data_PRD_000487 # _pdbx_reference_molecule.prd_id PRD_000487 _pdbx_reference_molecule.name Tsushimycin _pdbx_reference_molecule.represent_as polymer _pdbx_reference_molecule.type Lipopeptide _pdbx_reference_molecule.type_evidence_code ? _pdbx_reference_molecule.class Antibiotic _pdbx_reference_molecule.class_evidence_code ? _pdbx_reference_molecule.formula "C59 H93 N13 O20" _pdbx_reference_molecule.formula_weight 1304.65 _pdbx_reference_molecule.chem_comp_id ? _pdbx_reference_molecule.release_status REL _pdbx_reference_molecule.replaces ? _pdbx_reference_molecule.replaced_by ? _pdbx_reference_molecule.compound_details ;TSUSHIMYCIN IS A CYCLIC DODEDECAMER LIPOPETIDE. HERE, TSUSHIMYCIN IS REPRESENTED BY GROUPING TOGETHER THE SEQUENCE (SEQRES) AND ONE LIGAND (HET) LNG. ; _pdbx_reference_molecule.description ;TSUSHIMYCIN IS A CYCLIC LIPOPEPTIDE. THE SCAFFOLD IS MADE OF TWO PARTS: (1) ASP1 N-TERM EXOCYCLIC PART (2) A DECAPEPTIDE RING. RESIDUE 2 AND 11 FORM A PEPTIDE BOND. A TETRADECENOIC FATTY ACID IS LINKED TO THE RESIDUE 1 ; _pdbx_reference_molecule.representative_PDB_id_code 1w3m # loop_ _pdbx_reference_entity_list.prd_id _pdbx_reference_entity_list.ref_entity_id _pdbx_reference_entity_list.component_id _pdbx_reference_entity_list.type _pdbx_reference_entity_list.details PRD_000487 1 1 polymer "PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 11" PRD_000487 2 2 non-polymer "FATTY ACID RESIDUE" # _pdbx_reference_entity_nonpoly.prd_id PRD_000487 _pdbx_reference_entity_nonpoly.ref_entity_id 2 _pdbx_reference_entity_nonpoly.name "DELTA-3ISOTETRADECENOIC ACID" _pdbx_reference_entity_nonpoly.chem_comp_id LNG _pdbx_reference_entity_nonpoly.details ? # _pdbx_reference_entity_link.prd_id PRD_000487 _pdbx_reference_entity_link.link_id 1 _pdbx_reference_entity_link.link_class PN _pdbx_reference_entity_link.ref_entity_id_1 1 _pdbx_reference_entity_link.entity_seq_num_1 1 _pdbx_reference_entity_link.comp_id_1 ASP _pdbx_reference_entity_link.atom_id_1 N _pdbx_reference_entity_link.ref_entity_id_2 2 _pdbx_reference_entity_link.entity_seq_num_2 ? _pdbx_reference_entity_link.comp_id_2 LNG _pdbx_reference_entity_link.atom_id_2 C1 _pdbx_reference_entity_link.value_order sing _pdbx_reference_entity_link.component_1 1 _pdbx_reference_entity_link.component_2 2 _pdbx_reference_entity_link.details ? _pdbx_reference_entity_link.nonpoly_res_num_1 ? _pdbx_reference_entity_link.nonpoly_res_num_2 ? # loop_ _pdbx_reference_entity_poly_link.prd_id _pdbx_reference_entity_poly_link.ref_entity_id _pdbx_reference_entity_poly_link.link_id _pdbx_reference_entity_poly_link.atom_id_1 _pdbx_reference_entity_poly_link.comp_id_1 _pdbx_reference_entity_poly_link.entity_seq_num_1 _pdbx_reference_entity_poly_link.atom_id_2 _pdbx_reference_entity_poly_link.comp_id_2 _pdbx_reference_entity_poly_link.entity_seq_num_2 _pdbx_reference_entity_poly_link.value_order _pdbx_reference_entity_poly_link.component_id _pdbx_reference_entity_poly_link.details _pdbx_reference_entity_poly_link.insert_code_1 _pdbx_reference_entity_poly_link.insert_code_2 PRD_000487 1 1 C ASP 1 N VLL 2 sing 1 ? ? ? PRD_000487 1 2 C VLL 2 N CPI 3 sing 1 ? ? ? PRD_000487 1 3 NG2 VLL 2 C PRO 11 sing 1 ? ? ? PRD_000487 1 4 C CPI 3 N 2AS 4 sing 1 ? ? ? PRD_000487 1 5 C 2AS 4 N ASP 5 sing 1 ? ? ? PRD_000487 1 6 C ASP 5 N GLY 6 sing 1 ? ? ? PRD_000487 1 7 C GLY 6 N ASP 7 sing 1 ? ? ? PRD_000487 1 8 C ASP 7 N GLY 8 sing 1 ? ? ? PRD_000487 1 9 C GLY 8 N VDL 9 sing 1 ? ? ? PRD_000487 1 10 C VDL 9 N VAL 10 sing 1 ? ? ? PRD_000487 1 11 C VAL 10 N PRO 11 sing 1 ? ? ? # _pdbx_reference_entity_poly.prd_id PRD_000487 _pdbx_reference_entity_poly.ref_entity_id 1 _pdbx_reference_entity_poly.db_code NOR00763 _pdbx_reference_entity_poly.db_name NOR _pdbx_reference_entity_poly.type peptide-like # _pdbx_reference_entity_sequence.prd_id PRD_000487 _pdbx_reference_entity_sequence.ref_entity_id 1 _pdbx_reference_entity_sequence.type peptide-like _pdbx_reference_entity_sequence.NRP_flag Y # loop_ _pdbx_reference_entity_poly_seq.prd_id _pdbx_reference_entity_poly_seq.ref_entity_id _pdbx_reference_entity_poly_seq.num _pdbx_reference_entity_poly_seq.mon_id _pdbx_reference_entity_poly_seq.parent_mon_id _pdbx_reference_entity_poly_seq.hetero _pdbx_reference_entity_poly_seq.observed PRD_000487 1 1 ASP ASP N Y PRD_000487 1 2 VLL THR N Y PRD_000487 1 3 CPI ? N Y PRD_000487 1 4 2AS ASP N Y PRD_000487 1 5 ASP ASP N Y PRD_000487 1 6 GLY GLY N Y PRD_000487 1 7 ASP ASP N Y PRD_000487 1 8 GLY GLY N Y PRD_000487 1 9 VDL THR N Y PRD_000487 1 10 VAL VAL N Y PRD_000487 1 11 PRO PRO N Y # loop_ _pdbx_reference_entity_src_nat.prd_id _pdbx_reference_entity_src_nat.ref_entity_id _pdbx_reference_entity_src_nat.ordinal _pdbx_reference_entity_src_nat.taxid _pdbx_reference_entity_src_nat.organism_scientific _pdbx_reference_entity_src_nat.source _pdbx_reference_entity_src_nat.db_code _pdbx_reference_entity_src_nat.db_name _pdbx_reference_entity_src_nat.strain PRD_000487 1 1 ? "Streptomyces strain Z-237" ? 210110 NADB ? PRD_000487 1 2 196914 "ACTINOPLANES FRIULIENSIS" ? NOR00763 Norine ? # loop_ _pdbx_prd_audit.prd_id _pdbx_prd_audit.date _pdbx_prd_audit.processing_site _pdbx_prd_audit.action_type PRD_000487 2012-02-01 RCSB "Create molecule" PRD_000487 2012-07-09 PDBE "Other modification" PRD_000487 2012-12-12 RCSB "Initial release" PRD_000487 2013-06-03 RCSB "Other modification" PRD_000487 2017-05-04 RCSB "Other modification" PRD_000487 2023-09-20 PDBE "Modify audit" #