data_PRD_000207 # _pdbx_reference_molecule.prd_id PRD_000207 _pdbx_reference_molecule.name Decaplanin _pdbx_reference_molecule.represent_as polymer _pdbx_reference_molecule.type Glycopeptide _pdbx_reference_molecule.type_evidence_code ? _pdbx_reference_molecule.class Antibiotic _pdbx_reference_molecule.class_evidence_code ? _pdbx_reference_molecule.formula "C72 H86 Cl N9 O28" _pdbx_reference_molecule.formula_weight 1560.950 _pdbx_reference_molecule.chem_comp_id ? _pdbx_reference_molecule.release_status REL _pdbx_reference_molecule.replaces ? _pdbx_reference_molecule.replaced_by ? _pdbx_reference_molecule.compound_details ;DECAPLANIN IS A TRICYCLIC GLYCOPEPTIDE. HERE, DECAPLSNIN IS REPRESENTED BY GROUPING TOGETHER THE SEQUENCE (SEQRES) AND THE THREE LIGANDS (HET) BGC, ERE AND RAM. ; _pdbx_reference_molecule.description ;DECAPLANIN IS A TRICYCLIC GLYCOPEPTIDE. THE SCAFFOLD IS A HEPTAPEPTIDE WITH THE CONFIGURATION D-D-L-D-D-L-L, GLYCOSYLATED ; _pdbx_reference_molecule.representative_PDB_id_code 1hh3 # loop_ _pdbx_reference_entity_list.prd_id _pdbx_reference_entity_list.ref_entity_id _pdbx_reference_entity_list.component_id _pdbx_reference_entity_list.type _pdbx_reference_entity_list.details PRD_000207 1 1 polymer "PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 7" PRD_000207 2 2 non-polymer ERE PRD_000207 3 3 non-polymer BGC PRD_000207 4 4 non-polymer RAM # loop_ _pdbx_reference_entity_nonpoly.prd_id _pdbx_reference_entity_nonpoly.ref_entity_id _pdbx_reference_entity_nonpoly.name _pdbx_reference_entity_nonpoly.chem_comp_id _pdbx_reference_entity_nonpoly.details PRD_000207 2 4-EPI-VANCOSAMINE ERE ? PRD_000207 3 BETA-D-GLUCOSE BGC ? PRD_000207 4 ALPHA-L-RHAMNOSE RAM ? # loop_ _pdbx_reference_entity_link.prd_id _pdbx_reference_entity_link.link_id _pdbx_reference_entity_link.link_class _pdbx_reference_entity_link.ref_entity_id_1 _pdbx_reference_entity_link.entity_seq_num_1 _pdbx_reference_entity_link.comp_id_1 _pdbx_reference_entity_link.atom_id_1 _pdbx_reference_entity_link.ref_entity_id_2 _pdbx_reference_entity_link.entity_seq_num_2 _pdbx_reference_entity_link.comp_id_2 _pdbx_reference_entity_link.atom_id_2 _pdbx_reference_entity_link.value_order _pdbx_reference_entity_link.component_1 _pdbx_reference_entity_link.component_2 _pdbx_reference_entity_link.details _pdbx_reference_entity_link.nonpoly_res_num_1 _pdbx_reference_entity_link.nonpoly_res_num_2 PRD_000207 1 PN 1 4 GHP O4 3 ? BGC C1 sing 1 3 ? ? ? PRD_000207 2 PN 1 6 OMX OC 2 ? ERE C1 sing 1 2 ? ? ? PRD_000207 3 NN 3 ? BGC O2 4 ? RAM C1 sing 3 4 ? ? ? # loop_ _pdbx_reference_entity_poly_link.prd_id _pdbx_reference_entity_poly_link.ref_entity_id _pdbx_reference_entity_poly_link.link_id _pdbx_reference_entity_poly_link.atom_id_1 _pdbx_reference_entity_poly_link.comp_id_1 _pdbx_reference_entity_poly_link.entity_seq_num_1 _pdbx_reference_entity_poly_link.atom_id_2 _pdbx_reference_entity_poly_link.comp_id_2 _pdbx_reference_entity_poly_link.entity_seq_num_2 _pdbx_reference_entity_poly_link.value_order _pdbx_reference_entity_poly_link.component_id _pdbx_reference_entity_poly_link.details _pdbx_reference_entity_poly_link.insert_code_1 _pdbx_reference_entity_poly_link.insert_code_2 PRD_000207 1 1 C MLU 1 N OMZ 2 sing 1 ? ? ? PRD_000207 1 2 C OMZ 2 N ASN 3 sing 1 ? ? ? PRD_000207 1 3 OH OMZ 2 C5 GHP 4 sing 1 ? ? ? PRD_000207 1 4 C ASN 3 N GHP 4 sing 1 ? ? ? PRD_000207 1 5 C GHP 4 N GHP 5 sing 1 ? ? ? PRD_000207 1 6 C3 GHP 4 OH OMX 6 sing 1 ? ? ? PRD_000207 1 7 C GHP 5 N OMX 6 sing 1 ? ? ? PRD_000207 1 8 C3 GHP 5 CG1 3FG 7 sing 1 ? ? ? PRD_000207 1 9 C OMX 6 N 3FG 7 sing 1 ? ? ? # _pdbx_reference_entity_poly.prd_id PRD_000207 _pdbx_reference_entity_poly.ref_entity_id 1 _pdbx_reference_entity_poly.db_code NOR00692 _pdbx_reference_entity_poly.db_name NOR _pdbx_reference_entity_poly.type peptide-like # _pdbx_reference_entity_sequence.prd_id PRD_000207 _pdbx_reference_entity_sequence.ref_entity_id 1 _pdbx_reference_entity_sequence.type peptide-like _pdbx_reference_entity_sequence.NRP_flag Y # loop_ _pdbx_reference_entity_poly_seq.prd_id _pdbx_reference_entity_poly_seq.ref_entity_id _pdbx_reference_entity_poly_seq.num _pdbx_reference_entity_poly_seq.mon_id _pdbx_reference_entity_poly_seq.parent_mon_id _pdbx_reference_entity_poly_seq.hetero _pdbx_reference_entity_poly_seq.observed PRD_000207 1 1 MLU LEU N Y PRD_000207 1 2 OMZ TYR N Y PRD_000207 1 3 ASN ASN N Y PRD_000207 1 4 GHP PHE N Y PRD_000207 1 5 GHP PHE N Y PRD_000207 1 6 OMX TYR N Y PRD_000207 1 7 3FG PHE N Y # loop_ _pdbx_reference_entity_src_nat.prd_id _pdbx_reference_entity_src_nat.ref_entity_id _pdbx_reference_entity_src_nat.ordinal _pdbx_reference_entity_src_nat.taxid _pdbx_reference_entity_src_nat.organism_scientific _pdbx_reference_entity_src_nat.source _pdbx_reference_entity_src_nat.db_code _pdbx_reference_entity_src_nat.db_name _pdbx_reference_entity_src_nat.strain PRD_000207 1 1 ? "Kibdellosporangium deccaensis DSM4763" URL ? ? ? PRD_000207 1 2 31958 "Amycolatopsis orientalis" ? 430189 NADB ? PRD_000207 1 3 100235 "HIL Actinomycete culture Y-86,36910 (DSM 4763)" ? 1hh3 PDB ? PRD_000207 1 4 163672 "Nocardia nov. sp." ? 420095 NADB ? PRD_000207 1 5 208441 "Amycolatopsis decaplanina sp. nov. Strain DSM 44594" DOI ? ? ? # loop_ _pdbx_prd_audit.prd_id _pdbx_prd_audit.date _pdbx_prd_audit.processing_site _pdbx_prd_audit.action_type PRD_000207 2012-02-08 RCSB "Create molecule" PRD_000207 2012-07-09 PDBE "Other modification" PRD_000207 2012-12-12 RCSB "Initial release" PRD_000207 2013-06-03 RCSB "Other modification" PRD_000207 2017-05-04 RCSB "Other modification" PRD_000207 2020-07-29 RCSB "Other modification" PRD_000207 2023-09-20 PDBE "Modify audit" #