -3.967 FUC 2 H63 polymer 1 1 57 ? ? ? PRD_900119 H22 H22 H 0 1 N Y N 52.979 19.718 15.319 2.116 -3.370 1.418 FUC 2 HO2 polymer 1 1 58 ? ? ? PRD_900119 H23 H23 H 0 1 N Y N 49.470 19.189 18.110 -1.157 -4.390 1.618 FUC 2 HO3 polymer 1 1 59 ? ? ? PRD_900119 H24 H24 H 0 1 N Y N 49.166 22.969 18.073 -1.472 -4.047 -2.976 FUC 2 HO4 polymer 1 1 60 ? ? ? PRD_900119 H25 H25 H 0 1 N N N 55.699 21.540 20.764 -1.649 2.571 0.637 GAL 3 H1 polymer 1 1 61 ? ? ? PRD_900119 H26 H26 H 0 1 N N N 53.302 23.412 21.016 -3.078 0.643 -1.251 GAL 3 H2 polymer 1 1 62 ? ? ? PRD_900119 H27 H27 H 0 1 N N N 54.871 21.953 23.192 -4.187 2.653 0.765 GAL 3 H3 polymer 1 1 63 ? ? ? PRD_900119 H28 H28 H 0 1 N N N 52.962 20.524 23.499 -4.966 0.661 1.988 GAL 3 H4 polymer 1 1 64 ? ? ? PRD_900119 H29 H29 H 0 1 N N N 54.526 19.732 21.827 -2.748 1.574 2.561 GAL 3 H5 polymer 1 1 65 ? ? ? PRD_900119 H30 H30 H 0 1 N N N 52.256 18.570 22.083 -3.574 -0.527 3.665 GAL 3 H61 polymer 1 1 66 ? ? ? PRD_900119 H31 H31 H 0 1 N N N 51.787 19.388 20.554 -2.681 -1.475 2.451 GAL 3 H62 polymer 1 1 67 ? ? ? PRD_900119 H32 H32 H 0 1 N Y N 54.892 24.612 22.226 -2.300 2.674 -2.246 GAL 3 HO2 polymer 1 1 68 ? ? ? PRD_900119 H33 H33 H 0 1 N Y N 53.096 22.816 24.434 -5.538 2.273 -1.173 GAL 3 HO3 polymer 1 1 69 ? ? ? PRD_900119 H34 H34 H 0 1 N Y N 51.146 20.766 22.061 -5.077 -0.813 0.109 GAL 3 HO4 polymer 1 1 70 ? ? ? PRD_900119 H35 H35 H 0 1 N Y N 52.685 17.286 20.209 -1.384 -1.108 4.423 GAL 3 HO6 polymer 1 1 71 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_900119 C1 C2 SING N N 1 PRD_900119 C1 O1 SING N N 2 PRD_900119 C1 O4 SING N N 3 PRD_900119 C1 H1 SING N N 4 PRD_900119 C2 C3 SING N N 5 PRD_900119 C2 N1 SING N N 6 PRD_900119 C2 H2 SING N N 7 PRD_900119 C3 C4 SING N N 8 PRD_900119 C3 O2 SING N N 9 PRD_900119 C3 H3 SING N N 10 PRD_900119 C4 C5 SING N N 11 PRD_900119 C4 O3 SING N N 12 PRD_900119 C4 H4 SING N N 13 PRD_900119 C5 C6 SING N N 14 PRD_900119 C5 O4 SING N N 15 PRD_900119 C5 H5 SING N N 16 PRD_900119 C6 O5 SING N N 17 PRD_900119 C6 H6 SING N N 18 PRD_900119 C6 H7 SING N N 19 PRD_900119 C7 C8 SING N N 20 PRD_900119 C7 N1 SING N N 21 PRD_900119 C7 O6 DOUB N N 22 PRD_900119 C8 H8 SING N N 23 PRD_900119 C8 H9 SING N N 24 PRD_900119 C8 H10 SING N N 25 PRD_900119 N1 H11 SING N N 26 PRD_900119 O1 H12 SING N N 27 PRD_900119 O5 H13 SING N N 28 PRD_900119 C9 C10 SING N N 29 PRD_900119 C9 O10 SING N N 30 PRD_900119 C9 H14 SING N N 31 PRD_900119 C10 C11 SING N N 32 PRD_900119 C10 O7 SING N N 33 PRD_900119 C10 H15 SING N N 34 PRD_900119 C11 C12 SING N N 35 PRD_900119 C11 O8 SING N N 36 PRD_900119 C11 H16 SING N N 37 PRD_900119 C12 C13 SING N N 38 PRD_900119 C12 O9 SING N N 39 PRD_900119 C12 H17 SING N N 40 PRD_900119 C13 C14 SING N N 41 PRD_900119 C13 O10 SING N N 42 PRD_900119 C13 H18 SING N N 43 PRD_900119 C14 H19 SING N N 44 PRD_900119 C14 H20 SING N N 45 PRD_900119 C14 H21 SING N N 46 PRD_900119 O7 H22 SING N N 47 PRD_900119 O8 H23 SING N N 48 PRD_900119 O9 H24 SING N N 49 PRD_900119 C15 C16 SING N N 50 PRD_900119 C15 O14 SING N N 51 PRD_900119 C15 H25 SING N N 52 PRD_900119 C16 C17 SING N N 53 PRD_900119 C16 O11 SING N N 54 PRD_900119 C16 H26 SING N N 55 PRD_900119 C17 C18 SING N N 56 PRD_900119 C17 O12 SING N N 57 PRD_900119 C17 H27 SING N N 58 PRD_900119 C18 C19 SING N N 59 PRD_900119 C18 O13 SING N N 60 PRD_900119 C18 H28 SING N N 61 PRD_900119 C19 C20 SING N N 62 PRD_900119 C19 O14 SING N N 63 PRD_900119 C19 H29 SING N N 64 PRD_900119 C20 O15 SING N N 65 PRD_900119 C20 H30 SING N N 66 PRD_900119 C20 H31 SING N N 67 PRD_900119 O11 H32 SING N N 68 PRD_900119 O12 H33 SING N N 69 PRD_900119 O13 H34 SING N N 70 PRD_900119 O15 H35 SING N N 71 PRD_900119 O2 C9 SING N N 72 PRD_900119 O3 C15 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_900119 InChI InChI 1.06 "InChI=1S/C20H35NO15/c1-5-10(25)12(27)14(29)19(32-5)36-17-9(21-6(2)24)18(31)33-8(4-23)16(17)35-20-15(30)13(28)11(26)7(3-22)34-20/h5,7-20,22-23,25-31H,3-4H2,1-2H3,(H,21,24)/t5-,7+,8+,9+,10+,11-,12+,13-,14-,15+,16+,17+,18+,19-,20-/m0/s1" PRD_900119 InChIKey InChI 1.06 HBBOZFUQJDYASD-LPHOMBEVSA-N PRD_900119 SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1O[C@@H](O[C@@H]2[C@@H](NC(C)=O)[C@H](O)O[C@H](CO)[C@H]2O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)[C@@H](O)[C@H](O)[C@@H]1O" PRD_900119 SMILES CACTVS 3.385 "C[CH]1O[CH](O[CH]2[CH](NC(C)=O)[CH](O)O[CH](CO)[CH]2O[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)[CH](O)[CH](O)[CH]1O" PRD_900119 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O[C@@H]2[C@H]([C@@H](O[C@@H]([C@H]2O[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O)O)CO)O)NC(=O)C)O)O)O" PRD_900119 SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C(C(C(O1)OC2C(C(OC(C2OC3C(C(C(C(O3)CO)O)O)O)CO)O)NC(=O)C)O)O)O" # _pdbx_chem_comp_identifier.comp_id PRD_900119 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier ;~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-5-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris (oxidanyl)oxan-2-yl]oxy-4-[(2~{S},3~{S},4~{R},5~{S},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-oxidanyl-oxan-3- yl]ethanamide ; #