*HEADER RNA 23-JUN-00 1F6X *TITLE SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM *TITLE 2 OLIGORIBONUCLEOTIDE *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: RNASE P RNA RIBOZYME, P4 DOMAIN; *COMPND 3 CHAIN: A; *COMPND 4 FRAGMENT: P4 STEM; *COMPND 5 ENGINEERED: YES *SOURCE MOL_ID: 1; *SOURCE 2 SYNTHETIC: YES; *SOURCE 3 OTHER_DETAILS: SYNTHESIZED FROM DNA OLIGONUCLEOTIDE *SOURCE 4 TEMPLATE BY T7 RNA POLYMERASE *KEYWDS RIBONUCLEASE P, RIBOZYME, TRANSFER RNA PROCESSING, P4 STEM, *KEYWDS 2 METAL BINDING SITE *EXPDTA NMR, MINIMIZED AVERAGE STRUCTURE *AUTHOR M.SCHMITZ, I.TINOCO JR. *REVDAT 1 09-OCT-00 1F6X 0 { Combined x-plor distance and dihedral constraint file for P4wt } {DISTANCE CONSTRAINTS FOR P4WT} {Last modified Oct 7 1998: fixed AU, NOEs up to 2' + some 3'} {Last modified Nov 30 1998: removed bogus tetraloop constraint} {Last modified May 7 1999: added another 5-7 constraint (H2'-H6)} {Last modified June 28 1999: added 3' and 4' constraints} {Last modified July 3 1999: fixed 7-8 constraints (was: 6-7) } {Last modified June 23 2000: commented for PDB submission } {base pair constraints; standard WC base pair distances} {base pairing between 1 and 27 GC pair} assign (residue 27 and name h41)(residue 1 and name o6) 1.7 .1 .1 assign (residue 27 and name n3)(residue 1 and name h21) 3.0 .1 .1 assign (residue 27 and name o2)(residue 1 and name h21) 2.0 .1 .1 assign (residue 27 and name n3)(residue 1 and name h1) 1.9 .1 .1 {base pairing between 2 and 26 GC pair} assign (residue 26 and name h41)(residue 2 and name o6) 1.7 .1 .1 assign (residue 26 and name n3)(residue 2 and name h21) 3.0 .1 .1 assign (residue 26 and name o2)(residue 2 and name h21) 2.0 .1 .1 assign (residue 26 and name n3)(residue 2 and name h1) 1.9 .1 .1 {base pairing between 3 and 25 AU pair} assign (residue 3 and name h2)(residue 25 and name o2) 3.2 .1 .1 assign (residue 3 and name n1)(residue 25 and name h3) 1.9 .1 .1 assign (residue 3 and name h61)(residue 25 and name o4) 1.8 .1 .1 assign (residue 3 and name h2)(residue 25 and name h3) 2.9 .1 .1 {base pairing between 4 and 24 AU pair} assign (residue 4 and name h2)(residue 24 and name o2) 3.2 .1 .1 assign (residue 4 and name n1)(residue 24 and name h3) 1.9 .1 .1 assign (residue 4 and name h61)(residue 24 and name o4) 1.8 .1 .1 assign (residue 4 and name h2)(residue 24 and name h3) 2.9 .1 .1 {base pairing between 5 and 24 GC pair} assign (residue 23 and name h41)(residue 5 and name o6) 1.7 .1 .1 assign (residue 23 and name n3)(residue 5 and name h21) 3.0 .1 .1 assign (residue 23 and name o2)(residue 5 and name h21) 2.0 .1 .1 assign (residue 23 and name n3)(residue 5 and name h1) 1.9 .1 .1 {base 6: unpaired} {base pairing between 7 and 22 CG pair} { relax } assign (residue 7 and name h41)(residue 22 and name o6) 1.7 .2 .2 assign (residue 7 and name n3)(residue 22 and name h21) 3.0 .2 .2 assign (residue 7 and name o2)(residue 22 and name h21) 2.0 .2 .2 assign (residue 7 and name n3)(residue 22 and name h1) 1.9 .2 .2 {base pairing between 8 and 21 CG pair} assign (residue 8 and name h41)(residue 21 and name o6) 1.7 .1 .1 assign (residue 8 and name n3)(residue 21 and name h21) 3.0 .1 .1 assign (residue 8 and name o2)(residue 21 and name h21) 2.0 .1 .1 assign (residue 8 and name n3)(residue 21 and name h1) 1.9 .1 .1 {base pairing between 9 and 20 GC pair} assign (residue 20 and name h41)(residue 9 and name o6) 1.7 .1 .1 assign (residue 20 and name n3)(residue 9 and name h21) 3.0 .1 .1 assign (residue 20 and name o2)(residue 9 and name h21) 2.0 .1 .1 assign (residue 20 and name n3)(residue 9 and name h1) 1.9 .1 .1 {base pairing between 10 and 19 GC pair} assign (residue 19 and name h41)(residue 10 and name o6) 1.7 .1 .1 assign (residue 19 and name n3)(residue 10 and name h21) 3.0 .1 .1 assign (residue 19 and name o2)(residue 10 and name h21) 2.0 .1 .1 assign (residue 19 and name n3)(residue 10 and name h1) 1.9 .1 .1 {base pairing between 11 and 18 AU pair} assign (residue 18 and name h2)(residue 11 and name o2) 3.2 .1 .1 assign (residue 18 and name n1)(residue 11 and name h3) 1.9 .1 .1 assign (residue 18 and name h61)(residue 11 and name o4) 1.8 .1 .1 assign (residue 18 and name h2)(residue 11 and name h3) 2.9 .1 .1 {base pairing between 12 and 17 CG pair} assign (residue 12 and name h41)(residue 17 and name o6) 1.7 .1 .1 assign (residue 12 and name n3)(residue 17 and name h21) 3.0 .1 .1 assign (residue 12 and name o2)(residue 17 and name h21) 2.0 .1 .1 assign (residue 12 and name n3)(residue 17 and name h1) 1.9 .1 .1 {base 13-16: UUCG tetraloop, fill in from literature ...} assign (residue 13 and name o2)(residue 16 and name h1) 1.9 .2 .2 assign (residue 13 and name o2)(residue 16 and name h21) 2.4 .2 .2 assign (residue 13 and name h3)(residue 16 and name h21) 3.8 .2 .2 assign (residue 13 and name h3)(residue 16 and name h1) 4.4 .2 .2 {assign (residue 13 and name h3)(residue 16 and name 06) 4.0 .2 .2} {end of basepairing constraints; 48 total} {experimental constraints} {constraints for residue 1 from expt} assign (residue 1 and name h8)(residue 1 and name h1') 2.0 0.0 3.0 assign (residue 1 and name h8)(residue 1 and name h2'') 2.0 0.0 2.0 {constraints for residue 1 to 2 from expt} assign (residue 1 and name h1')(residue 2 and name h8) 2.0 0.0 2.0 assign (residue 1 and name h2'')(residue 2 and name h8) 1.8 0.0 1.4 assign (residue 1 and name h2'')(residue 2 and name h1') 2.5 0.0 2.5 assign (residue 1 and name h3')(residue 2 and name h8) 2.0 0.0 2.0 assign (residue 1 and name h4')(residue 2 and name h8) 2.5 0.0 2.5 assign (residue 1 and name h8)(residue 2 and name h8) 2.5 0.0 2.0 {constraints for residue 2 from expt} assign (residue 2 and name h8)(residue 2 and name h1') 2.0 0.0 2.0 assign (residue 2 and name h8)(residue 2 and name h2'') 2.0 0.0 3.0 {constraints for residue 2 to 3 from expt} assign (residue 2 and name h1')(residue 3 and name h8) 2.5 0.0 2.5 assign (residue 2 and name h2'')(residue 3 and name h8) 1.8 0.0 1.4 assign (residue 2 and name h2'')(residue 3 and name h1') 2.5 0.0 2.5 assign (residue 2 and name h3')(residue 3 and name h8) 2.5 0.0 2.5 { overlap } assign (residue 2 and name h8)(residue 3 and name h8) 2.5 0.0 2.5 {constraints for residue 3 from expt} assign (residue 3 and name h8)(residue 3 and name h1') 2.0 0.0 2.0 assign (residue 3 and name h8)(residue 3 and name h2'') 2.0 0.0 3.0 assign (residue 3 and name h2)(residue 3 and name h1') 3.0 0.0 4.0 {constraints for residue 3 to 4 from expt} assign (residue 3 and name h1')(residue 4 and name h8) 2.5 0.0 2.5 assign (residue 3 and name h2'')(residue 4 and name h8) 1.8 0.0 1.4 assign (residue 3 and name h2'')(residue 4 and name h1') 3.0 0.0 4.0 assign (residue 3 and name h3')(residue 4 and name h8) 2.5 0.0 2.5 assign (residue 3 and name h4')(residue 4 and name h8) 3.0 0.0 4.0 { overlap } assign (residue 3 and name h8)(residue 4 and name h8) 2.5 0.0 2.5 assign (residue 3 and name h2)(residue 4 and name h1') 2.0 0.0 2.0 assign (residue 3 and name h2)(residue 4 and name h2) 2.0 0.0 3.0 {constraints for residue 3 to 26 from expt} assign (residue 3 and name h2)(residue 26 and name h1') 2.0 0.0 2.0 {constraints for residue 4 from expt} assign (residue 4 and name h8)(residue 4 and name h1') 2.0 0.0 2.0 assign (residue 4 and name h8)(residue 4 and name h2'') 2.0 0.0 3.0 assign (residue 4 and name h2)(residue 4 and name h1') 3.0 0.0 4.0 {constraints for residue 4 to 5 from expt} assign (residue 4 and name h1')(residue 5 and name h8) 2.5 0.0 2.5 assign (residue 4 and name h2'')(residue 5 and name h8) 1.8 0.0 1.4 assign (residue 4 and name h2'')(residue 5 and name h1') 2.5 0.0 2.5 assign (residue 4 and name h3')(residue 5 and name h8) 2.5 0.0 2.5 assign (residue 4 and name h4')(residue 5 and name h8) 3.0 0.0 4.0 assign (residue 4 and name h8)(residue 5 and name h8) 3.0 0.0 4.0 assign (residue 4 and name h2)(residue 5 and name h1') 2.5 0.0 2.5 {constraints for residue 4 to 25 from expt} assign (residue 4 and name h2)(residue 25 and name h1') 2.0 0.0 2.0 {constraints for residue 5 from expt} assign (residue 5 and name h8)(residue 5 and name h1') 2.0 0.0 2.0 assign (residue 5 and name h8)(residue 5 and name h2'') 1.8 0.0 1.4 assign (residue 5 and name h8)(residue 5 and name h3') 2.5 0.0 2.5 {constraints for residue 5 to 6 from expt - ??} assign (residue 5 and name h1')(residue 6 and name h3') 2.0 0.0 3.0 assign (residue 5 and name h2'')(residue 6 and name h5) 3.0 0.0 4.0 {assign (residue 5 and name h2'')(residue 6 and name h6) 3.0 0.0 4.0} {constraints for residue 5 to 7 from expt} assign (residue 5 and name h1')(residue 7 and name h6) 3.0 0.0 4.0 { overlap } assign (residue 5 and name h1')(residue 7 and name h5) 2.5 0.0 2.5 assign (residue 5 and name h2'')(residue 7 and name h6) 2.5 0.0 2.5 assign (residue 5 and name h2'')(residue 7 and name h5) 2.0 0.0 2.0 assign (residue 5 and name h8)(residue 7 and name h5) 3.0 0.0 4.0 {constraints for residue 6 from expt} assign (residue 6 and name h6)(residue 6 and name h1') 2.0 0.0 2.0 assign (residue 6 and name h6)(residue 6 and name h2'') 1.8 0.0 1.4 assign (residue 6 and name h3')(residue 6 and name h6) 2.0 0.0 2.0 {constraints for residue 6 to 7 from expt} assign (residue 6 and name h1')(residue 7 and name h5) 2.5 0.0 2.5 assign (residue 6 and name h1')(residue 7 and name h6) 3.0 0.0 4.0 assign (residue 6 and name h2'')(residue 7 and name h5) 2.5 0.0 2.5 assign (residue 6 and name h2'')(residue 7 and name h6) 2.5 0.0 2.5 assign (residue 6 and name h3')(residue 7 and name h6) 3.0 0.0 4.0 {constraints for residue 7 from expt} assign (residue 7 and name h6)(residue 7 and name h1') 2.0 0.0 2.0 assign (residue 7 and name h6)(residue 7 and name h2'') 2.5 0.0 2.5 assign (residue 7 and name h5)(residue 7 and name h1') 3.0 0.0 4.0 {constraints for residue 7 to 8 from expt} assign (residue 7 and name h1')(residue 8 and name h6) 2.5 0.0 2.5 assign (residue 7 and name h2'')(residue 8 and name h6) 1.8 0.0 1.4 assign (residue 7 and name h3')(residue 8 and name h6) 2.5 0.0 2.5 assign (residue 7 and name h6)(residue 8 and name h6) 3.0 0.0 4.0 assign (residue 7 and name h6)(residue 8 and name h5) 2.5 0.0 2.5 assign (residue 7 and name h5)(residue 8 and name h5) 3.0 0.0 4.0 {constraints for residue 8 from expt} assign (residue 8 and name h6)(residue 8 and name h1') 2.0 0.0 2.0 assign (residue 8 and name h6)(residue 8 and name h2'') 2.5 0.0 2.5 assign (residue 8 and name h5)(residue 8 and name h1') 3.0 0.0 4.0 {constraints for residue 8 to 9 from expt} assign (residue 8 and name h1')(residue 9 and name h8) 2.5 0.0 2.5 assign (residue 8 and name h1')(residue 9 and name h1') 3.0 0.0 4.0 assign (residue 8 and name h2'')(residue 9 and name h8) 1.8 0.0 1.4 assign (residue 8 and name h2'')(residue 9 and name h1') 2.5 0.0 2.5 assign (residue 8 and name h3')(residue 9 and name h8) 2.5 0.0 2.5 assign (residue 8 and name h6)(residue 9 and name h8) 2.5 0.0 2.5 {constraints for residue 9 from expt} assign (residue 9 and name h8)(residue 9 and name h1') 2.5 0.0 2.5 assign (residue 9 and name h8)(residue 9 and name h2'') 2.5 0.0 2.5 {constraints for residue 9 to 10 from expt} assign (residue 9 and name h1')(residue 10 and name h8) 2.5 0.0 2.5 assign (residue 9 and name h2'')(residue 10 and name h8) 1.8 0.0 1.4 assign (residue 9 and name h2'')(residue 10 and name h1') 2.5 0.0 2.5 assign (residue 9 and name h3')(residue 10 and name h8) 2.0 0.0 2.0 { overlap? } assign (residue 9 and name h8)(residue 10 and name h8) 2.5 0.0 2.5 {constraints for residue 10 from expt} assign (residue 9 and name h8)(residue 9 and name h1') 2.5 0.0 2.5 assign (residue 9 and name h8)(residue 9 and name h2'') 2.5 0.0 2.5 {constraints for residue 10 to 11 from expt} assign (residue 10 and name h1')(residue 11 and name h6) 2.5 0.0 2.5 assign (residue 10 and name h1')(residue 11 and name h5) 3.0 0.0 3.0 assign (residue 10 and name h2'')(residue 11 and name h6) 1.8 0.0 1.4 assign (residue 10 and name h2'')(residue 11 and name h5) 2.0 0.0 2.0 assign (residue 10 and name h2'')(residue 11 and name h1') 2.5 0.0 2.5 assign (residue 10 and name h3')(residue 11 and name h6) 2.5 0.0 2.5 { overlap! } assign (residue 10 and name h8)(residue 11 and name h6) 2.5 0.0 2.5 assign (residue 10 and name h8)(residue 11 and name h5) 2.0 0.0 2.0 {constraints for residue 11 from expt} assign (residue 11 and name h6)(residue 11 and name h1') 2.0 0.0 2.0 assign (residue 11 and name h6)(residue 11 and name h2'') 2.5 0.0 2.5 assign (residue 11 and name h5)(residue 11 and name h1') 3.0 0.0 4.0 {constraints for residue 11 to 12 from expt} assign (residue 11 and name h1')(residue 12 and name h6) 2.0 0.0 2.0 assign (residue 11 and name h2'')(residue 12 and name h1') 2.5 0.0 2.5 assign (residue 11 and name h2'')(residue 12 and name h6) 1.8 0.0 1.4 assign (residue 11 and name h2'')(residue 12 and name h5) 2.0 0.0 2.0 assign (residue 11 and name h3')(residue 12 and name h6) 2.0 0.0 2.0 assign (residue 11 and name h6)(residue 12 and name h6) 3.0 0.0 4.0 assign (residue 11 and name h6)(residue 12 and name h5) 2.5 0.0 2.5 assign (residue 11 and name h5)(residue 12 and name h5) 2.0 0.0 2.0 {constraints for residue 12 from expt} assign (residue 12 and name h6)(residue 12 and name h1') 2.0 0.0 2.0 assign (residue 12 and name h6)(residue 12 and name h2'') 2.5 0.0 2.5 {constraints for residue 12 to 13 from expt} assign (residue 12 and name h1')(residue 13 and name h6) 2.0 0.0 2.0 assign (residue 12 and name h2'')(residue 13 and name h1') 3.0 0.0 4.0 assign (residue 12 and name h2'')(residue 13 and name h6) 1.8 0.0 1.4 assign (residue 12 and name h3')(residue 13 and name h6) 2.0 0.0 2.0 assign (residue 12 and name h6)(residue 13 and name h6) 3.0 0.0 4.0 assign (residue 12 and name h6)(residue 13 and name h5) 2.5 0.0 2.5 assign (residue 12 and name h5)(residue 13 and name h5) 2.5 0.0 2.5 {constraints for residue 13 from expt} assign (residue 13 and name h6)(residue 13 and name h1') 2.0 0.0 2.0 assign (residue 13 and name h6)(residue 13 and name h2'') 2.5 0.0 2.5 {constraints for residue 13 to 14 from expt} assign (residue 13 and name h1')(residue 14 and name h5) 3.0 0.0 4.0 assign (residue 13 and name h3')(residue 14 and name h5) 3.0 0.0 4.0 assign (residue 13 and name h4')(residue 14 and name h5) 2.0 0.0 2.0 assign (residue 13 and name h2'')(residue 14 and name h6) 3.0 0.0 4.0 {constraints for residue 13 to 15 from expt} assign (residue 13 and name h1')(residue 15 and name h5) 2.5 0.0 2.5 assign (residue 13 and name h2'')(residue 15 and name h5) 2.0 0.0 2.0 assign (residue 13 and name h2'')(residue 15 and name h6) 3.0 0.0 4.0 assign (residue 13 and name h3')(residue 15 and name h5) 3.0 0.0 4.0 assign (residue 13 and name h6)(residue 15 and name h5) 3.0 0.0 4.0 {constraints for residue 14 from expt} assign (residue 14 and name h6)(residue 14 and name h1') 2.0 0.0 2.0 assign (residue 14 and name h6)(residue 14 and name h2'') 1.8 0.0 1.4 {constraints for residue 14 to 15 from expt} assign (residue 14 and name h2'')(residue 15 and name h6) 2.5 0.0 2.5 assign (residue 14 and name h2'')(residue 15 and name h5) 2.5 0.0 2.5 assign (residue 14 and name h3')(residue 15 and name h5) 2.0 0.0 2.0 assign (residue 14 and name h3')(residue 15 and name h6) 2.0 0.0 2.0 assign (residue 14 and name h4')(residue 15 and name h5) 2.5 0.0 2.5 assign (residue 14 and name h4')(residue 15 and name h6) 2.0 0.0 2.0 assign (residue 14 and name h5')(residue 15 and name h5) 2.0 0.0 2.0 assign (residue 14 and name h5'')(residue 15 and name h5) 2.0 0.0 2.0 assign (residue 14 and name h6)(residue 15 and name h6) 2.0 0.0 2.0 {constraints for residue 15 from expt} assign (residue 15 and name h5)(residue 15 and name h2'') 2.5 0.0 2.5 assign (residue 15 and name h6)(residue 15 and name h1') 2.5 0.0 2.5 assign (residue 15 and name h6)(residue 15 and name h2'') 2.0 0.0 2.0 {constraints for residue 15 to 16 from expt} assign (residue 15 and name h3')(residue 16 and name h1') 3.0 0.0 4.0 assign (residue 15 and name h4')(residue 16 and name h1') 3.0 0.0 4.0 assign (residue 15 and name h4')(residue 16 and name h3') 3.0 0.0 4.0 {constraints for residue 16 from expt - syn!!} assign (residue 16 and name h8)(residue 16 and name h1') 1.8 0.0 1.4 assign (residue 16 and name h8)(residue 16 and name h2'') 2.5 0.0 2.5 {constraints for residue 16 to 17 from expt} assign (residue 16 and name h1')(residue 17 and name h1') 2.5 0.0 2.5 assign (residue 16 and name h2'')(residue 17 and name h8) 2.5 0.0 2.5 assign (residue 16 and name h3')(residue 17 and name h1') 2.5 0.0 2.5 assign (residue 16 and name h3')(residue 17 and name h8) 2.5 0.0 2.5 assign (residue 16 and name h8)(residue 17 and name h8) 2.5 0.0 2.5 {constraints for residue 17 from expt} assign (residue 17 and name h8)(residue 17 and name h1') 2.0 0.0 2.0 assign (residue 17 and name h8)(residue 17 and name h2'') 2.5 0.0 2.5 {constraints for residue 17 to 18 from expt} assign (residue 17 and name h1')(residue 18 and name h8) 2.5 0.0 2.5 assign (residue 17 and name h2'')(residue 18 and name h1') 2.5 0.0 2.5 assign (residue 17 and name h2'')(residue 18 and name h8) 1.8 0.0 1.4 assign (residue 17 and name h8)(residue 18 and name h8) 2.0 0.0 2.0 {constraints for residue 18 from expt} assign (residue 18 and name h8)(residue 18 and name h1') 2.5 0.0 2.5 assign (residue 18 and name h8)(residue 18 and name h2'') 2.5 0.0 2.5 assign (residue 18 and name h2)(residue 18 and name h1') 3.0 0.0 4.0 {constraints for residue 18 to 19 from expt} assign (residue 18 and name h1')(residue 19 and name h1') 3.0 0.0 4.0 assign (residue 18 and name h1')(residue 19 and name h5) 3.0 0.0 4.0 assign (residue 18 and name h1')(residue 19 and name h6) 2.5 0.0 2.5 assign (residue 18 and name h2'')(residue 19 and name h1') 2.5 0.0 2.5 assign (residue 18 and name h2'')(residue 19 and name h5) 2.0 0.0 2.0 assign (residue 18 and name h2'')(residue 19 and name h6) 2.0 0.0 2.0 assign (residue 18 and name h3')(residue 19 and name h6) 2.5 0.0 2.5 assign (residue 18 and name h8)(residue 19 and name h5) 2.5 0.0 2.5 assign (residue 18 and name h8)(residue 19 and name h6) 2.5 0.0 2.5 assign (residue 18 and name h2)(residue 19 and name h1') 2.0 0.0 2.0 {constraints for residue 18 to 12 from expt} assign (residue 18 and name h2)(residue 12 and name h1') 2.5 0.0 2.5 {constraints for residue 19 from expt} assign (residue 19 and name h6)(residue 19 and name h1') 2.0 0.0 2.0 assign (residue 19 and name h6)(residue 19 and name h2'') 2.5 0.0 2.5 assign (residue 19 and name h5)(residue 19 and name h1') 3.0 0.0 4.0 {constraints for residue 19 to 20 from expt} assign (residue 19 and name h1')(residue 20 and name h1') 3.0 0.0 4.0 assign (residue 19 and name h1')(residue 20 and name h5) 3.0 0.0 4.0 assign (residue 19 and name h1')(residue 20 and name h6) 2.5 0.0 2.5 assign (residue 19 and name h2'')(residue 20 and name h1') 2.5 0.0 2.5 assign (residue 19 and name h2'')(residue 20 and name h5) 2.5 0.0 2.5 assign (residue 19 and name h2'')(residue 20 and name h6) 2.0 0.0 2.0 assign (residue 19 and name h3')(residue 20 and name h6) 3.0 0.0 4.0 assign (residue 19 and name h5)(residue 20 and name h5) 2.5 0.0 2.5 assign (residue 19 and name h5)(residue 20 and name h6) 3.0 0.0 4.0 assign (residue 19 and name h6)(residue 20 and name h5) 2.5 0.0 2.5 assign (residue 19 and name h6)(residue 20 and name h6) 2.5 0.0 2.5 {constraints for residue 20 from expt} assign (residue 20 and name h6)(residue 20 and name h1') 2.0 0.0 2.0 assign (residue 20 and name h6)(residue 20 and name h2'') 2.5 0.0 2.5 assign (residue 20 and name h5)(residue 20 and name h1') 3.0 0.0 4.0 {constraints for residue 20 to 21 from expt} assign (residue 20 and name h1')(residue 21 and name h8) 2.5 0.0 2.5 assign (residue 20 and name h2'')(residue 21 and name h1') 2.5 0.0 2.5 assign (residue 20 and name h2'')(residue 21 and name h8) 1.8 0.0 1.4 assign (residue 20 and name h3')(residue 21 and name h8) 2.5 0.0 2.5 assign (residue 20 and name h5)(residue 21 and name h8) 3.0 0.0 4.0 assign (residue 20 and name h6)(residue 21 and name h8) 2.5 0.0 2.5 {constraints for residue 21 from expt} assign (residue 21 and name h8)(residue 21 and name h1') 2.0 0.0 2.0 assign (residue 21 and name h8)(residue 21 and name h2'') 2.5 0.0 2.5 {constraints for residue 21 to 22 from expt} assign (residue 21 and name h1')(residue 22 and name h8) 2.5 0.0 2.5 assign (residue 21 and name h2'')(residue 22 and name h1') 3.0 0.0 4.0 assign (residue 21 and name h2'')(residue 22 and name h8) 1.8 0.0 1.4 assign (residue 21 and name h3')(residue 22 and name h8) 2.0 0.0 2.0 assign (residue 21 and name h4')(residue 22 and name h8) 2.5 0.0 2.5 assign (residue 21 and name h8)(residue 22 and name h8) 2.5 0.0 2.5 {constraints for residue 22 from expt} assign (residue 22 and name h8)(residue 22 and name h1') 2.0 0.0 2.0 assign (residue 22 and name h8)(residue 22 and name h2'') 2.5 0.0 2.5 {constraints for residue 22 to 23 from expt} assign (residue 22 and name h1')(residue 23 and name h1') 3.0 0.0 4.0 assign (residue 22 and name h1')(residue 23 and name h5) 3.0 0.0 4.0 assign (residue 22 and name h1')(residue 23 and name h6) 2.5 0.0 2.5 assign (residue 22 and name h2'')(residue 23 and name h1') 2.5 0.0 2.5 assign (residue 22 and name h2'')(residue 23 and name h5) 2.0 0.0 2.0 assign (residue 22 and name h2'')(residue 23 and name h6) 2.0 0.0 2.0 assign (residue 22 and name h3')(residue 23 and name h6) 2.0 0.0 2.0 assign (residue 22 and name h4')(residue 23 and name h6) 2.5 0.0 2.5 { overlap } assign (residue 22 and name h8)(residue 23 and name h5) 2.5 0.0 2.5 assign (residue 22 and name h8)(residue 23 and name h6) 2.5 0.0 2.5 {constraints for residue 23 from expt} assign (residue 23 and name h6)(residue 23 and name h1') 2.0 0.0 2.0 assign (residue 23 and name h6)(residue 23 and name h2'') 2.5 0.0 2.5 assign (residue 23 and name h5)(residue 23 and name h1') 3.0 0.0 4.0 {constraints for residue 23 to 24 from expt} assign (residue 23 and name h1')(residue 24 and name h5) 3.0 0.0 4.0 assign (residue 23 and name h1')(residue 24 and name h6) 2.5 0.0 2.5 assign (residue 23 and name h2'')(residue 24 and name h1') 3.0 0.0 4.0 assign (residue 23 and name h2'')(residue 24 and name h5) 3.0 0.0 4.0 assign (residue 23 and name h2'')(residue 24 and name h6) 1.8 0.0 1.4 assign (residue 23 and name h3')(residue 24 and name h6) 2.5 0.0 2.5 { overlap } assign (residue 23 and name h4')(residue 24 and name h6) 3.0 0.0 4.0 assign (residue 23 and name h5)(residue 24 and name h5) 2.5 0.0 2.5 assign (residue 23 and name h5)(residue 24 and name h6) 3.0 0.0 4.0 assign (residue 23 and name h6)(residue 24 and name h5) 3.0 0.0 4.0 assign (residue 23 and name h6)(residue 24 and name h6) 2.5 0.0 2.5 {constraints for residue 24 from expt} assign (residue 24 and name h6)(residue 24 and name h1') 2.5 0.0 2.5 assign (residue 24 and name h6)(residue 24 and name h2'') 2.5 0.0 2.5 assign (residue 24 and name h5)(residue 24 and name h1') 3.0 0.0 4.0 {constraints for residue 24 to 25 from expt} assign (residue 24 and name h1')(residue 25 and name h5) 3.0 0.0 4.0 assign (residue 24 and name h1')(residue 25 and name h6) 2.5 0.0 2.5 assign (residue 24 and name h2'')(residue 25 and name h1') 3.0 0.0 4.0 assign (residue 24 and name h2'')(residue 25 and name h5) 3.0 0.0 4.0 assign (residue 24 and name h2'')(residue 25 and name h6) 1.8 0.0 1.4 assign (residue 24 and name h3')(residue 25 and name h6) 2.5 0.0 2.5 { overlap } assign (residue 24 and name h5)(residue 25 and name h5) 3.0 0.0 4.0 assign (residue 24 and name h5)(residue 25 and name h6) 3.0 0.0 4.0 assign (residue 24 and name h6)(residue 25 and name h5) 3.0 0.0 4.0 assign (residue 24 and name h6)(residue 25 and name h6) 3.0 0.0 4.0 {constraints for residue 25 from expt} assign (residue 25 and name h6)(residue 25 and name h1') 2.5 0.0 2.5 assign (residue 25 and name h6)(residue 25 and name h2'') 2.5 0.0 2.5 assign (residue 25 and name h5)(residue 25 and name h1') 3.0 0.0 4.0 {constraints for residue 25 to 26 from expt} assign (residue 25 and name h1')(residue 26 and name h6) 2.5 0.0 2.5 assign (residue 25 and name h2'')(residue 26 and name h1') 3.0 0.0 4.0 assign (residue 25 and name h2'')(residue 26 and name h5) 3.0 0.0 4.0 assign (residue 25 and name h2'')(residue 26 and name h6) 2.0 0.0 2.0 assign (residue 25 and name h3')(residue 26 and name h6) 2.0 0.0 2.0 { > H2'' } assign (residue 25 and name h5)(residue 26 and name h5) 2.5 0.0 2.5 assign (residue 25 and name h5)(residue 26 and name h6) 3.0 0.0 4.0 assign (residue 25 and name h6)(residue 26 and name h5) 2.5 0.0 2.5 assign (residue 25 and name h6)(residue 26 and name h6) 2.5 0.0 2.5 {constraints for residue 26 from expt} assign (residue 26 and name h6)(residue 26 and name h1') 2.5 0.0 2.5 assign (residue 26 and name h6)(residue 26 and name h2'') 2.5 0.0 2.5 {constraints for residue 26 to 27 from expt} assign (residue 26 and name h1')(residue 27 and name h6) 2.5 0.0 2.5 assign (residue 26 and name h2'')(residue 27 and name h1') 3.0 0.0 4.0 assign (residue 26 and name h2'')(residue 27 and name h5) 2.5 0.0 2.5 assign (residue 26 and name h2'')(residue 27 and name h6) 2.0 0.0 2.0 assign (residue 26 and name h3')(residue 27 and name h6) 2.5 0.0 2.5 assign (residue 26 and name h5)(residue 27 and name h5) 2.5 0.0 2.5 assign (residue 26 and name h6)(residue 27 and name h5) 2.5 0.0 2.5 assign (residue 26 and name h6)(residue 27 and name h6) 2.5 0.0 2.5 {constraints for residue 27 from expt} assign (residue 27 and name h6)(residue 27 and name h1') 2.5 0.0 2.5 assign (residue 27 and name h6)(residue 27 and name h2'') 2.5 0.0 2.5 assign (residue 27 and name h6)(residue 27 and name h1') 3.0 0.0 4.0 {end of experimental constraints; 69 intra, 192 inter, 261 total} {end of distance restraints; 309 total} {===================================== 8< ====================================} {TORSION ANGLE CONSTRAINTS FOR P4WT} {Last modified Oct. 4 1998: all angles} {Last modified May. 9 1999: fixed UUCG torsions} {Last modified May. 19 1999: added U6,C7 beta constraints} {Last modified Jul. 13 1999: fixed 2'-endo sugars} {Last modified Jul. 23 2000: commented for PDB submission} { enforce planarity of base amino groups } {Keep G amino groups in the plane of the base} assign (residue 1 and name h22)(residue 1 and name n2) (residue 1 and name c2)(residue 1 and name n3) 10 0 5 2 assign (residue 2 and name h22)(residue 2 and name n2) (residue 2 and name c2)(residue 2 and name n3) 10 0 5 2 assign (residue 5 and name h22)(residue 5 and name n2) (residue 5 and name c2)(residue 5 and name n3) 10 0 5 2 assign (residue 9 and name h22)(residue 9 and name n2) (residue 9 and name c2)(residue 9 and name n3) 10 0 5 2 assign (residue 10 and name h22)(residue 10 and name n2) (residue 10 and name c2)(residue 10 and name n3) 10 0 5 2 assign (residue 16 and name h22)(residue 16 and name n2) (residue 16 and name c2)(residue 16 and name n3) 10 0 5 2 assign (residue 17 and name h22)(residue 17 and name n2) (residue 17 and name c2)(residue 17 and name n3) 10 0 5 2 assign (residue 21 and name h22)(residue 21 and name n2) (residue 21 and name c2)(residue 21 and name n3) 10 0 5 2 assign (residue 22 and name h22)(residue 22 and name n2) (residue 22 and name c2)(residue 22 and name n3) 10 0 5 2 {Keep C amino groups in the plane of the base} assign (residue 7 and name h42)(residue 7 and name n4) (residue 7 and name c4)(residue 7 and name c5) 10 0 5 2 assign (residue 8 and name h42)(residue 8 and name n4) (residue 8 and name c4)(residue 8 and name c5) 10 0 5 2 assign (residue 12 and name h42)(residue 12 and name n4) (residue 12 and name c4)(residue 12 and name c5) 10 0 5 2 assign (residue 15 and name h42)(residue 15 and name n4) (residue 15 and name c4)(residue 15 and name c5) 10 0 5 2 assign (residue 19 and name h42)(residue 19 and name n4) (residue 19 and name c4)(residue 19 and name c5) 10 0 5 2 assign (residue 20 and name h42)(residue 20 and name n4) (residue 20 and name c4)(residue 20 and name c5) 10 0 5 2 assign (residue 23 and name h42)(residue 23 and name n4) (residue 23 and name c4)(residue 23 and name c5) 10 0 5 2 assign (residue 26 and name h42)(residue 26 and name n4) (residue 26 and name c4)(residue 26 and name c5) 10 0 5 2 assign (residue 27 and name h42)(residue 27 and name n4) (residue 27 and name c4)(residue 27 and name c5) 10 0 5 2 {Keep A amino groups in the plane of the base} assign (residue 3 and name h62)(residue 3 and name n6) (residue 3 and name c6)(residue 3 and name c5) 10 0 5 2 assign (residue 4 and name h62)(residue 4 and name n6) (residue 4 and name c6)(residue 4 and name c5) 10 0 5 2 assign (residue 18 and name h62)(residue 18 and name n6) (residue 18 and name c6)(residue 18 and name c5) 10 0 5 2 { ribose pucker constraints } {Make some nucleotides c3'-endo based on 2JH1'H2''} {modified to restrain v0, v1,v2, and v3 instead of delta} assign (residue 1 and name c4')(residue 1 and name o4') (residue 1 and name c1')(residue 1 and name c2') 2 0 5 2 assign (residue 1 and name o4')(residue 1 and name c1') (residue 1 and name c2')(residue 1 and name c3') 2 -22 5 2 assign (residue 1 and name c1')(residue 1 and name c2') (residue 1 and name c3')(residue 1 and name c4') 2 36 5 2 assign (residue 1 and name c2')(residue 1 and name c3') (residue 1 and name c4')(residue 1 and name o4') 2 -36 5 2 assign (residue 2 and name c4')(residue 2 and name o4') (residue 2 and name c1')(residue 2 and name c2') 2 0 5 2 assign (residue 2 and name o4')(residue 2 and name c1') (residue 2 and name c2')(residue 2 and name c3') 2 -22 5 2 assign (residue 2 and name c1')(residue 2 and name c2') (residue 2 and name c3')(residue 2 and name c4') 2 36 5 2 assign (residue 2 and name c2')(residue 2 and name c3') (residue 2 and name c4')(residue 2 and name o4') 2 -36 5 2 assign (residue 3 and name c4')(residue 3 and name o4') (residue 3 and name c1')(residue 3 and name c2') 2 0 5 2 assign (residue 3 and name o4')(residue 3 and name c1') (residue 3 and name c2')(residue 3 and name c3') 2 -22 5 2 assign (residue 3 and name c1')(residue 3 and name c2') (residue 3 and name c3')(residue 3 and name c4') 2 36 5 2 assign (residue 3 and name c2')(residue 3 and name c3') (residue 3 and name c4')(residue 3 and name o4') 2 -36 5 2 assign (residue 4 and name c4')(residue 4 and name o4') (residue 4 and name c1')(residue 4 and name c2') 2 0 5 2 assign (residue 4 and name o4')(residue 4 and name c1') (residue 4 and name c2')(residue 4 and name c3') 2 -22 5 2 assign (residue 4 and name c1')(residue 4 and name c2') (residue 4 and name c3')(residue 4 and name c4') 2 36 5 2 assign (residue 4 and name c2')(residue 4 and name c3') (residue 4 and name c4')(residue 4 and name o4') 2 -36 5 2 assign (residue 7 and name c4')(residue 7 and name o4') (residue 7 and name c1')(residue 7 and name c2') 2 0 5 2 assign (residue 7 and name o4')(residue 7 and name c1') (residue 7 and name c2')(residue 7 and name c3') 2 -22 5 2 assign (residue 7 and name c1')(residue 7 and name c2') (residue 7 and name c3')(residue 7 and name c4') 2 36 5 2 assign (residue 7 and name c2')(residue 7 and name c3') (residue 7 and name c4')(residue 7 and name o4') 2 -36 5 2 assign (residue 8 and name c4')(residue 8 and name o4') (residue 8 and name c1')(residue 8 and name c2') 2 0 5 2 assign (residue 8 and name o4')(residue 8 and name c1') (residue 8 and name c2')(residue 8 and name c3') 2 -22 5 2 assign (residue 8 and name c1')(residue 8 and name c2') (residue 8 and name c3')(residue 8 and name c4') 2 36 5 2 assign (residue 8 and name c2')(residue 8 and name c3') (residue 8 and name c4')(residue 8 and name o4') 2 -36 5 2 assign (residue 9 and name c4')(residue 9 and name o4') (residue 9 and name c1')(residue 9 and name c2') 2 0 5 2 assign (residue 9 and name o4')(residue 9 and name c1') (residue 9 and name c2')(residue 9 and name c3') 2 -22 5 2 assign (residue 9 and name c1')(residue 9 and name c2') (residue 9 and name c3')(residue 9 and name c4') 2 36 5 2 assign (residue 9 and name c2')(residue 9 and name c3') (residue 9 and name c4')(residue 9 and name o4') 2 -36 5 2 assign (residue 10 and name c4')(residue 10 and name o4') (residue 10 and name c1')(residue 10 and name c2') 2 0 5 2 assign (residue 10 and name o4')(residue 10 and name c1') (residue 10 and name c2')(residue 10 and name c3') 2 -22 5 2 assign (residue 10 and name c1')(residue 10 and name c2') (residue 10 and name c3')(residue 10 and name c4') 2 36 5 2 assign (residue 10 and name c2')(residue 10 and name c3') (residue 10 and name c4')(residue 10 and name o4') 2 -36 5 2 assign (residue 11 and name c4')(residue 11 and name o4') (residue 11 and name c1')(residue 11 and name c2') 2 0 5 2 assign (residue 11 and name o4')(residue 11 and name c1') (residue 11 and name c2')(residue 11 and name c3') 2 -22 5 2 assign (residue 11 and name c1')(residue 11 and name c2') (residue 11 and name c3')(residue 11 and name c4') 2 36 5 2 assign (residue 11 and name c2')(residue 11 and name c3') (residue 11 and name c4')(residue 11 and name o4') 2 -36 5 2 assign (residue 12 and name c4')(residue 12 and name o4') (residue 12 and name c1')(residue 12 and name c2') 2 0 5 2 assign (residue 12 and name o4')(residue 12 and name c1') (residue 12 and name c2')(residue 12 and name c3') 2 -22 5 2 assign (residue 12 and name c1')(residue 12 and name c2') (residue 12 and name c3')(residue 12 and name c4') 2 36 5 2 assign (residue 12 and name c2')(residue 12 and name c3') (residue 12 and name c4')(residue 12 and name o4') 2 -36 5 2 assign (residue 13 and name c4')(residue 13 and name o4') (residue 13 and name c1')(residue 13 and name c2') 2 0 5 2 assign (residue 13 and name o4')(residue 13 and name c1') (residue 13 and name c2')(residue 13 and name c3') 2 -22 5 2 assign (residue 13 and name c1')(residue 13 and name c2') (residue 13 and name c3')(residue 13 and name c4') 2 36 5 2 assign (residue 13 and name c2')(residue 13 and name c3') (residue 13 and name c4')(residue 13 and name o4') 2 -36 5 2 assign (residue 16 and name c4')(residue 16 and name o4') (residue 16 and name c1')(residue 16 and name c2') 2 0 5 2 assign (residue 16 and name o4')(residue 16 and name c1') (residue 16 and name c2')(residue 16 and name c3') 2 -22 5 2 assign (residue 16 and name c1')(residue 16 and name c2') (residue 16 and name c3')(residue 16 and name c4') 2 36 5 2 assign (residue 16 and name c2')(residue 16 and name c3') (residue 16 and name c4')(residue 16 and name o4') 2 -36 5 2 assign (residue 17 and name c4')(residue 17 and name o4') (residue 17 and name c1')(residue 17 and name c2') 2 0 5 2 assign (residue 17 and name o4')(residue 17 and name c1') (residue 17 and name c2')(residue 17 and name c3') 2 -22 5 2 assign (residue 17 and name c1')(residue 17 and name c2') (residue 17 and name c3')(residue 17 and name c4') 2 36 5 2 assign (residue 17 and name c2')(residue 17 and name c3') (residue 17 and name c4')(residue 17 and name o4') 2 -36 5 2 assign (residue 18 and name c4')(residue 18 and name o4') (residue 18 and name c1')(residue 18 and name c2') 2 0 5 2 assign (residue 18 and name o4')(residue 18 and name c1') (residue 18 and name c2')(residue 18 and name c3') 2 -22 5 2 assign (residue 18 and name c1')(residue 18 and name c2') (residue 18 and name c3')(residue 18 and name c4') 2 36 5 2 assign (residue 18 and name c2')(residue 18 and name c3') (residue 18 and name c4')(residue 18 and name o4') 2 -36 5 2 assign (residue 19 and name c4')(residue 19 and name o4') (residue 19 and name c1')(residue 19 and name c2') 2 0 5 2 assign (residue 19 and name o4')(residue 19 and name c1') (residue 19 and name c2')(residue 19 and name c3') 2 -22 5 2 assign (residue 19 and name c1')(residue 19 and name c2') (residue 19 and name c3')(residue 19 and name c4') 2 36 5 2 assign (residue 19 and name c2')(residue 19 and name c3') (residue 19 and name c4')(residue 19 and name o4') 2 -36 5 2 assign (residue 20 and name c4')(residue 20 and name o4') (residue 20 and name c1')(residue 20 and name c2') 2 0 5 2 assign (residue 20 and name o4')(residue 20 and name c1') (residue 20 and name c2')(residue 20 and name c3') 2 -22 5 2 assign (residue 20 and name c1')(residue 20 and name c2') (residue 20 and name c3')(residue 20 and name c4') 2 36 5 2 assign (residue 20 and name c2')(residue 20 and name c3') (residue 20 and name c4')(residue 20 and name o4') 2 -36 5 2 assign (residue 21 and name c4')(residue 21 and name o4') (residue 21 and name c1')(residue 21 and name c2') 2 0 5 2 assign (residue 21 and name o4')(residue 21 and name c1') (residue 21 and name c2')(residue 21 and name c3') 2 -22 5 2 assign (residue 21 and name c1')(residue 21 and name c2') (residue 21 and name c3')(residue 21 and name c4') 2 36 5 2 assign (residue 21 and name c2')(residue 21 and name c3') (residue 21 and name c4')(residue 21 and name o4') 2 -36 5 2 assign (residue 22 and name c4')(residue 22 and name o4') (residue 22 and name c1')(residue 22 and name c2') 2 0 5 2 assign (residue 22 and name o4')(residue 22 and name c1') (residue 22 and name c2')(residue 22 and name c3') 2 -22 5 2 assign (residue 22 and name c1')(residue 22 and name c2') (residue 22 and name c3')(residue 22 and name c4') 2 36 5 2 assign (residue 22 and name c2')(residue 22 and name c3') (residue 22 and name c4')(residue 22 and name o4') 2 -36 5 2 assign (residue 23 and name c4')(residue 23 and name o4') (residue 23 and name c1')(residue 23 and name c2') 2 0 5 2 assign (residue 23 and name o4')(residue 23 and name c1') (residue 23 and name c2')(residue 23 and name c3') 2 -22 5 2 assign (residue 23 and name c1')(residue 23 and name c2') (residue 23 and name c3')(residue 23 and name c4') 2 36 5 2 assign (residue 23 and name c2')(residue 23 and name c3') (residue 23 and name c4')(residue 23 and name o4') 2 -36 5 2 assign (residue 24 and name c4')(residue 24 and name o4') (residue 24 and name c1')(residue 24 and name c2') 2 0 5 2 assign (residue 24 and name o4')(residue 24 and name c1') (residue 24 and name c2')(residue 24 and name c3') 2 -22 5 2 assign (residue 24 and name c1')(residue 24 and name c2') (residue 24 and name c3')(residue 24 and name c4') 2 36 5 2 assign (residue 24 and name c2')(residue 24 and name c3') (residue 24 and name c4')(residue 24 and name o4') 2 -36 5 2 assign (residue 25 and name c4')(residue 25 and name o4') (residue 25 and name c1')(residue 25 and name c2') 2 0 5 2 assign (residue 25 and name o4')(residue 25 and name c1') (residue 25 and name c2')(residue 25 and name c3') 2 -22 5 2 assign (residue 25 and name c1')(residue 25 and name c2') (residue 25 and name c3')(residue 25 and name c4') 2 36 5 2 assign (residue 25 and name c2')(residue 25 and name c3') (residue 25 and name c4')(residue 25 and name o4') 2 -36 5 2 assign (residue 26 and name c4')(residue 26 and name o4') (residue 26 and name c1')(residue 26 and name c2') 2 0 5 2 assign (residue 26 and name o4')(residue 26 and name c1') (residue 26 and name c2')(residue 26 and name c3') 2 -22 5 2 assign (residue 26 and name c1')(residue 26 and name c2') (residue 26 and name c3')(residue 26 and name c4') 2 36 5 2 assign (residue 26 and name c2')(residue 26 and name c3') (residue 26 and name c4')(residue 26 and name o4') 2 -36 5 2 assign (residue 27 and name c4')(residue 27 and name o4') (residue 27 and name c1')(residue 27 and name c2') 2 0 5 2 assign (residue 27 and name o4')(residue 27 and name c1') (residue 27 and name c2')(residue 27 and name c3') 2 -22 5 2 assign (residue 27 and name c1')(residue 27 and name c2') (residue 27 and name c3')(residue 27 and name c4') 2 36 5 2 assign (residue 27 and name c2')(residue 27 and name c3') (residue 27 and name c4')(residue 27 and name o4') 2 -36 5 2 {restrain some nucleotides to be c2'-endo or in between, based on 2JH1'H2''} {in between} assign (residue 5 and name c4')(residue 5 and name o4') (residue 5 and name c1')(residue 5 and name c2') 2 -20 20 2 assign (residue 5 and name o4')(residue 5 and name c1') (residue 5 and name c2')(residue 5 and name c3') 2 15 25 2 assign (residue 5 and name c1')(residue 5 and name c2') (residue 5 and name c3')(residue 5 and name c4') 2 0 35 2 assign (residue 5 and name c2')(residue 5 and name c3') (residue 5 and name c4')(residue 5 and name o4') 2 0 40 2 assign (residue 6 and name c4')(residue 6 and name o4') (residue 6 and name c1')(residue 6 and name c2') 2 -20 20 2 assign (residue 6 and name o4')(residue 6 and name c1') (residue 6 and name c2')(residue 6 and name c3') 2 15 25 2 assign (residue 6 and name c1')(residue 6 and name c2') (residue 6 and name c3')(residue 6 and name c4') 2 0 35 2 assign (residue 6 and name c2')(residue 6 and name c3') (residue 6 and name c4')(residue 6 and name o4') 2 0 40 2 {c2'-endo} assign (residue 14 and name c4')(residue 14 and name o4') (residue 14 and name c1')(residue 14 and name c2') 2 -18 5 2 assign (residue 14 and name o4')(residue 14 and name c1') (residue 14 and name c2')(residue 14 and name c3') 2 34 5 2 assign (residue 14 and name c1')(residue 14 and name c2') (residue 14 and name c3')(residue 14 and name c4') 2 -37 5 2 assign (residue 14 and name c2')(residue 14 and name c3') (residue 14 and name c4')(residue 14 and name o4') 2 26 5 2 assign (residue 15 and name c4')(residue 15 and name o4') (residue 15 and name c1')(residue 15 and name c2') 2 -18 5 2 assign (residue 15 and name o4')(residue 15 and name c1') (residue 15 and name c2')(residue 15 and name c3') 2 34 5 2 assign (residue 15 and name c1')(residue 15 and name c2') (residue 15 and name c3')(residue 15 and name c4') 2 -37 5 2 assign (residue 15 and name c2')(residue 15 and name c3') (residue 15 and name c4')(residue 15 and name o4') 2 26 5 2 { base chi angle constraints } {restrain some nucleotides to keep purine bases anti} assign (residue 1 and name o4')(residue 1 and name c1') (residue 1 and name n9)(residue 1 and name c4) 2 -110 70 2 assign (residue 2 and name o4')(residue 2 and name c1') (residue 2 and name n9)(residue 2 and name c4) 2 -110 70 2 assign (residue 3 and name o4')(residue 3 and name c1') (residue 3 and name n9)(residue 3 and name c4) 2 -110 70 2 assign (residue 4 and name o4')(residue 4 and name c1') (residue 4 and name n9)(residue 4 and name c4) 2 -110 70 2 { G5: not sure about this one } assign (residue 5 and name o4')(residue 5 and name c1') (residue 5 and name n9)(residue 5 and name c4) 2 -110 70 2 assign (residue 9 and name o4')(residue 9 and name c1') (residue 9 and name n9)(residue 9 and name c4) 2 -110 70 2 assign (residue 10 and name o4')(residue 10 and name c1') (residue 10 and name n9)(residue 10 and name c4) 2 -110 70 2 { G16: syn! } assign (residue 17 and name o4')(residue 17 and name c1') (residue 17 and name n9)(residue 17 and name c4) 2 -110 70 2 assign (residue 18 and name o4')(residue 18 and name c1') (residue 18 and name n9)(residue 18 and name c4) 2 -110 70 2 assign (residue 21 and name o4')(residue 21 and name c1') (residue 21 and name n9)(residue 21 and name c4) 2 -110 70 2 assign (residue 22 and name o4')(residue 22 and name c1') (residue 22 and name n9)(residue 22 and name c4) 2 -110 70 2 {restrain some nucleotides to keep pyrimidine bases anti} assign (residue 7 and name o4')(residue 7 and name c1') (residue 7 and name n1)(residue 7 and name c2) 2 -110 70 2 assign (residue 8 and name o4')(residue 8 and name c1') (residue 8 and name n1)(residue 8 and name c2) 2 -110 70 2 assign (residue 11 and name o4')(residue 11 and name c1') (residue 11 and name n1)(residue 11 and name c2) 2 -110 70 2 assign (residue 12 and name o4')(residue 12 and name c1') (residue 12 and name n1)(residue 12 and name c2) 2 -110 70 2 assign (residue 13 and name o4')(residue 13 and name c1') (residue 13 and name n1)(residue 13 and name c2) 2 -110 70 2 { loop nucleotides UC in U(UC)G not constrained } assign (residue 19 and name o4')(residue 19 and name c1') (residue 19 and name n1)(residue 19 and name c2) 2 -110 70 2 assign (residue 20 and name o4')(residue 20 and name c1') (residue 20 and name n1)(residue 20 and name c2) 2 -110 70 2 assign (residue 23 and name o4')(residue 23 and name c1') (residue 23 and name n1)(residue 23 and name c2) 2 -110 70 2 assign (residue 24 and name o4')(residue 24 and name c1') (residue 24 and name n1)(residue 24 and name c2) 2 -110 70 2 assign (residue 25 and name o4')(residue 25 and name c1') (residue 25 and name n1)(residue 25 and name c2) 2 -110 70 2 assign (residue 26 and name o4')(residue 26 and name c1') (residue 26 and name n1)(residue 26 and name c2) 2 -110 70 2 assign (residue 27 and name o4')(residue 27 and name c1') (residue 27 and name n1)(residue 27 and name c2) 2 -110 70 2 { constrain G16 to syn based on strong H8H1' cross peak } assign (residue 16 and name o4')(residue 16 and name c1') (residue 16 and name n9)(residue 16 and name c4) 2 70 70 2 { phosphate backbone torsion angle constraints } { these constraints were used only during the refinement stage } { torsions beta through epsilon are used in a first high temperature } { dynamics stage, torsions alpha and zeta are added in for a second } { high temperature dynamics stage and final cooling } {backbone torsion angle beta} {used in refinement only} assign (residue 2 and name p)(residue 2 and name o5') (residue 2 and name c5')(residue 2 and name c4') 2 180 30 2 assign (residue 3 and name p)(residue 3 and name o5') (residue 3 and name c5')(residue 3 and name c4') 2 180 30 2 assign (residue 4 and name p)(residue 4 and name o5') (residue 4 and name c5')(residue 4 and name c4') 2 180 30 2 { G5: perhaps not 100% A-form, not constrained to be safe } { U6,C7: 3JPH5'/H5'' observed, non-trans } assign (residue 6 and name p)(residue 6 and name o5') (residue 6 and name c5')(residue 6 and name c4') 2 0 110 2 assign (residue 7 and name p)(residue 7 and name o5') (residue 7 and name c5')(residue 7 and name c4') 2 0 110 2 assign (residue 8 and name p)(residue 8 and name o5') (residue 8 and name c5')(residue 8 and name c4') 2 180 30 2 assign (residue 9 and name p)(residue 9 and name o5') (residue 9 and name c5')(residue 9 and name c4') 2 180 30 2 assign (residue 10 and name p)(residue 10 and name o5') (residue 10 and name c5')(residue 10 and name c4') 2 180 30 2 assign (residue 11 and name p)(residue 11 and name o5') (residue 11 and name c5')(residue 11 and name c4') 2 180 30 2 { C12-G16: C(UUCG) tetraloop, not constrained } { weak 3JPH5'/H5'' for G16, 3JPH4' for C15; C13,U13 probably trans } { G17: strong 3JPH5'/H5'', non-trans } assign (residue 17 and name p)(residue 17 and name o5') (residue 17 and name c5')(residue 17 and name c4') 2 0 110 2 assign (residue 18 and name p)(residue 18 and name o5') (residue 18 and name c5')(residue 18 and name c4') 2 180 30 2 assign (residue 19 and name p)(residue 19 and name o5') (residue 19 and name c5')(residue 19 and name c4') 2 180 30 2 assign (residue 20 and name p)(residue 20 and name o5') (residue 20 and name c5')(residue 20 and name c4') 2 180 30 2 assign (residue 21 and name p)(residue 21 and name o5') (residue 21 and name c5')(residue 21 and name c4') 2 180 30 2 assign (residue 22 and name p)(residue 22 and name o5') (residue 22 and name c5')(residue 22 and name c4') 2 180 30 2 assign (residue 23 and name p)(residue 23 and name o5') (residue 23 and name c5')(residue 23 and name c4') 2 180 30 2 assign (residue 24 and name p)(residue 24 and name o5') (residue 24 and name c5')(residue 24 and name c4') 2 180 30 2 assign (residue 25 and name p)(residue 25 and name o5') (residue 25 and name c5')(residue 25 and name c4') 2 180 30 2 assign (residue 26 and name p)(residue 26 and name o5') (residue 26 and name c5')(residue 26 and name c4') 2 180 30 2 {backbone torsion angle gamma} {used in refinement only} assign (residue 1 and name o5')(residue 1 and name c5') (residue 1 and name c4')(residue 1 and name c3') 2 55 30 2 assign (residue 2 and name o5')(residue 2 and name c5') (residue 2 and name c4')(residue 2 and name c3') 2 55 30 2 assign (residue 3 and name o5')(residue 3 and name c5') (residue 3 and name c4')(residue 3 and name c3') 2 55 30 2 assign (residue 4 and name o5')(residue 4 and name c5') (residue 4 and name c4')(residue 4 and name c3') 2 55 30 2 { G5-C7: around bulge loop, not constrained } assign (residue 8 and name o5')(residue 8 and name c5') (residue 8 and name c4')(residue 8 and name c3') 2 55 30 2 assign (residue 9 and name o5')(residue 9 and name c5') (residue 9 and name c4')(residue 9 and name c3') 2 55 30 2 assign (residue 10 and name o5')(residue 10 and name c5') (residue 10 and name c4')(residue 10 and name c3') 2 55 30 2 assign (residue 11 and name o5')(residue 11 and name c5') (residue 11 and name c4')(residue 11 and name c3') 2 55 30 2 { C12-G16: C(UUCG) tetraloop, not constrained } assign (residue 17 and name o5')(residue 17 and name c5') (residue 17 and name c4')(residue 17 and name c3') 2 55 30 2 assign (residue 18 and name o5')(residue 18 and name c5') (residue 18 and name c4')(residue 18 and name c3') 2 55 30 2 assign (residue 19 and name o5')(residue 19 and name c5') (residue 19 and name c4')(residue 19 and name c3') 2 55 30 2 assign (residue 20 and name o5')(residue 20 and name c5') (residue 20 and name c4')(residue 20 and name c3') 2 55 30 2 assign (residue 21 and name o5')(residue 21 and name c5') (residue 21 and name c4')(residue 21 and name c3') 2 55 30 2 assign (residue 22 and name o5')(residue 22 and name c5') (residue 22 and name c4')(residue 22 and name c3') 2 55 30 2 assign (residue 23 and name o5')(residue 23 and name c5') (residue 23 and name c4')(residue 23 and name c3') 2 55 30 2 assign (residue 24 and name o5')(residue 24 and name c5') (residue 24 and name c4')(residue 24 and name c3') 2 55 30 2 assign (residue 25 and name o5')(residue 25 and name c5') (residue 25 and name c4')(residue 25 and name c3') 2 55 30 2 assign (residue 26 and name o5')(residue 26 and name c5') (residue 26 and name c4')(residue 26 and name c3') 2 55 30 2 {backbone torsion angle epsilon} {used in refinement only} assign (residue 1 and name c4')(residue 1 and name c3') (residue 1 and name o3')(residue 2 and name p) 2 -155 30 2 assign (residue 2 and name c4')(residue 2 and name c3') (residue 2 and name o3')(residue 3 and name p) 2 -155 30 2 assign (residue 3 and name c4')(residue 3 and name c3') (residue 3 and name o3')(residue 4 and name p) 2 -155 30 2 assign (residue 4 and name c4')(residue 4 and name c3') (residue 4 and name o3')(residue 5 and name p) 2 -155 30 2 { G5-C7: around bulge loop, not constrained } assign (residue 8 and name c4')(residue 8 and name c3') (residue 8 and name o3')(residue 9 and name p) 2 -155 30 2 assign (residue 9 and name c4')(residue 9 and name c3') (residue 9 and name o3')(residue 10 and name p) 2 -155 30 2 assign (residue 10 and name c4')(residue 10 and name c3') (residue 10 and name o3')(residue 11 and name p) 2 -155 30 2 assign (residue 11 and name c4')(residue 11 and name c3') (residue 11 and name o3')(residue 12 and name p) 2 -155 30 2 { C12-G16: C(UUCG) tetraloop, not constrained } assign (residue 17 and name c4')(residue 17 and name c3') (residue 17 and name o3')(residue 18 and name p) 2 -155 30 2 assign (residue 18 and name c4')(residue 18 and name c3') (residue 18 and name o3')(residue 19 and name p) 2 -155 30 2 assign (residue 19 and name c4')(residue 19 and name c3') (residue 19 and name o3')(residue 20 and name p) 2 -155 30 2 assign (residue 20 and name c4')(residue 20 and name c3') (residue 20 and name o3')(residue 21 and name p) 2 -155 30 2 assign (residue 21 and name c4')(residue 21 and name c3') (residue 21 and name o3')(residue 22 and name p) 2 -155 30 2 assign (residue 22 and name c4')(residue 22 and name c3') (residue 22 and name o3')(residue 23 and name p) 2 -155 30 2 assign (residue 23 and name c4')(residue 23 and name c3') (residue 23 and name o3')(residue 24 and name p) 2 -155 30 2 assign (residue 24 and name c4')(residue 24 and name c3') (residue 24 and name o3')(residue 25 and name p) 2 -155 30 2 assign (residue 25 and name c4')(residue 25 and name c3') (residue 25 and name o3')(residue 26 and name p) 2 -155 30 2 assign (residue 26 and name c4')(residue 26 and name c3') (residue 26 and name o3')(residue 27 and name p) 2 -155 30 2 {backbone torsion angle alpha} {used in refinement only} assign (residue 1 and name o3')(residue 2 and name p) (residue 2 and name o5')(residue 2 and name c5') 2 -70 30 2 assign (residue 2 and name o3')(residue 3 and name p) (residue 3 and name o5')(residue 3 and name c5') 2 -70 30 2 assign (residue 3 and name o3')(residue 4 and name p) (residue 4 and name o5')(residue 4 and name c5') 2 -70 30 2 { G5-C7: around bulge loop, not constrained } assign (residue 7 and name o3')(residue 8 and name p) (residue 8 and name o5')(residue 8 and name c5') 2 -70 30 2 assign (residue 9 and name o3')(residue 10 and name p) (residue 10 and name o5')(residue 10 and name c5') 2 -70 30 2 assign (residue 10 and name o3')(residue 11 and name p) (residue 11 and name o5')(residue 11 and name c5') 2 -70 30 2 assign (residue 11 and name o3')(residue 12 and name p) (residue 12 and name o5')(residue 12 and name c5') 2 -70 30 2 { UUCG: taken from paper Cheong } assign (residue 12 and name o3')(residue 13 and name p) (residue 13 and name o5')(residue 13 and name c5') 2 -70 30 2 assign (residue 13 and name o3')(residue 14 and name p) (residue 14 and name o5')(residue 14 and name c5') 2 -70 30 2 { don't constrain U14, C15, G16: strong 3JPH4'/H5'/H5'', irregular CS } { UUCG: end } assign (residue 17 and name o3')(residue 18 and name p) (residue 18 and name o5')(residue 18 and name c5') 2 -70 30 2 assign (residue 18 and name o3')(residue 19 and name p) (residue 19 and name o5')(residue 19 and name c5') 2 -70 30 2 assign (residue 19 and name o3')(residue 20 and name p) (residue 20 and name o5')(residue 20 and name c5') 2 -70 30 2 assign (residue 20 and name o3')(residue 21 and name p) (residue 21 and name o5')(residue 21 and name c5') 2 -70 30 2 assign (residue 21 and name o3')(residue 22 and name p) (residue 22 and name o5')(residue 22 and name c5') 2 -70 30 2 { G22-C23: continuous strand of bulge, not constrained } assign (residue 23 and name o3')(residue 24 and name p) (residue 24 and name o5')(residue 24 and name c5') 2 -70 30 2 assign (residue 24 and name o3')(residue 25 and name p) (residue 25 and name o5')(residue 25 and name c5') 2 -70 30 2 assign (residue 25 and name o3')(residue 26 and name p) (residue 26 and name o5')(residue 26 and name c5') 2 -70 30 2 {backbone torsion angle zeta} {used in refinement only} assign (residue 1 and name c3')(residue 1 and name o3') (residue 2 and name p)(residue 2 and name o5') 2 -70 30 2 assign (residue 2 and name c3')(residue 2 and name o3') (residue 3 and name p)(residue 3 and name o5') 2 -70 30 2 assign (residue 3 and name c3')(residue 3 and name o3') (residue 4 and name p)(residue 4 and name o5') 2 -70 30 2 assign (residue 4 and name c3')(residue 4 and name o3') (residue 5 and name p)(residue 5 and name o5') 2 -70 30 2 { U6-C7: around bulge, not constrained } assign (residue 7 and name c3')(residue 7 and name o3') (residue 8 and name p)(residue 8 and name o5') 2 -70 30 2 assign (residue 8 and name c3')(residue 8 and name o3') (residue 9 and name p)(residue 9 and name o5') 2 -70 30 2 assign (residue 9 and name c3')(residue 9 and name o3') (residue 10 and name p)(residue 10 and name o5') 2 -70 30 2 assign (residue 10 and name c3')(residue 10 and name o3') (residue 11 and name p)(residue 11 and name o5') 2 -70 30 2 assign (residue 11 and name c3')(residue 11 and name o3') (residue 12 and name p)(residue 12 and name o5') 2 -70 30 2 { UUCG: taken from paper Cheong } assign (residue 12 and name c3')(residue 12 and name o3') (residue 13 and name p)(residue 13 and name o5') 2 -70 30 2 assign (residue 13 and name c3')(residue 13 and name o3') (residue 14 and name p)(residue 14 and name o5') 2 -70 30 2 { don't constrain U14, C15: strong 3JPH4'/H5'/H5'', irregular CS } { UUCG: end } { don't constrain this either; funny shift and strong 3JP/H5'/H5''} {assign (residue 16 and name c3')(residue 16 and name o3') (residue 17 and name p)(residue 17 and name o5') 2 -70 30 2} assign (residue 17 and name c3')(residue 17 and name o3') (residue 18 and name p)(residue 18 and name o5') 2 -70 30 2 assign (residue 18 and name c3')(residue 18 and name o3') (residue 19 and name p)(residue 19 and name o5') 2 -70 30 2 assign (residue 19 and name c3')(residue 19 and name o3') (residue 20 and name p)(residue 20 and name o5') 2 -70 30 2 assign (residue 20 and name c3')(residue 20 and name o3') (residue 21 and name p)(residue 21 and name o5') 2 -70 30 2 assign (residue 21 and name c3')(residue 21 and name o3') (residue 22 and name p)(residue 22 and name o5') 2 -70 30 2 { G22-C23: continuous strand of bulge, not constrained } assign (residue 23 and name c3')(residue 23 and name o3') (residue 24 and name p)(residue 24 and name o5') 2 -70 30 2 assign (residue 24 and name c3')(residue 24 and name o3') (residue 25 and name p)(residue 25 and name o5') 2 -70 30 2 assign (residue 25 and name c3')(residue 25 and name o3') (residue 26 and name p)(residue 26 and name o5') 2 -70 30 2 assign (residue 26 and name c3')(residue 26 and name o3') (residue 27 and name p)(residue 27 and name o5') 2 -70 30 2 Entry H atom name Submitted Coord H atom name 1 1H5* G 1 H5* G 1 -22.136 -9.015 -2.204 2 2H5* G 1 H5** G 1 -21.204 -9.829 -3.478 3 H4* G 1 H4* G 1 -20.674 -7.410 -3.307 4 H3* G 1 H3* G 1 -18.465 -9.426 -2.713 5 H2* G 1 H2* G 1 -17.006 -7.668 -2.111 6 2HO* G 1 2HO* G 1 -18.737 -5.734 -3.253 7 H1* G 1 H1* G 1 -18.899 -5.848 -1.098 8 H8 G 1 H8 G 1 -17.423 -9.384 -0.494 9 H1 G 1 H1 G 1 -17.673 -5.541 4.643 10 1H2 G 1 H21 G 1 -18.820 -3.701 4.151 11 2H2 G 1 H22 G 1 -19.346 -3.350 2.520 12 H5T G 1 H5T G 1 -19.809 -10.609 -1.872 13 1H5* G 2 H5* G 2 -18.175 -6.058 -6.408 14 2H5* G 2 H5** G 2 -16.582 -6.272 -7.164 15 H4* G 2 H4* G 2 -17.328 -3.879 -6.442 16 H3* G 2 H3* G 2 -14.597 -5.117 -5.895 17 H2* G 2 H2* G 2 -13.976 -3.180 -4.614 18 2HO* G 2 2HO* G 2 -15.649 -1.367 -4.668 19 H1* G 2 H1* G 2 -16.370 -2.798 -3.291 20 H8 G 2 H8 G 2 -15.752 -6.521 -3.615 21 H1 G 2 H1 G 2 -12.510 -3.767 1.192 22 1H2 G 2 H21 G 2 -12.705 -1.560 1.072 23 2H2 G 2 H22 G 2 -13.558 -0.773 -0.238 24 1H5* A 3 H5* A 3 -13.872 -1.338 -6.532 25 2H5* A 3 H5** A 3 -12.695 -0.987 -7.814 26 H4* A 3 H4* A 3 -11.967 0.108 -5.793 27 H3* A 3 H3* A 3 -10.321 -2.386 -6.455 28 H2* A 3 H2* A 3 -9.001 -1.921 -4.501 29 2HO* A 3 2HO* A 3 -9.817 0.343 -3.519 30 H1* A 3 H1* A 3 -11.097 -1.000 -2.879 31 H8 A 3 H8 A 3 -11.876 -4.193 -4.868 32 1H6 A 3 H61 A 3 -9.515 -7.236 -0.010 33 2H6 A 3 H62 A 3 -10.380 -7.400 -1.522 34 H2 A 3 H2 A 3 -8.797 -2.875 0.615 35 1H5* A 4 H5* A 4 -7.955 0.702 -4.963 36 2H5* A 4 H5** A 4 -6.566 1.001 -6.027 37 H4* A 4 H4* A 4 -5.831 0.736 -3.708 38 H3* A 4 H3* A 4 -5.053 -1.551 -5.586 39 H2* A 4 H2* A 4 -3.944 -2.590 -3.730 40 2HO* A 4 2HO* A 4 -4.215 -0.589 -1.874 41 H1* A 4 H1* A 4 -5.773 -1.791 -1.739 42 H8 A 4 H8 A 4 -7.178 -3.284 -5.016 43 1H6 A 4 H61 A 4 -6.981 -8.714 -2.027 44 2H6 A 4 H62 A 4 -7.594 -7.876 -3.435 45 H2 A 4 H2 A 4 -5.057 -5.635 0.576 46 1H5* G 5 H5* G 5 0.041 -1.092 -4.817 47 2H5* G 5 H5** G 5 -0.422 -2.790 -5.048 48 H4* G 5 H4* G 5 -0.132 -1.272 -2.440 49 H3* G 5 H3* G 5 1.876 -2.698 -3.617 50 H2* G 5 H2* G 5 0.592 -4.754 -3.952 51 2HO* G 5 2HO* G 5 2.521 -5.033 -2.545 52 H1* G 5 H1* G 5 -0.505 -4.567 -1.129 53 H8 G 5 H8 G 5 -2.483 -4.294 -4.415 54 H1 G 5 H1 G 5 -2.882 -10.003 -1.508 55 1H2 G 5 H21 G 5 -1.442 -10.099 0.182 56 2H2 G 5 H22 G 5 -0.428 -8.741 0.614 57 1H5* U 6 H5* U 6 3.403 -1.797 1.275 58 2H5* U 6 H5** U 6 5.127 -2.097 0.970 59 H4* U 6 H4* U 6 4.771 -4.249 1.590 60 H3* U 6 H3* U 6 3.296 -4.218 -1.041 61 H2* U 6 H2* U 6 1.626 -5.670 -0.248 62 2HO* U 6 2HO* U 6 2.292 -7.697 0.232 63 H1* U 6 H1* U 6 2.909 -5.976 2.459 64 H3 U 6 H3 U 6 -1.306 -7.535 3.315 65 H5 U 6 H5 U 6 -1.855 -3.479 2.292 66 H6 U 6 H6 U 6 0.496 -3.391 1.686 67 1H5* C 7 H5* C 7 8.895 -6.486 -1.838 68 2H5* C 7 H5** C 7 7.418 -6.125 -2.750 69 H4* C 7 H4* C 7 8.195 -8.627 -1.269 70 H3* C 7 H3* C 7 6.899 -8.047 -3.985 71 H2* C 7 H2* C 7 5.943 -10.242 -3.857 72 2HO* C 7 2HO* C 7 7.093 -11.819 -3.029 73 H1* C 7 H1* C 7 5.574 -10.270 -1.049 74 1H4 C 7 H41 C 7 -0.097 -9.558 -3.934 75 2H4 C 7 H42 C 7 -0.109 -7.913 -3.336 76 H5 C 7 H5 C 7 1.910 -6.834 -2.414 77 H6 C 7 H6 C 7 4.217 -7.210 -1.717 78 1H5* C 8 H5* C 8 9.562 -11.568 -4.307 79 2H5* C 8 H5** C 8 10.747 -11.322 -5.606 80 H4* C 8 H4* C 8 9.903 -13.537 -5.868 81 H3* C 8 H3* C 8 8.634 -11.601 -7.865 82 H2* C 8 H2* C 8 7.354 -13.458 -8.734 83 2HO* C 8 2HO* C 8 8.056 -15.566 -7.381 84 H1* C 8 H1* C 8 6.691 -14.582 -6.306 85 1H4 C 8 H41 C 8 1.852 -10.671 -7.684 86 2H4 C 8 H42 C 8 2.722 -9.304 -7.024 87 H5 C 8 H5 C 8 4.997 -9.515 -6.106 88 H6 C 8 H6 C 8 6.898 -11.024 -5.838 89 1H5* G 9 H5* G 9 9.873 -14.849 -9.698 90 2H5* G 9 H5** G 9 10.908 -14.813 -11.140 91 H4* G 9 H4* G 9 9.021 -16.153 -11.703 92 H3* G 9 H3* G 9 8.749 -13.329 -12.851 93 H2* G 9 H2* G 9 6.644 -14.013 -13.800 94 2HO* G 9 2HO* G 9 7.080 -16.695 -13.004 95 H1* G 9 H1* G 9 5.767 -15.528 -11.643 96 H8 G 9 H8 G 9 7.493 -12.223 -10.685 97 H1 G 9 H1 G 9 1.207 -11.739 -11.898 98 1H2 G 9 H21 G 9 0.433 -13.672 -12.671 99 2H2 G 9 H22 G 9 1.488 -15.029 -12.993 100 1H5* G 10 H5* G 10 7.550 -16.232 -15.553 101 2H5* G 10 H5** G 10 8.321 -16.069 -17.143 102 H4* G 10 H4* G 10 5.952 -16.321 -17.484 103 H3* G 10 H3* G 10 6.873 -13.425 -17.881 104 H2* G 10 H2* G 10 4.584 -12.930 -18.505 105 2HO* G 10 2HO* G 10 4.070 -15.735 -18.368 106 H1* G 10 H1* G 10 3.405 -14.357 -16.470 107 H8 G 10 H8 G 10 6.737 -12.589 -15.619 108 H1 G 10 H1 G 10 1.472 -9.030 -14.732 109 1H2 G 10 H21 G 10 -0.296 -10.065 -15.591 110 2H2 G 10 H22 G 10 -0.205 -11.714 -16.172 111 1H5* U 11 H5* U 11 4.640 -14.615 -21.812 112 2H5* U 11 H5** U 11 5.727 -13.875 -23.004 113 H4* U 11 H4* U 11 3.337 -13.218 -23.288 114 H3* U 11 H3* U 11 5.356 -11.010 -22.625 115 H2* U 11 H2* U 11 3.532 -9.460 -22.838 116 2HO* U 11 2HO* U 11 2.188 -11.680 -24.000 117 H1* U 11 H1* U 11 1.666 -10.955 -21.465 118 H3 U 11 H3 U 11 2.667 -7.691 -18.446 119 H5 U 11 H5 U 11 5.970 -10.314 -18.290 120 H6 U 11 H6 U 11 5.051 -11.469 -20.220 121 1H5* C 12 H5* C 12 2.288 -9.095 -24.882 122 2H5* C 12 H5** C 12 3.089 -8.943 -26.456 123 H4* C 12 H4* C 12 2.146 -6.823 -26.080 124 H3* C 12 H3* C 12 5.051 -6.702 -25.105 125 H2* C 12 H2* C 12 4.608 -4.326 -24.764 126 2HO* C 12 2HO* C 12 2.093 -4.754 -26.036 127 H1* C 12 H1* C 12 2.082 -4.713 -23.671 128 1H4 C 12 H41 C 12 6.356 -4.072 -18.945 129 2H4 C 12 H42 C 12 6.356 -5.811 -18.747 130 H5 C 12 H5 C 12 5.001 -7.287 -20.174 131 H6 C 12 H6 C 12 3.592 -7.381 -22.154 132 1H5* U 13 H5* U 13 5.236 -3.141 -26.687 133 2H5* U 13 H5** U 13 6.833 -3.062 -27.456 134 H4* U 13 H4* U 13 6.512 -1.603 -25.395 135 H3* U 13 H3* U 13 8.767 -3.680 -25.449 136 H2* U 13 H2* U 13 9.455 -2.765 -23.328 137 2HO* U 13 2HO* U 13 8.087 -0.777 -22.669 138 H1* U 13 H1* U 13 6.855 -2.371 -22.322 139 H3 U 13 H3 U 13 9.569 -5.616 -20.161 140 H5 U 13 H5 U 13 6.741 -7.579 -22.600 141 H6 U 13 H6 U 13 6.199 -5.424 -23.577 142 1H5* U 14 H5* U 14 11.114 0.252 -23.635 143 2H5* U 14 H5** U 14 9.702 0.209 -24.704 144 H4* U 14 H4* U 14 12.400 1.342 -25.435 145 H3* U 14 H3* U 14 10.619 2.751 -23.840 146 H2* U 14 H2* U 14 8.802 2.832 -25.430 147 2HO* U 14 2HO* U 14 9.005 4.956 -25.387 148 H1* U 14 H1* U 14 10.785 3.218 -27.703 149 H3 U 14 H3 U 14 7.370 2.923 -30.670 150 H5 U 14 H5 U 14 6.243 0.173 -27.676 151 H6 U 14 H6 U 14 8.257 0.783 -26.456 152 1H5* C 15 H5* C 15 11.847 6.249 -21.807 153 2H5* C 15 H5** C 15 13.096 5.118 -21.248 154 H4* C 15 H4* C 15 11.190 5.557 -19.625 155 H3* C 15 H3* C 15 12.527 3.160 -19.822 156 H2* C 15 H2* C 15 11.038 2.367 -21.628 157 2HO* C 15 2HO* C 15 11.233 0.815 -19.906 158 H1* C 15 H1* C 15 8.813 3.276 -19.727 159 1H4 C 15 H41 C 15 4.572 2.872 -24.435 160 2H4 C 15 H42 C 15 5.401 1.444 -25.016 161 H5 C 15 H5 C 15 7.569 0.732 -24.120 162 H6 C 15 H6 C 15 9.342 1.264 -22.558 163 1H5* G 16 H5* G 16 9.046 1.928 -14.930 164 2H5* G 16 H5** G 16 9.094 1.392 -16.622 165 H4* G 16 H4* G 16 8.558 4.287 -15.959 166 H3* G 16 H3* G 16 6.505 2.008 -15.925 167 H2* G 16 H2* G 16 4.953 3.600 -16.894 168 2HO* G 16 2HO* G 16 5.177 5.663 -16.455 169 H1* G 16 H1* G 16 6.730 4.598 -18.750 170 H8 G 16 H8 G 16 4.166 3.279 -19.365 171 H1 G 16 H1 G 16 7.812 -1.918 -20.234 172 1H2 G 16 H21 G 16 9.747 -1.691 -19.186 173 2H2 G 16 H22 G 16 10.229 -0.168 -18.466 174 1H5* G 17 H5* G 17 4.750 4.688 -14.540 175 2H5* G 17 H5** G 17 3.504 4.918 -13.300 176 H4* G 17 H4* G 17 2.255 4.586 -15.249 177 H3* G 17 H3* G 17 2.549 1.825 -13.946 178 H2* G 17 H2* G 17 1.146 1.015 -15.755 179 2HO* G 17 2HO* G 17 0.834 3.613 -16.807 180 H1* G 17 H1* G 17 2.438 2.412 -17.759 181 H8 G 17 H8 G 17 4.546 1.024 -14.830 182 H1 G 17 H1 G 17 3.961 -2.906 -19.840 183 1H2 G 17 H21 G 17 2.667 -2.005 -21.392 184 2H2 G 17 H22 G 17 1.755 -0.539 -21.085 185 1H5* A 18 H5* A 18 -1.321 2.239 -15.781 186 2H5* A 18 H5** A 18 -2.479 1.491 -14.666 187 H4* A 18 H4* A 18 -2.450 0.527 -16.998 188 H3* A 18 H3* A 18 -1.811 -1.355 -14.661 189 H2* A 18 H2* A 18 -1.822 -3.111 -16.316 190 2HO* A 18 2HO* A 18 -2.537 -1.800 -18.548 191 H1* A 18 H1* A 18 -0.623 -1.580 -18.359 192 H8 A 18 H8 A 18 1.249 -1.204 -15.066 193 1H6 A 18 H61 A 18 4.173 -6.459 -16.579 194 2H6 A 18 H62 A 18 4.193 -5.060 -15.529 195 H2 A 18 H2 A 18 0.847 -5.842 -19.496 196 1H5* C 19 H5* C 19 -4.193 -3.398 -17.317 197 2H5* C 19 H5** C 19 -5.692 -3.819 -16.466 198 H4* C 19 H4* C 19 -5.002 -5.826 -17.495 199 H3* C 19 H3* C 19 -4.051 -5.831 -14.582 200 H2* C 19 H2* C 19 -3.114 -8.003 -15.005 201 2HO* C 19 2HO* C 19 -4.438 -8.102 -17.516 202 H1* C 19 H1* C 19 -2.295 -7.509 -17.653 203 1H4 C 19 H41 C 19 3.062 -6.940 -14.246 204 2H4 C 19 H42 C 19 2.477 -5.498 -13.446 205 H5 C 19 H5 C 19 0.188 -4.656 -13.760 206 H6 C 19 H6 C 19 -1.906 -4.999 -14.960 207 1H5* C 20 H5* C 20 -6.531 -9.573 -15.556 208 2H5* C 20 H5** C 20 -7.492 -9.892 -14.098 209 H4* C 20 H4* C 20 -6.302 -11.909 -14.899 210 H3* C 20 H3* C 20 -5.422 -10.785 -12.189 211 H2* C 20 H2* C 20 -3.911 -12.662 -12.037 212 2HO* C 20 2HO* C 20 -4.151 -14.250 -13.933 213 H1* C 20 H1* C 20 -3.099 -12.637 -14.697 214 1H4 C 20 H41 C 20 1.367 -9.345 -11.552 215 2H4 C 20 H42 C 20 0.326 -7.944 -11.436 216 H5 C 20 H5 C 20 -2.016 -7.976 -12.195 217 H6 C 20 H6 C 20 -3.752 -9.346 -13.225 218 1H5* G 21 H5* G 21 -6.809 -15.287 -11.360 219 2H5* G 21 H5** G 21 -7.212 -15.136 -9.639 220 H4* G 21 H4* G 21 -5.412 -16.858 -10.317 221 H3* G 21 H3* G 21 -4.944 -14.785 -8.119 222 H2* G 21 H2* G 21 -2.778 -15.820 -7.791 223 2HO* G 21 2HO* G 21 -2.315 -17.830 -8.877 224 H1* G 21 H1* G 21 -2.179 -16.163 -10.473 225 H8 G 21 H8 G 21 -3.957 -12.846 -9.727 226 H1 G 21 H1 G 21 2.410 -12.706 -8.920 227 1H2 G 21 H21 G 21 3.246 -14.753 -9.136 228 2H2 G 21 H22 G 21 2.219 -16.155 -9.340 229 1H5* G 22 H5* G 22 -5.037 -18.693 -6.179 230 2H5* G 22 H5** G 22 -5.881 -18.735 -4.618 231 H4* G 22 H4* G 22 -3.526 -19.380 -4.368 232 H3* G 22 H3* G 22 -4.337 -16.720 -3.097 233 H2* G 22 H2* G 22 -2.064 -16.502 -2.307 234 2HO* G 22 2HO* G 22 -0.777 -18.623 -3.085 235 H1* G 22 H1* G 22 -0.823 -17.348 -4.627 236 H8 G 22 H8 G 22 -3.781 -15.323 -5.770 237 H1 G 22 H1 G 22 1.051 -11.715 -3.548 238 1H2 G 22 H21 G 22 2.580 -13.011 -2.588 239 2H2 G 22 H22 G 22 2.309 -14.720 -2.329 240 1H5* C 23 H5* C 23 -3.051 -18.524 0.390 241 2H5* C 23 H5** C 23 -4.192 -18.227 1.717 242 H4* C 23 H4* C 23 -2.056 -17.081 2.113 243 H3* C 23 H3* C 23 -4.452 -15.262 1.545 244 H2* C 23 H2* C 23 -2.967 -13.381 1.894 245 2HO* C 23 2HO* C 23 -1.913 -14.347 3.739 246 H1* C 23 H1* C 23 -0.832 -14.399 0.470 247 1H4 C 23 H41 C 23 -4.234 -10.863 -3.616 248 2H4 C 23 H42 C 23 -5.175 -12.265 -4.073 249 H5 C 23 H5 C 23 -5.022 -14.403 -2.858 250 H6 C 23 H6 C 23 -3.846 -15.603 -1.087 251 1H5* U 24 H5* U 24 -3.550 -13.994 5.818 252 2H5* U 24 H5** U 24 -5.132 -13.462 6.423 253 H4* U 24 H4* U 24 -3.219 -11.703 6.084 254 H3* U 24 H3* U 24 -6.108 -11.312 5.153 255 H2* U 24 H2* U 24 -5.452 -9.161 4.316 256 2HO* U 24 2HO* U 24 -2.908 -8.954 5.170 257 H1* U 24 H1* U 24 -2.864 -9.890 3.476 258 H3 U 24 H3 U 24 -5.388 -8.466 -0.112 259 H5 U 24 H5 U 24 -6.259 -12.568 0.364 260 H6 U 24 H6 U 24 -5.046 -12.505 2.471 261 1H5* U 25 H5* U 25 -4.652 -7.953 8.014 262 2H5* U 25 H5** U 25 -6.096 -7.235 8.755 263 H4* U 25 H4* U 25 -4.471 -5.676 7.481 264 H3* U 25 H3* U 25 -7.490 -5.712 7.008 265 H2* U 25 H2* U 25 -7.179 -3.987 5.348 266 2HO* U 25 2HO* U 25 -5.615 -2.574 5.589 267 H1* U 25 H1* U 25 -4.905 -5.041 4.178 268 H3 U 25 H3 U 25 -8.329 -5.679 1.194 269 H5 U 25 H5 U 25 -8.727 -8.814 3.990 270 H6 U 25 H6 U 25 -7.006 -7.738 5.329 271 1H5* C 26 H5* C 26 -6.734 -1.964 7.302 272 2H5* C 26 H5** C 26 -7.536 -1.008 8.565 273 H4* C 26 H4* C 26 -8.002 0.063 6.480 274 H3* C 26 H3* C 26 -10.390 -1.557 7.491 275 H2* C 26 H2* C 26 -11.588 -0.917 5.521 276 2HO* C 26 2HO* C 26 -11.346 1.047 4.751 277 H1* C 26 H1* C 26 -9.378 -0.849 3.754 278 1H4 C 26 H41 C 26 -12.556 -6.161 2.272 279 2H4 C 26 H42 C 26 -11.957 -6.979 3.697 280 H5 C 26 H5 C 26 -10.444 -5.879 5.304 281 H6 C 26 H6 C 26 -9.423 -3.753 5.934 282 1H5* C 27 H5* C 27 -14.082 1.695 8.932 283 2H5* C 27 H5** C 27 -13.946 -0.075 8.948 284 H4* C 27 H4* C 27 -15.178 1.727 6.863 285 H3* C 27 H3* C 27 -16.042 -0.841 8.278 286 H2* C 27 H2* C 27 -17.478 -1.260 6.420 287 2HO* C 27 2HO* C 27 -16.891 1.413 5.589 288 H1* C 27 H1* C 27 -15.654 -0.385 4.477 289 1H4 C 27 H41 C 27 -15.486 -6.787 4.943 290 2H4 C 27 H42 C 27 -13.908 -6.633 5.684 291 H5 C 27 H5 C 27 -13.010 -4.460 6.424 292 H6 C 27 H6 C 27 -13.418 -2.053 6.468 293 H3T C 27 H3T C 27 -17.030 1.794 7.880