data_PRDCC_900120
#
_chem_comp.id PRD_900120
_chem_comp.name "Lewis X antigen, alpha anomer"
_chem_comp.type saccharide
_chem_comp.formula "C20 H35 N O15"
_chem_comp.pdbx_release_status REF_ONLY
_chem_comp.formula_weight 529.490
_chem_comp.pdbx_type ?
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge ?
_chem_comp.pdbx_initial_date ?
_chem_comp.pdbx_modified_date ?
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ?
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag ?
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag ?
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_pcm ?
_chem_comp.pdbx_processing_site ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_residue_numbering
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_polymer_type
_chem_comp_atom.pdbx_ref_id
_chem_comp_atom.pdbx_component_id
_chem_comp_atom.pdbx_ordinal
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
PRD_900120 C1 C1 C 0 1 N N S 95.188 46.353 55.934 -3.489 2.028 0.021 NDG 1 C1 polymer 1 1 1 ? ? ?
PRD_900120 C2 C2 C 0 1 N N R 95.752 45.122 56.653 -2.911 0.677 -0.409 NDG 1 C2 polymer 1 1 2 ? ? ?
PRD_900120 C3 C3 C 0 1 N N R 96.642 44.310 55.701 -1.567 0.459 0.292 NDG 1 C3 polymer 1 1 3 ? ? ?
PRD_900120 C4 C4 C 0 1 N N S 95.872 43.971 54.414 -0.632 1.625 -0.046 NDG 1 C4 polymer 1 1 4 ? ? ?
PRD_900120 C5 C5 C 0 1 N N R 95.305 45.261 53.792 -1.298 2.939 0.370 NDG 1 C5 polymer 1 1 5 ? ? ?
PRD_900120 C6 C6 C 0 1 N N N 94.453 45.009 52.559 -0.397 4.113 -0.019 NDG 1 C6 polymer 1 1 6 ? ? ?
PRD_900120 C7 C7 C 0 1 N N N 96.083 45.274 59.034 -4.860 -0.717 -0.851 NDG 1 C7 polymer 1 1 7 ? ? ?
PRD_900120 C8 C8 C 0 1 N N N 96.883 45.838 60.198 -5.814 -1.818 -0.466 NDG 1 C8 polymer 1 1 8 ? ? ?
PRD_900120 O1 O1 O 0 1 N N N 94.471 45.957 54.750 -2.557 3.065 -0.294 NDG 1 O5 polymer 1 1 9 ? ? ?
PRD_900120 O2 O2 O 0 1 N N N 97.071 43.093 56.351 -0.985 -0.766 -0.160 NDG 1 O3 polymer 1 1 10 ? ? ?
PRD_900120 O3 O3 O 0 1 N N N 96.758 43.320 53.473 0.600 1.469 0.660 NDG 1 O4 polymer 1 1 11 ? ? ?
PRD_900120 O4 O4 O 0 1 N N N 93.663 43.836 52.706 -0.958 5.330 0.479 NDG 1 O6 polymer 1 1 12 ? ? ?
PRD_900120 O5 O5 O 0 1 N N N 95.077 44.597 59.250 -5.012 -0.121 -1.897 NDG 1 O7 polymer 1 1 13 ? ? ?
PRD_900120 N1 N1 N 0 1 N N N 96.521 45.545 57.808 -3.838 -0.393 -0.034 NDG 1 N2 polymer 1 1 14 ? ? ?
PRD_900120 O6 O6 O 0 1 N Y N 96.225 47.195 55.558 -3.731 2.016 1.429 NDG 1 O1 polymer 1 1 15 ? ? ?
PRD_900120 C9 C9 C 0 1 N N R 98.291 43.168 57.038 -1.355 -1.906 0.618 FUC 2 C1 polymer 1 1 16 ? ? ?
PRD_900120 C10 C10 C 0 1 N N S 98.426 41.982 58.008 -0.780 -3.171 -0.025 FUC 2 C2 polymer 1 1 17 ? ? ?
PRD_900120 C11 C11 C 0 1 N N R 98.682 40.677 57.251 0.749 -3.084 -0.025 FUC 2 C3 polymer 1 1 18 ? ? ?
PRD_900120 C12 C12 C 0 1 N N S 99.866 40.840 56.308 1.239 -2.889 1.413 FUC 2 C4 polymer 1 1 19 ? ? ?
PRD_900120 C13 C13 C 0 1 N N S 99.630 42.036 55.378 0.587 -1.635 2.000 FUC 2 C5 polymer 1 1 20 ? ? ?
PRD_900120 C14 C14 C 0 1 N N N 100.797 42.308 54.448 1.025 -1.466 3.456 FUC 2 C6 polymer 1 1 21 ? ? ?
PRD_900120 O7 O7 O 0 1 N N N 97.238 41.856 58.778 -1.253 -3.280 -1.369 FUC 2 O2 polymer 1 1 22 ? ? ?
PRD_900120 O8 O8 O 0 1 N N N 98.969 39.646 58.181 1.296 -4.292 -0.557 FUC 2 O3 polymer 1 1 23 ? ? ?
PRD_900120 O9 O9 O 0 1 N N N 101.043 41.045 57.072 0.880 -4.027 2.198 FUC 2 O4 polymer 1 1 24 ? ? ?
PRD_900120 O10 O10 O 0 1 N N N 99.415 43.231 56.159 -0.835 -1.768 1.942 FUC 2 O5 polymer 1 1 25 ? ? ?
PRD_900120 C15 C15 C 0 1 N N R 96.421 42.035 53.064 1.760 1.552 -0.169 GAL 3 C1 polymer 1 1 26 ? ? ?
PRD_900120 C16 C16 C 0 1 N N R 97.386 41.584 51.960 3.017 1.503 0.703 GAL 3 C2 polymer 1 1 27 ? ? ?
PRD_900120 C17 C17 C 0 1 N N S 97.124 40.123 51.580 4.256 1.531 -0.197 GAL 3 C3 polymer 1 1 28 ? ? ?
PRD_900120 C18 C18 C 0 1 N N R 97.128 39.231 52.828 4.186 0.360 -1.181 GAL 3 C4 polymer 1 1 29 ? ? ?
PRD_900120 C19 C19 C 0 1 N N R 96.177 39.796 53.893 2.884 0.454 -1.982 GAL 3 C5 polymer 1 1 30 ? ? ?
PRD_900120 C20 C20 C 0 1 N N N 96.236 39.015 55.196 2.777 -0.745 -2.925 GAL 3 C6 polymer 1 1 31 ? ? ?
PRD_900120 O11 O11 O 0 1 N N N 97.232 42.409 50.815 3.036 2.632 1.578 GAL 3 O2 polymer 1 1 32 ? ? ?
PRD_900120 O12 O12 O 0 1 N N N 98.131 39.683 50.678 5.433 1.411 0.605 GAL 3 O3 polymer 1 1 33 ? ? ?
PRD_900120 O13 O13 O 0 1 N N N 98.446 39.149 53.355 4.215 -0.873 -0.460 GAL 3 O4 polymer 1 1 34 ? ? ?
PRD_900120 O14 O14 O 0 1 N N N 96.533 41.162 54.200 1.773 0.454 -1.083 GAL 3 O5 polymer 1 1 35 ? ? ?
PRD_900120 O15 O15 O 0 1 N N N 95.074 39.231 55.985 1.622 -0.598 -3.754 GAL 3 O6 polymer 1 1 36 ? ? ?
PRD_900120 H1 H1 H 0 1 N N N 94.505 46.872 56.622 -4.425 2.208 -0.508 NDG 1 H1 polymer 1 1 37 ? ? ?
PRD_900120 H2 H2 H 0 1 N N N 94.913 44.488 56.976 -2.764 0.671 -1.489 NDG 1 H2 polymer 1 1 38 ? ? ?
PRD_900120 H3 H3 H 0 1 N N N 97.518 44.919 55.435 -1.721 0.416 1.370 NDG 1 H3 polymer 1 1 39 ? ? ?
PRD_900120 H4 H4 H 0 1 N N N 95.035 43.303 54.667 -0.439 1.638 -1.119 NDG 1 H4 polymer 1 1 40 ? ? ?
PRD_900120 H5 H5 H 0 1 N N N 96.150 45.905 53.506 -1.454 2.942 1.449 NDG 1 H5 polymer 1 1 41 ? ? ?
PRD_900120 H6 H6 H 0 0 N N N 93.788 45.871 52.401 0.595 3.968 0.411 NDG 1 H61 polymer 1 1 42 ? ? ?
PRD_900120 H7 H7 H 0 0 N N N 95.112 44.890 51.687 -0.318 4.167 -1.104 NDG 1 H62 polymer 1 1 43 ? ? ?
PRD_900120 H8 H8 H 0 0 N N N 96.413 45.538 61.146 -5.445 -2.769 -0.850 NDG 1 H81 polymer 1 1 44 ? ? ?
PRD_900120 H9 H9 H 0 0 N N N 97.911 45.449 60.159 -5.889 -1.869 0.621 NDG 1 H82 polymer 1 1 45 ? ? ?
PRD_900120 H10 H10 H 0 0 N N N 96.904 46.936 60.131 -6.797 -1.612 -0.888 NDG 1 H83 polymer 1 1 46 ? ? ?
PRD_900120 H11 H11 H 0 1 N Y N 93.142 43.704 51.922 -0.438 6.117 0.269 NDG 1 HO6 polymer 1 1 47 ? ? ?
PRD_900120 H12 H12 H 0 1 N N N 97.381 46.040 57.682 -3.717 -0.869 0.802 NDG 1 HN2 polymer 1 1 48 ? ? ?
PRD_900120 H13 H13 H 0 1 N Y N 95.870 47.956 55.113 -4.098 2.843 1.772 NDG 1 HO1 polymer 1 1 49 ? ? ?
PRD_900120 H14 H14 H 0 1 N N N 98.288 44.080 57.652 -2.441 -1.981 0.660 FUC 2 H1 polymer 1 1 50 ? ? ?
PRD_900120 H15 H15 H 0 1 N N N 99.283 42.173 58.671 -1.095 -4.045 0.546 FUC 2 H2 polymer 1 1 51 ? ? ?
PRD_900120 H16 H16 H 0 1 N N N 97.787 40.425 56.662 1.066 -2.239 -0.637 FUC 2 H3 polymer 1 1 52 ? ? ?
PRD_900120 H17 H17 H 0 1 N N N 99.961 39.931 55.696 2.323 -2.771 1.415 FUC 2 H4 polymer 1 1 53 ? ? ?
PRD_900120 H18 H18 H 0 1 N N N 98.738 41.830 54.769 0.894 -0.762 1.425 FUC 2 H5 polymer 1 1 54 ? ? ?
PRD_900120 H19 H19 H 0 1 N N N 100.565 43.174 53.811 2.109 -1.366 3.500 FUC 2 H61 polymer 1 1 55 ? ? ?
PRD_900120 H20 H20 H 0 1 N N N 101.697 42.522 55.043 0.560 -0.573 3.875 FUC 2 H62 polymer 1 1 56 ? ? ?
PRD_900120 H21 H21 H 0 1 N N N 100.976 41.425 53.816 0.717 -2.339 4.032 FUC 2 H63 polymer 1 1 57 ? ? ?
PRD_900120 H22 H22 H 0 1 N Y N 97.324 41.123 59.376 -2.215 -3.335 -1.444 FUC 2 HO2 polymer 1 1 58 ? ? ?
PRD_900120 H23 H23 H 0 1 N Y N 99.129 38.834 57.715 1.022 -4.483 -1.464 FUC 2 HO3 polymer 1 1 59 ? ? ?
PRD_900120 H24 H24 H 0 1 N Y N 101.786 41.147 56.489 1.160 -3.971 3.122 FUC 2 HO4 polymer 1 1 60 ? ? ?
PRD_900120 H25 H25 H 0 1 N N N 95.395 42.009 52.668 1.742 2.489 -0.727 GAL 3 H1 polymer 1 1 61 ? ? ?
PRD_900120 H26 H26 H 0 1 N N N 98.414 41.664 52.344 3.016 0.585 1.292 GAL 3 H2 polymer 1 1 62 ? ? ?
PRD_900120 H27 H27 H 0 1 N N N 96.134 40.056 51.104 4.284 2.471 -0.749 GAL 3 H3 polymer 1 1 63 ? ? ?
PRD_900120 H28 H28 H 0 1 N N N 96.775 38.229 52.542 5.036 0.405 -1.862 GAL 3 H4 polymer 1 1 64 ? ? ?
PRD_900120 H29 H29 H 0 1 N N N 95.149 39.757 53.502 2.880 1.376 -2.563 GAL 3 H5 polymer 1 1 65 ? ? ?
PRD_900120 H30 H30 H 0 1 N N N 96.318 37.942 54.967 3.669 -0.796 -3.550 GAL 3 H61 polymer 1 1 66 ? ? ?
PRD_900120 H31 H31 H 0 1 N N N 97.120 39.337 55.766 2.691 -1.661 -2.341 GAL 3 H62 polymer 1 1 67 ? ? ?
PRD_900120 H32 H32 H 0 1 N Y N 97.832 42.124 50.136 2.276 2.681 2.175 GAL 3 HO2 polymer 1 1 68 ? ? ?
PRD_900120 H33 H33 H 0 1 N Y N 97.971 38.777 50.441 5.538 2.118 1.257 GAL 3 HO3 polymer 1 1 69 ? ? ?
PRD_900120 H34 H34 H 0 1 N Y N 98.445 38.596 54.127 5.011 -0.997 0.074 GAL 3 HO4 polymer 1 1 70 ? ? ?
PRD_900120 H35 H35 H 0 1 N Y N 95.140 38.731 56.790 1.492 -1.324 -4.379 GAL 3 HO6 polymer 1 1 71 ? ? ?
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PRD_900120 C1 C2 SING N N 1
PRD_900120 C1 O1 SING N N 2
PRD_900120 C1 O6 SING N N 3
PRD_900120 C1 H1 SING N N 4
PRD_900120 C2 C3 SING N N 5
PRD_900120 C2 N1 SING N N 6
PRD_900120 C2 H2 SING N N 7
PRD_900120 C3 C4 SING N N 8
PRD_900120 C3 O2 SING N N 9
PRD_900120 C3 H3 SING N N 10
PRD_900120 C4 C5 SING N N 11
PRD_900120 C4 O3 SING N N 12
PRD_900120 C4 H4 SING N N 13
PRD_900120 C5 C6 SING N N 14
PRD_900120 C5 O1 SING N N 15
PRD_900120 C5 H5 SING N N 16
PRD_900120 C6 O4 SING N N 17
PRD_900120 C6 H6 SING N N 18
PRD_900120 C6 H7 SING N N 19
PRD_900120 C7 C8 SING N N 20
PRD_900120 C7 O5 DOUB N N 21
PRD_900120 C7 N1 SING N N 22
PRD_900120 C8 H8 SING N N 23
PRD_900120 C8 H9 SING N N 24
PRD_900120 C8 H10 SING N N 25
PRD_900120 O4 H11 SING N N 26
PRD_900120 N1 H12 SING N N 27
PRD_900120 O6 H13 SING N N 28
PRD_900120 C9 C10 SING N N 29
PRD_900120 C9 O10 SING N N 30
PRD_900120 C9 H14 SING N N 31
PRD_900120 C10 C11 SING N N 32
PRD_900120 C10 O7 SING N N 33
PRD_900120 C10 H15 SING N N 34
PRD_900120 C11 C12 SING N N 35
PRD_900120 C11 O8 SING N N 36
PRD_900120 C11 H16 SING N N 37
PRD_900120 C12 C13 SING N N 38
PRD_900120 C12 O9 SING N N 39
PRD_900120 C12 H17 SING N N 40
PRD_900120 C13 C14 SING N N 41
PRD_900120 C13 O10 SING N N 42
PRD_900120 C13 H18 SING N N 43
PRD_900120 C14 H19 SING N N 44
PRD_900120 C14 H20 SING N N 45
PRD_900120 C14 H21 SING N N 46
PRD_900120 O7 H22 SING N N 47
PRD_900120 O8 H23 SING N N 48
PRD_900120 O9 H24 SING N N 49
PRD_900120 C15 C16 SING N N 50
PRD_900120 C15 O14 SING N N 51
PRD_900120 C15 H25 SING N N 52
PRD_900120 C16 C17 SING N N 53
PRD_900120 C16 O11 SING N N 54
PRD_900120 C16 H26 SING N N 55
PRD_900120 C17 C18 SING N N 56
PRD_900120 C17 O12 SING N N 57
PRD_900120 C17 H27 SING N N 58
PRD_900120 C18 C19 SING N N 59
PRD_900120 C18 O13 SING N N 60
PRD_900120 C18 H28 SING N N 61
PRD_900120 C19 C20 SING N N 62
PRD_900120 C19 O14 SING N N 63
PRD_900120 C19 H29 SING N N 64
PRD_900120 C20 O15 SING N N 65
PRD_900120 C20 H30 SING N N 66
PRD_900120 C20 H31 SING N N 67
PRD_900120 O11 H32 SING N N 68
PRD_900120 O12 H33 SING N N 69
PRD_900120 O13 H34 SING N N 70
PRD_900120 O15 H35 SING N N 71
PRD_900120 O2 C9 SING N N 72
PRD_900120 O3 C15 SING N N 73
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PRD_900120 InChI InChI 1.06 "InChI=1S/C20H35NO15/c1-5-10(25)12(27)14(29)19(32-5)36-17-9(21-6(2)24)18(31)33-8(4-23)16(17)35-20-15(30)13(28)11(26)7(3-22)34-20/h5,7-20,22-23,25-31H,3-4H2,1-2H3,(H,21,24)/t5-,7+,8+,9+,10+,11-,12+,13-,14-,15+,16+,17+,18-,19-,20-/m0/s1"
PRD_900120 InChIKey InChI 1.06 HBBOZFUQJDYASD-QNTOMPQOSA-N
PRD_900120 SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1O[C@@H](O[C@@H]2[C@@H](NC(C)=O)[C@@H](O)O[C@H](CO)[C@H]2O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)[C@@H](O)[C@H](O)[C@@H]1O"
PRD_900120 SMILES CACTVS 3.385 "C[CH]1O[CH](O[CH]2[CH](NC(C)=O)[CH](O)O[CH](CO)[CH]2O[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)[CH](O)[CH](O)[CH]1O"
PRD_900120 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O[C@@H]2[C@H]([C@H](O[C@@H]([C@H]2O[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O)O)CO)O)NC(=O)C)O)O)O"
PRD_900120 SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C(C(C(O1)OC2C(C(OC(C2OC3C(C(C(C(O3)CO)O)O)O)CO)O)NC(=O)C)O)O)O"
#
_pdbx_chem_comp_identifier.comp_id PRD_900120
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
;~{N}-[(2~{S},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-5-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris
(oxidanyl)oxan-2-yl]oxy-4-[(2~{R},3~{S},4~{R},5~{S},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-oxidanyl-oxan-3-
yl]ethanamide
;
#