data_PRD_000154 # _pdbx_reference_molecule.prd_id PRD_000154 _pdbx_reference_molecule.name "MINI-GRAMICIDIN A DIMER" _pdbx_reference_molecule.represent_as polymer _pdbx_reference_molecule.type Polypeptide _pdbx_reference_molecule.type_evidence_code ? _pdbx_reference_molecule.class Antibiotic _pdbx_reference_molecule.class_evidence_code ? _pdbx_reference_molecule.formula "C168 H226 N32 O26" _pdbx_reference_molecule.formula_weight 3109.791 _pdbx_reference_molecule.chem_comp_id ? _pdbx_reference_molecule.release_status REL _pdbx_reference_molecule.replaces ? _pdbx_reference_molecule.replaced_by ? _pdbx_reference_molecule.compound_details ;GRAMICIDIN IS A HETEROGENEOUS MIXTURE OF SEVERAL COMPOUNDS INCLUDING GRAMICIDIN A, B AND C WHICH ARE OBTAINED FROM BACILLUS BREVIS AND CALLED COLLECTIVELY GRAMICIDIN D HERE, A MODIFIDED GRAMICIDIN A IS REPRESENTED BY TWO SEQUENCES (SEQRES) AND ONE HET (SIN) ; _pdbx_reference_molecule.description ;THE N-TERMINI OF THE TWO IDENTICAL PEPTIDES, EACH A TRUNCATED GRAMICIDIN A WERE LINKED BY A SUCCINIC ACID IN A HEAD-TO-HEAD MANNER. ; _pdbx_reference_molecule.representative_PDB_id_code 1kqe # loop_ _pdbx_reference_entity_list.prd_id _pdbx_reference_entity_list.ref_entity_id _pdbx_reference_entity_list.component_id _pdbx_reference_entity_list.type _pdbx_reference_entity_list.details PRD_000154 1 1 polymer "CHAIN A PEPTIDE LIKE SEQUENCE RESIDUES 5 TO 16" PRD_000154 1 2 polymer "CHAIN A PEPTIDE LIKE SEQUENCE RESIDUES 5 TO 16" PRD_000154 2 3 non-polymer "SUCCINIC ACID" # _pdbx_reference_entity_nonpoly.prd_id PRD_000154 _pdbx_reference_entity_nonpoly.ref_entity_id 2 _pdbx_reference_entity_nonpoly.name "SUCCINIC ACID" _pdbx_reference_entity_nonpoly.chem_comp_id SIN _pdbx_reference_entity_nonpoly.details ? # loop_ _pdbx_reference_entity_link.prd_id _pdbx_reference_entity_link.link_id _pdbx_reference_entity_link.link_class _pdbx_reference_entity_link.ref_entity_id_1 _pdbx_reference_entity_link.entity_seq_num_1 _pdbx_reference_entity_link.comp_id_1 _pdbx_reference_entity_link.atom_id_1 _pdbx_reference_entity_link.ref_entity_id_2 _pdbx_reference_entity_link.entity_seq_num_2 _pdbx_reference_entity_link.comp_id_2 _pdbx_reference_entity_link.atom_id_2 _pdbx_reference_entity_link.value_order _pdbx_reference_entity_link.component_1 _pdbx_reference_entity_link.component_2 _pdbx_reference_entity_link.details _pdbx_reference_entity_link.nonpoly_res_num_1 _pdbx_reference_entity_link.nonpoly_res_num_2 PRD_000154 1 PN 1 1 ALA N 2 ? SIN C4 sing 1 3 ? ? ? PRD_000154 2 PN 1 1 ALA N 2 ? SIN C1 sing 2 3 ? ? ? # loop_ _pdbx_reference_entity_poly_link.prd_id _pdbx_reference_entity_poly_link.ref_entity_id _pdbx_reference_entity_poly_link.link_id _pdbx_reference_entity_poly_link.atom_id_1 _pdbx_reference_entity_poly_link.comp_id_1 _pdbx_reference_entity_poly_link.entity_seq_num_1 _pdbx_reference_entity_poly_link.atom_id_2 _pdbx_reference_entity_poly_link.comp_id_2 _pdbx_reference_entity_poly_link.entity_seq_num_2 _pdbx_reference_entity_poly_link.value_order _pdbx_reference_entity_poly_link.component_id _pdbx_reference_entity_poly_link.details _pdbx_reference_entity_poly_link.insert_code_1 _pdbx_reference_entity_poly_link.insert_code_2 PRD_000154 1 1 C ALA 1 N DVA 2 sing 1 ? ? ? PRD_000154 1 2 C DVA 2 N VAL 3 sing 1 ? ? ? PRD_000154 1 3 C VAL 3 N DVA 4 sing 1 ? ? ? PRD_000154 1 4 C DVA 4 N TRP 5 sing 1 ? ? ? PRD_000154 1 5 C TRP 5 N DLE 6 sing 1 ? ? ? PRD_000154 1 6 C DLE 6 N TRP 7 sing 1 ? ? ? PRD_000154 1 7 C TRP 7 N DLE 8 sing 1 ? ? ? PRD_000154 1 8 C DLE 8 N TRP 9 sing 1 ? ? ? PRD_000154 1 9 C TRP 9 N DLE 10 sing 1 ? ? ? PRD_000154 1 10 C DLE 10 N TRP 11 sing 1 ? ? ? PRD_000154 1 11 C TRP 11 N ETA 12 sing 1 ? ? ? PRD_000154 1 12 C ALA 1 N DVA 2 sing 2 ? ? ? PRD_000154 1 13 C DVA 2 N VAL 3 sing 2 ? ? ? PRD_000154 1 14 C VAL 3 N DVA 4 sing 2 ? ? ? PRD_000154 1 15 C DVA 4 N TRP 5 sing 2 ? ? ? PRD_000154 1 16 C TRP 5 N DLE 6 sing 2 ? ? ? PRD_000154 1 17 C DLE 6 N TRP 7 sing 2 ? ? ? PRD_000154 1 18 C TRP 7 N DLE 8 sing 2 ? ? ? PRD_000154 1 19 C DLE 8 N TRP 9 sing 2 ? ? ? PRD_000154 1 20 C TRP 9 N DLE 10 sing 2 ? ? ? PRD_000154 1 21 C DLE 10 N TRP 11 sing 2 ? ? ? PRD_000154 1 22 C TRP 11 N ETA 12 sing 2 ? ? ? # _pdbx_reference_entity_poly.prd_id PRD_000154 _pdbx_reference_entity_poly.ref_entity_id 1 _pdbx_reference_entity_poly.db_code NOR00243 _pdbx_reference_entity_poly.db_name NOR _pdbx_reference_entity_poly.type peptide-like # _pdbx_reference_entity_sequence.prd_id PRD_000154 _pdbx_reference_entity_sequence.ref_entity_id 1 _pdbx_reference_entity_sequence.type peptide-like _pdbx_reference_entity_sequence.NRP_flag Y # loop_ _pdbx_reference_entity_poly_seq.prd_id _pdbx_reference_entity_poly_seq.ref_entity_id _pdbx_reference_entity_poly_seq.num _pdbx_reference_entity_poly_seq.mon_id _pdbx_reference_entity_poly_seq.parent_mon_id _pdbx_reference_entity_poly_seq.hetero _pdbx_reference_entity_poly_seq.observed PRD_000154 1 1 ALA ALA N Y PRD_000154 1 2 DVA VAL N Y PRD_000154 1 3 VAL VAL N Y PRD_000154 1 4 DVA VAL N Y PRD_000154 1 5 TRP TRP N Y PRD_000154 1 6 DLE LEU N Y PRD_000154 1 7 TRP TRP N Y PRD_000154 1 8 DLE LEU N Y PRD_000154 1 9 TRP TRP N Y PRD_000154 1 10 DLE LEU N Y PRD_000154 1 11 TRP TRP N Y PRD_000154 1 12 ETA ? N Y # _pdbx_reference_entity_src_nat.prd_id PRD_000154 _pdbx_reference_entity_src_nat.ref_entity_id 1 _pdbx_reference_entity_src_nat.ordinal 1 _pdbx_reference_entity_src_nat.taxid 1393 _pdbx_reference_entity_src_nat.organism_scientific "bacillus brevis" _pdbx_reference_entity_src_nat.source ? _pdbx_reference_entity_src_nat.db_code NOR00245 _pdbx_reference_entity_src_nat.db_name Norine _pdbx_reference_entity_src_nat.strain ? # loop_ _pdbx_prd_audit.prd_id _pdbx_prd_audit.date _pdbx_prd_audit.processing_site _pdbx_prd_audit.action_type PRD_000154 2012-02-10 RCSB "Create molecule" PRD_000154 2012-07-09 PDBE "Other modification" PRD_000154 2012-12-12 RCSB "Initial release" PRD_000154 2013-06-03 RCSB "Other modification" PRD_000154 2017-05-04 RCSB "Other modification" PRD_000154 2023-09-20 PDBE "Modify audit" #