data_PRD_000484
# 
_pdbx_reference_molecule.prd_id                       PRD_000484 
_pdbx_reference_molecule.name                         Balhimycin 
_pdbx_reference_molecule.represent_as                 polymer 
_pdbx_reference_molecule.type                         Glycopeptide 
_pdbx_reference_molecule.type_evidence_code           ? 
_pdbx_reference_molecule.class                        "Antibiotic, Antimicrobial" 
_pdbx_reference_molecule.class_evidence_code          ? 
_pdbx_reference_molecule.formula                      "C66 H75 Cl2 N9 O25" 
_pdbx_reference_molecule.formula_weight               1465.253 
_pdbx_reference_molecule.chem_comp_id                 ? 
_pdbx_reference_molecule.release_status               REL 
_pdbx_reference_molecule.replaces                     ? 
_pdbx_reference_molecule.replaced_by                  ? 
_pdbx_reference_molecule.compound_details             
;BALHIMYCIN IS A TRICYCLIC GLYCOPEPTIDE. THE SCAFFOLD IS A HEPTAPEPTIDE WITH THE CONFIGURATION D-D-L-D-D-L-L. IT IS
FURTHER GLYCOSYLATED BY TWO MONOSACCHARIDES: A D-GLUCOSE AND A 4-OXO-VANCOSAMINE. HERE, BALHIMYCIN IS REPRESENTED
GROUPING TOGETHER THE SEQUENCE (SEQRES) AND TWO LIGANDS (HET) DVC AND BGC
;
_pdbx_reference_molecule.description                  
;BALHIMYCIN IS A TRICYCLIC HEPTAPEPTIDE GLYCOSYLATED BY D-GLUCOSE (RESIDUE 8) ON RESIDUE 4 AND BY 4-OXO-VANCOSAMINE
(RESIDUE 9) ON RESIDUE 6.
;
_pdbx_reference_molecule.representative_PDB_id_code   1go6 
# 
loop_
_pdbx_reference_entity_list.prd_id 
_pdbx_reference_entity_list.ref_entity_id 
_pdbx_reference_entity_list.component_id 
_pdbx_reference_entity_list.type 
_pdbx_reference_entity_list.details 
PRD_000484 1 1 polymer     "PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 7" 
PRD_000484 2 2 non-polymer "SUGAR RESIDUE"                         
PRD_000484 3 3 non-polymer "SUGAR RESIDUE"                         
# 
loop_
_pdbx_reference_entity_nonpoly.prd_id 
_pdbx_reference_entity_nonpoly.ref_entity_id 
_pdbx_reference_entity_nonpoly.name 
_pdbx_reference_entity_nonpoly.chem_comp_id 
_pdbx_reference_entity_nonpoly.details 
PRD_000484 2 BETA-D-GLUCOSE                                       BGC ? 
PRD_000484 3 "(2R,4S,6S)-4-AZANYL-4,6-DIMETHYL-OXANE-2,5,5-TRIOL" DVC ? 
# 
loop_
_pdbx_reference_entity_link.prd_id 
_pdbx_reference_entity_link.link_id 
_pdbx_reference_entity_link.link_class 
_pdbx_reference_entity_link.ref_entity_id_1 
_pdbx_reference_entity_link.entity_seq_num_1 
_pdbx_reference_entity_link.comp_id_1 
_pdbx_reference_entity_link.atom_id_1 
_pdbx_reference_entity_link.ref_entity_id_2 
_pdbx_reference_entity_link.entity_seq_num_2 
_pdbx_reference_entity_link.comp_id_2 
_pdbx_reference_entity_link.atom_id_2 
_pdbx_reference_entity_link.value_order 
_pdbx_reference_entity_link.component_1 
_pdbx_reference_entity_link.component_2 
_pdbx_reference_entity_link.details 
_pdbx_reference_entity_link.nonpoly_res_num_1 
_pdbx_reference_entity_link.nonpoly_res_num_2 
PRD_000484 1 PN 1 4 GHP O4  2 ? BGC C1 sing 1 2 ? ? ? 
PRD_000484 2 PN 1 6 OMY ODE 3 ? DVC C1 sing 1 3 ? ? ? 
# 
loop_
_pdbx_reference_entity_poly_link.prd_id 
_pdbx_reference_entity_poly_link.ref_entity_id 
_pdbx_reference_entity_poly_link.link_id 
_pdbx_reference_entity_poly_link.atom_id_1 
_pdbx_reference_entity_poly_link.comp_id_1 
_pdbx_reference_entity_poly_link.entity_seq_num_1 
_pdbx_reference_entity_poly_link.atom_id_2 
_pdbx_reference_entity_poly_link.comp_id_2 
_pdbx_reference_entity_poly_link.entity_seq_num_2 
_pdbx_reference_entity_poly_link.value_order 
_pdbx_reference_entity_poly_link.component_id 
_pdbx_reference_entity_poly_link.details 
_pdbx_reference_entity_poly_link.insert_code_1 
_pdbx_reference_entity_poly_link.insert_code_2 
PRD_000484 1 1 C  MLU 1 N   OMZ 2 sing 1 ? ? ? 
PRD_000484 1 2 C  OMZ 2 N   ASN 3 sing 1 ? ? ? 
PRD_000484 1 3 OH OMZ 2 C3  GHP 4 sing 1 ? ? ? 
PRD_000484 1 4 C  ASN 3 N   GHP 4 sing 1 ? ? ? 
PRD_000484 1 5 C5 GHP 4 OCZ OMY 6 sing 1 ? ? ? 
PRD_000484 1 6 C  GHP 4 N   GHP 5 sing 1 ? ? ? 
PRD_000484 1 7 C  GHP 5 N   OMY 6 sing 1 ? ? ? 
PRD_000484 1 8 C5 GHP 5 CG1 3FG 7 sing 1 ? ? ? 
PRD_000484 1 9 C  OMY 6 N   3FG 7 sing 1 ? ? ? 
# 
_pdbx_reference_entity_poly.prd_id          PRD_000484 
_pdbx_reference_entity_poly.ref_entity_id   1 
_pdbx_reference_entity_poly.db_code         NOR00709 
_pdbx_reference_entity_poly.db_name         NOR 
_pdbx_reference_entity_poly.type            peptide-like 
# 
_pdbx_reference_entity_sequence.prd_id          PRD_000484 
_pdbx_reference_entity_sequence.ref_entity_id   1 
_pdbx_reference_entity_sequence.type            peptide-like 
_pdbx_reference_entity_sequence.NRP_flag        Y 
# 
loop_
_pdbx_reference_entity_poly_seq.prd_id 
_pdbx_reference_entity_poly_seq.ref_entity_id 
_pdbx_reference_entity_poly_seq.num 
_pdbx_reference_entity_poly_seq.mon_id 
_pdbx_reference_entity_poly_seq.parent_mon_id 
_pdbx_reference_entity_poly_seq.hetero 
_pdbx_reference_entity_poly_seq.observed 
PRD_000484 1 1 MLU LEU N Y 
PRD_000484 1 2 OMZ TYR N Y 
PRD_000484 1 3 ASN ASN N Y 
PRD_000484 1 4 GHP PHE N Y 
PRD_000484 1 5 GHP PHE N Y 
PRD_000484 1 6 OMY TYR N Y 
PRD_000484 1 7 3FG PHE N Y 
# 
loop_
_pdbx_reference_entity_src_nat.prd_id 
_pdbx_reference_entity_src_nat.ref_entity_id 
_pdbx_reference_entity_src_nat.ordinal 
_pdbx_reference_entity_src_nat.taxid 
_pdbx_reference_entity_src_nat.organism_scientific 
_pdbx_reference_entity_src_nat.source 
_pdbx_reference_entity_src_nat.db_code 
_pdbx_reference_entity_src_nat.db_name 
_pdbx_reference_entity_src_nat.strain 
PRD_000484 1 1 37632  "Amycolatopsis sp. STRAIN: Y-86, 21022" ? NOR00709 Norine ? 
PRD_000484 1 2 37632  "Amycolatopsis sp. T-86,21022"          ? 470056   NADB   ? 
PRD_000484 1 3 33910  "Amycolatopsis mediterranei"            ? NOR00685 Norine ? 
PRD_000484 1 4 208443 "Amycolatopsis balhimycina"             ? NOR00685 Norine ? 
# 
loop_
_pdbx_prd_audit.prd_id 
_pdbx_prd_audit.date 
_pdbx_prd_audit.processing_site 
_pdbx_prd_audit.action_type 
PRD_000484 2012-02-03 RCSB "Create molecule"    
PRD_000484 2012-07-09 PDBE "Other modification" 
PRD_000484 2012-11-28 RCSB "Modify class"       
PRD_000484 2012-12-12 RCSB "Initial release"    
PRD_000484 2013-06-03 RCSB "Other modification" 
PRD_000484 2017-05-04 RCSB "Other modification" 
PRD_000484 2020-07-29 RCSB "Other modification" 
PRD_000484 2023-09-20 PDBE "Modify audit"       
#