data_wwPDB_remediated_restraints_file_for_PDB_entry_1e8e # This wwPDB archive file contains, for PDB entry 1e8e: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389–396. save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_1e8e _Entry.Title "wwPDB remediated NMR restraints for PDB entry 1e8e" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 1e8e" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_1e8e _Assembly.ID 1 _Assembly.Name 1e8e _Assembly.Number_of_components 2 _Assembly.Organic_ligands 1 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "all free" _Assembly.Molecular_mass 14295.949 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 "CYTOCHROME C" 1 $CYTOCHROME_C__ A . no . . . . . . rr_1e8e 1 2 "HEME C" 2 $HEME_C B . no . . . . . . rr_1e8e 1 stop_ save_ save_CYTOCHROME_C__ _Entity.Sf_category entity _Entity.Sf_framecode CYTOCHROME_C__ _Entity.Entry_ID rr_1e8e _Entity.ID 1 _Entity.Name CYTOCHROME_C__ _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code ; DVTNAEKLVYKYTNIAHSAN PMYEAPSITDGKIFFNRKFK TPSGKEAACASCHTNNPANV GKNIVTGKEIPPLAPRVNTK RFTDIDKVEDEFTKHCNDIL GADCSPSEKANFIAYLLTET KPTK ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 124 _Entity.Paramagnetic no _Entity.Thiol_state "all free" _Entity.Parent_entity_ID 1 _Entity.Formula_weight 13677.435 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . ASP . rr_1e8e 1 2 . VAL . rr_1e8e 1 3 . THR . rr_1e8e 1 4 . ASN . rr_1e8e 1 5 . ALA . rr_1e8e 1 6 . GLU . rr_1e8e 1 7 . LYS . rr_1e8e 1 8 . LEU . rr_1e8e 1 9 . VAL . rr_1e8e 1 10 . TYR . rr_1e8e 1 11 . LYS . rr_1e8e 1 12 . TYR . rr_1e8e 1 13 . THR . rr_1e8e 1 14 . ASN . rr_1e8e 1 15 . ILE . rr_1e8e 1 16 . ALA . rr_1e8e 1 17 . HIS . rr_1e8e 1 18 . SER . rr_1e8e 1 19 . ALA . rr_1e8e 1 20 . ASN . rr_1e8e 1 21 . PRO . rr_1e8e 1 22 . MET . rr_1e8e 1 23 . TYR . rr_1e8e 1 24 . GLU . rr_1e8e 1 25 . ALA . rr_1e8e 1 26 . PRO . rr_1e8e 1 27 . SER . rr_1e8e 1 28 . ILE . rr_1e8e 1 29 . THR . rr_1e8e 1 30 . ASP . rr_1e8e 1 31 . GLY . rr_1e8e 1 32 . LYS . rr_1e8e 1 33 . ILE . rr_1e8e 1 34 . PHE . rr_1e8e 1 35 . PHE . rr_1e8e 1 36 . ASN . rr_1e8e 1 37 . ARG . rr_1e8e 1 38 . LYS . rr_1e8e 1 39 . PHE . rr_1e8e 1 40 . LYS . rr_1e8e 1 41 . THR . rr_1e8e 1 42 . PRO . rr_1e8e 1 43 . SER . rr_1e8e 1 44 . GLY . rr_1e8e 1 45 . LYS . rr_1e8e 1 46 . GLU . rr_1e8e 1 47 . ALA . rr_1e8e 1 48 . ALA . rr_1e8e 1 49 . CYS . rr_1e8e 1 50 . ALA . rr_1e8e 1 51 . SER . rr_1e8e 1 52 . CYS . rr_1e8e 1 53 . HIS . rr_1e8e 1 54 . THR . rr_1e8e 1 55 . ASN . rr_1e8e 1 56 . ASN . rr_1e8e 1 57 . PRO . rr_1e8e 1 58 . ALA . rr_1e8e 1 59 . ASN . rr_1e8e 1 60 . VAL . rr_1e8e 1 61 . GLY . rr_1e8e 1 62 . LYS . rr_1e8e 1 63 . ASN . rr_1e8e 1 64 . ILE . rr_1e8e 1 65 . VAL . rr_1e8e 1 66 . THR . rr_1e8e 1 67 . GLY . rr_1e8e 1 68 . LYS . rr_1e8e 1 69 . GLU . rr_1e8e 1 70 . ILE . rr_1e8e 1 71 . PRO . rr_1e8e 1 72 . PRO . rr_1e8e 1 73 . LEU . rr_1e8e 1 74 . ALA . rr_1e8e 1 75 . PRO . rr_1e8e 1 76 . ARG . rr_1e8e 1 77 . VAL . rr_1e8e 1 78 . ASN . rr_1e8e 1 79 . THR . rr_1e8e 1 80 . LYS . rr_1e8e 1 81 . ARG . rr_1e8e 1 82 . PHE . rr_1e8e 1 83 . THR . rr_1e8e 1 84 . ASP . rr_1e8e 1 85 . ILE . rr_1e8e 1 86 . ASP . rr_1e8e 1 87 . LYS . rr_1e8e 1 88 . VAL . rr_1e8e 1 89 . GLU . rr_1e8e 1 90 . ASP . rr_1e8e 1 91 . GLU . rr_1e8e 1 92 . PHE . rr_1e8e 1 93 . THR . rr_1e8e 1 94 . LYS . rr_1e8e 1 95 . HIS . rr_1e8e 1 96 . CYS . rr_1e8e 1 97 . ASN . rr_1e8e 1 98 . ASP . rr_1e8e 1 99 . ILE . rr_1e8e 1 100 . LEU . rr_1e8e 1 101 . GLY . rr_1e8e 1 102 . ALA . rr_1e8e 1 103 . ASP . rr_1e8e 1 104 . CYS . rr_1e8e 1 105 . SER . rr_1e8e 1 106 . PRO . rr_1e8e 1 107 . SER . rr_1e8e 1 108 . GLU . rr_1e8e 1 109 . LYS . rr_1e8e 1 110 . ALA . rr_1e8e 1 111 . ASN . rr_1e8e 1 112 . PHE . rr_1e8e 1 113 . ILE . rr_1e8e 1 114 . ALA . rr_1e8e 1 115 . TYR . rr_1e8e 1 116 . LEU . rr_1e8e 1 117 . LEU . rr_1e8e 1 118 . THR . rr_1e8e 1 119 . GLU . rr_1e8e 1 120 . THR . rr_1e8e 1 121 . LYS . rr_1e8e 1 122 . PRO . rr_1e8e 1 123 . THR . rr_1e8e 1 124 . LYS . rr_1e8e 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . ASP 1 1 rr_1e8e 1 . VAL 2 2 rr_1e8e 1 . THR 3 3 rr_1e8e 1 . ASN 4 4 rr_1e8e 1 . ALA 5 5 rr_1e8e 1 . GLU 6 6 rr_1e8e 1 . LYS 7 7 rr_1e8e 1 . LEU 8 8 rr_1e8e 1 . VAL 9 9 rr_1e8e 1 . TYR 10 10 rr_1e8e 1 . LYS 11 11 rr_1e8e 1 . TYR 12 12 rr_1e8e 1 . THR 13 13 rr_1e8e 1 . ASN 14 14 rr_1e8e 1 . ILE 15 15 rr_1e8e 1 . ALA 16 16 rr_1e8e 1 . HIS 17 17 rr_1e8e 1 . SER 18 18 rr_1e8e 1 . ALA 19 19 rr_1e8e 1 . ASN 20 20 rr_1e8e 1 . PRO 21 21 rr_1e8e 1 . MET 22 22 rr_1e8e 1 . TYR 23 23 rr_1e8e 1 . GLU 24 24 rr_1e8e 1 . ALA 25 25 rr_1e8e 1 . PRO 26 26 rr_1e8e 1 . SER 27 27 rr_1e8e 1 . ILE 28 28 rr_1e8e 1 . THR 29 29 rr_1e8e 1 . ASP 30 30 rr_1e8e 1 . GLY 31 31 rr_1e8e 1 . LYS 32 32 rr_1e8e 1 . ILE 33 33 rr_1e8e 1 . PHE 34 34 rr_1e8e 1 . PHE 35 35 rr_1e8e 1 . ASN 36 36 rr_1e8e 1 . ARG 37 37 rr_1e8e 1 . LYS 38 38 rr_1e8e 1 . PHE 39 39 rr_1e8e 1 . LYS 40 40 rr_1e8e 1 . THR 41 41 rr_1e8e 1 . PRO 42 42 rr_1e8e 1 . SER 43 43 rr_1e8e 1 . GLY 44 44 rr_1e8e 1 . LYS 45 45 rr_1e8e 1 . GLU 46 46 rr_1e8e 1 . ALA 47 47 rr_1e8e 1 . ALA 48 48 rr_1e8e 1 . CYS 49 49 rr_1e8e 1 . ALA 50 50 rr_1e8e 1 . SER 51 51 rr_1e8e 1 . CYS 52 52 rr_1e8e 1 . HIS 53 53 rr_1e8e 1 . THR 54 54 rr_1e8e 1 . ASN 55 55 rr_1e8e 1 . ASN 56 56 rr_1e8e 1 . PRO 57 57 rr_1e8e 1 . ALA 58 58 rr_1e8e 1 . ASN 59 59 rr_1e8e 1 . VAL 60 60 rr_1e8e 1 . GLY 61 61 rr_1e8e 1 . LYS 62 62 rr_1e8e 1 . ASN 63 63 rr_1e8e 1 . ILE 64 64 rr_1e8e 1 . VAL 65 65 rr_1e8e 1 . THR 66 66 rr_1e8e 1 . GLY 67 67 rr_1e8e 1 . LYS 68 68 rr_1e8e 1 . GLU 69 69 rr_1e8e 1 . ILE 70 70 rr_1e8e 1 . PRO 71 71 rr_1e8e 1 . PRO 72 72 rr_1e8e 1 . LEU 73 73 rr_1e8e 1 . ALA 74 74 rr_1e8e 1 . PRO 75 75 rr_1e8e 1 . ARG 76 76 rr_1e8e 1 . VAL 77 77 rr_1e8e 1 . ASN 78 78 rr_1e8e 1 . THR 79 79 rr_1e8e 1 . LYS 80 80 rr_1e8e 1 . ARG 81 81 rr_1e8e 1 . PHE 82 82 rr_1e8e 1 . THR 83 83 rr_1e8e 1 . ASP 84 84 rr_1e8e 1 . ILE 85 85 rr_1e8e 1 . ASP 86 86 rr_1e8e 1 . LYS 87 87 rr_1e8e 1 . VAL 88 88 rr_1e8e 1 . GLU 89 89 rr_1e8e 1 . ASP 90 90 rr_1e8e 1 . GLU 91 91 rr_1e8e 1 . PHE 92 92 rr_1e8e 1 . THR 93 93 rr_1e8e 1 . LYS 94 94 rr_1e8e 1 . HIS 95 95 rr_1e8e 1 . CYS 96 96 rr_1e8e 1 . ASN 97 97 rr_1e8e 1 . ASP 98 98 rr_1e8e 1 . ILE 99 99 rr_1e8e 1 . LEU 100 100 rr_1e8e 1 . GLY 101 101 rr_1e8e 1 . ALA 102 102 rr_1e8e 1 . ASP 103 103 rr_1e8e 1 . CYS 104 104 rr_1e8e 1 . SER 105 105 rr_1e8e 1 . PRO 106 106 rr_1e8e 1 . SER 107 107 rr_1e8e 1 . GLU 108 108 rr_1e8e 1 . LYS 109 109 rr_1e8e 1 . ALA 110 110 rr_1e8e 1 . ASN 111 111 rr_1e8e 1 . PHE 112 112 rr_1e8e 1 . ILE 113 113 rr_1e8e 1 . ALA 114 114 rr_1e8e 1 . TYR 115 115 rr_1e8e 1 . LEU 116 116 rr_1e8e 1 . LEU 117 117 rr_1e8e 1 . THR 118 118 rr_1e8e 1 . GLU 119 119 rr_1e8e 1 . THR 120 120 rr_1e8e 1 . LYS 121 121 rr_1e8e 1 . PRO 122 122 rr_1e8e 1 . THR 123 123 rr_1e8e 1 . LYS 124 124 rr_1e8e 1 stop_ save_ save_HEME_C _Entity.Sf_category entity _Entity.Sf_framecode HEME_C _Entity.Entry_ID rr_1e8e _Entity.ID 2 _Entity.Name HEME_C _Entity.Type non-polymer _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_chirality yes _Entity.Nstd_linkage no _Entity.Nonpolymer_comp_ID HEC _Entity.Nonpolymer_comp_label $chem_comp_HEC _Entity.Number_of_monomers 1 _Entity.Paramagnetic no _Entity.Thiol_state "not present" _Entity.Parent_entity_ID 2 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . HEC . rr_1e8e 2 stop_ save_ save_chem_comp_HEC _Chem_comp.Sf_category chem_comp _Chem_comp.Sf_framecode chem_comp_HEC _Chem_comp.Entry_ID rr_1e8e _Chem_comp.ID HEC _Chem_comp.Name "HEME C" _Chem_comp.Type non-polymer _Chem_comp.PDB_code HEC _Chem_comp.Formal_charge 0 _Chem_comp.Paramagnetic no _Chem_comp.Aromatic yes _Chem_comp.Formula "C34 H34 Fe N4 O4" _Chem_comp.Formula_weight 618.514 save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_1e8e _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 20 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_1e8e _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 1e8e.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_1e8e 1 1 1e8e.mr . . DYANA/DIANA 2 peak "Not applicable" "Not applicable" 0 rr_1e8e 1 1 1e8e.mr . . "MR format" 3 "nomenclature mapping" "Not applicable" "Not applicable" 0 rr_1e8e 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_1e8e _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER OXIDOREDUCTASE(CYTOCHROME) 20-SEP-00 1E8E *TITLE SOLUTION STRUCTURE OF METHYLOPHILUS METHYLOTROPHUS *TITLE 2 CYTOCHROME C''. INSIGHTS INTO THE STRUCTURAL BASIS OF *TITLE 3 HAEM-LIGAND DETACHMENT *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: CYTOCHROME C''; *COMPND 3 CHAIN: A; *COMPND 4 OTHER_DETAILS: C-TYPE CYTOCHROME, FULLY OXIDISED FORM *SOURCE MOL_ID: 1; *SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOPHILUS METHYLOTROPHUS; *SOURCE 3 ORGANISM_COMMON: BACTERIUM W3A1 *KEYWDS CYTOCHROME C'', LIGAND DETACHMENT, REDOX-BOHR EFFECT, *KEYWDS 2 PARAMAGNETIC *EXPDTA NMR, 20 STRUCTURES *AUTHOR L.BRENNAN,D.L.TURNER,P.FARELEIRA,H.SANTOS *REVDAT 1 21-SEP-00 1E8E 0 ; save_