data_wwPDB_remediated_restraints_file_for_PDB_entry_1gxx # This wwPDB archive file contains, for PDB entry 1gxx: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389–396. save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_1gxx _Entry.Title "wwPDB remediated NMR restraints for PDB entry 1gxx" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 1gxx" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_1gxx _Assembly.ID 1 _Assembly.Name 1gxx _Assembly.Number_of_components 2 _Assembly.Organic_ligands 5 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "all free" _Assembly.Molecular_mass 14403.1772 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 "LYSOZYME C" 2 $LYSOZYME_C A . no . . . . . . rr_1gxx 1 2 water 1 $water B . no . . . . . . rr_1gxx 1 stop_ save_ save_water _Entity.Sf_category entity _Entity.Sf_framecode water _Entity.Entry_ID rr_1gxx _Entity.ID 1 _Entity.Name water _Entity.Type non-polymer _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_chirality yes _Entity.Nstd_linkage no _Entity.Nonpolymer_comp_ID HOH _Entity.Nonpolymer_comp_label $chem_comp_HOH _Entity.Number_of_monomers 1 _Entity.Paramagnetic no _Entity.Thiol_state "not present" _Entity.Parent_entity_ID 1 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . HOH . rr_1gxx 1 2 . HOH . rr_1gxx 1 3 . HOH . rr_1gxx 1 4 . HOH . rr_1gxx 1 5 . HOH . rr_1gxx 1 stop_ save_ save_LYSOZYME_C _Entity.Sf_category entity _Entity.Sf_framecode LYSOZYME_C _Entity.Entry_ID rr_1gxx _Entity.ID 2 _Entity.Name LYSOZYME_C _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code ; KVFGRCELAAAMKRHGLDNY RGYSLGNWVCAAKFESNFNT QATNRNTDGSTDYGILQINS RWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVS DGNGMNAWVAWRNRCKGTDV QAWIRGCRL ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 129 _Entity.Paramagnetic no _Entity.Thiol_state "all free" _Entity.Parent_entity_ID 2 _Entity.Formula_weight 14313.1012 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . LYS . rr_1gxx 2 2 . VAL . rr_1gxx 2 3 . PHE . rr_1gxx 2 4 . GLY . rr_1gxx 2 5 . ARG . rr_1gxx 2 6 . CYS . rr_1gxx 2 7 . GLU . rr_1gxx 2 8 . LEU . rr_1gxx 2 9 . ALA . rr_1gxx 2 10 . ALA . rr_1gxx 2 11 . ALA . rr_1gxx 2 12 . MET . rr_1gxx 2 13 . LYS . rr_1gxx 2 14 . ARG . rr_1gxx 2 15 . HIS . rr_1gxx 2 16 . GLY . rr_1gxx 2 17 . LEU . rr_1gxx 2 18 . ASP . rr_1gxx 2 19 . ASN . rr_1gxx 2 20 . TYR . rr_1gxx 2 21 . ARG . rr_1gxx 2 22 . GLY . rr_1gxx 2 23 . TYR . rr_1gxx 2 24 . SER . rr_1gxx 2 25 . LEU . rr_1gxx 2 26 . GLY . rr_1gxx 2 27 . ASN . rr_1gxx 2 28 . TRP . rr_1gxx 2 29 . VAL . rr_1gxx 2 30 . CYS . rr_1gxx 2 31 . ALA . rr_1gxx 2 32 . ALA . rr_1gxx 2 33 . LYS . rr_1gxx 2 34 . PHE . rr_1gxx 2 35 . GLU . rr_1gxx 2 36 . SER . rr_1gxx 2 37 . ASN . rr_1gxx 2 38 . PHE . rr_1gxx 2 39 . ASN . rr_1gxx 2 40 . THR . rr_1gxx 2 41 . GLN . rr_1gxx 2 42 . ALA . rr_1gxx 2 43 . THR . rr_1gxx 2 44 . ASN . rr_1gxx 2 45 . ARG . rr_1gxx 2 46 . ASN . rr_1gxx 2 47 . THR . rr_1gxx 2 48 . ASP . rr_1gxx 2 49 . GLY . rr_1gxx 2 50 . SER . rr_1gxx 2 51 . THR . rr_1gxx 2 52 . ASP . rr_1gxx 2 53 . TYR . rr_1gxx 2 54 . GLY . rr_1gxx 2 55 . ILE . rr_1gxx 2 56 . LEU . rr_1gxx 2 57 . GLN . rr_1gxx 2 58 . ILE . rr_1gxx 2 59 . ASN . rr_1gxx 2 60 . SER . rr_1gxx 2 61 . ARG . rr_1gxx 2 62 . TRP . rr_1gxx 2 63 . TRP . rr_1gxx 2 64 . CYS . rr_1gxx 2 65 . ASN . rr_1gxx 2 66 . ASP . rr_1gxx 2 67 . GLY . rr_1gxx 2 68 . ARG . rr_1gxx 2 69 . THR . rr_1gxx 2 70 . PRO . rr_1gxx 2 71 . GLY . rr_1gxx 2 72 . SER . rr_1gxx 2 73 . ARG . rr_1gxx 2 74 . ASN . rr_1gxx 2 75 . LEU . rr_1gxx 2 76 . CYS . rr_1gxx 2 77 . ASN . rr_1gxx 2 78 . ILE . rr_1gxx 2 79 . PRO . rr_1gxx 2 80 . CYS . rr_1gxx 2 81 . SER . rr_1gxx 2 82 . ALA . rr_1gxx 2 83 . LEU . rr_1gxx 2 84 . LEU . rr_1gxx 2 85 . SER . rr_1gxx 2 86 . SER . rr_1gxx 2 87 . ASP . rr_1gxx 2 88 . ILE . rr_1gxx 2 89 . THR . rr_1gxx 2 90 . ALA . rr_1gxx 2 91 . SER . rr_1gxx 2 92 . VAL . rr_1gxx 2 93 . ASN . rr_1gxx 2 94 . CYS . rr_1gxx 2 95 . ALA . rr_1gxx 2 96 . LYS . rr_1gxx 2 97 . LYS . rr_1gxx 2 98 . ILE . rr_1gxx 2 99 . VAL . rr_1gxx 2 100 . SER . rr_1gxx 2 101 . ASP . rr_1gxx 2 102 . GLY . rr_1gxx 2 103 . ASN . rr_1gxx 2 104 . GLY . rr_1gxx 2 105 . MET . rr_1gxx 2 106 . ASN . rr_1gxx 2 107 . ALA . rr_1gxx 2 108 . TRP . rr_1gxx 2 109 . VAL . rr_1gxx 2 110 . ALA . rr_1gxx 2 111 . TRP . rr_1gxx 2 112 . ARG . rr_1gxx 2 113 . ASN . rr_1gxx 2 114 . ARG . rr_1gxx 2 115 . CYS . rr_1gxx 2 116 . LYS . rr_1gxx 2 117 . GLY . rr_1gxx 2 118 . THR . rr_1gxx 2 119 . ASP . rr_1gxx 2 120 . VAL . rr_1gxx 2 121 . GLN . rr_1gxx 2 122 . ALA . rr_1gxx 2 123 . TRP . rr_1gxx 2 124 . ILE . rr_1gxx 2 125 . ARG . rr_1gxx 2 126 . GLY . rr_1gxx 2 127 . CYS . rr_1gxx 2 128 . ARG . rr_1gxx 2 129 . LEU . rr_1gxx 2 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . LYS 1 1 rr_1gxx 2 . VAL 2 2 rr_1gxx 2 . PHE 3 3 rr_1gxx 2 . GLY 4 4 rr_1gxx 2 . ARG 5 5 rr_1gxx 2 . CYS 6 6 rr_1gxx 2 . GLU 7 7 rr_1gxx 2 . LEU 8 8 rr_1gxx 2 . ALA 9 9 rr_1gxx 2 . ALA 10 10 rr_1gxx 2 . ALA 11 11 rr_1gxx 2 . MET 12 12 rr_1gxx 2 . LYS 13 13 rr_1gxx 2 . ARG 14 14 rr_1gxx 2 . HIS 15 15 rr_1gxx 2 . GLY 16 16 rr_1gxx 2 . LEU 17 17 rr_1gxx 2 . ASP 18 18 rr_1gxx 2 . ASN 19 19 rr_1gxx 2 . TYR 20 20 rr_1gxx 2 . ARG 21 21 rr_1gxx 2 . GLY 22 22 rr_1gxx 2 . TYR 23 23 rr_1gxx 2 . SER 24 24 rr_1gxx 2 . LEU 25 25 rr_1gxx 2 . GLY 26 26 rr_1gxx 2 . ASN 27 27 rr_1gxx 2 . TRP 28 28 rr_1gxx 2 . VAL 29 29 rr_1gxx 2 . CYS 30 30 rr_1gxx 2 . ALA 31 31 rr_1gxx 2 . ALA 32 32 rr_1gxx 2 . LYS 33 33 rr_1gxx 2 . PHE 34 34 rr_1gxx 2 . GLU 35 35 rr_1gxx 2 . SER 36 36 rr_1gxx 2 . ASN 37 37 rr_1gxx 2 . PHE 38 38 rr_1gxx 2 . ASN 39 39 rr_1gxx 2 . THR 40 40 rr_1gxx 2 . GLN 41 41 rr_1gxx 2 . ALA 42 42 rr_1gxx 2 . THR 43 43 rr_1gxx 2 . ASN 44 44 rr_1gxx 2 . ARG 45 45 rr_1gxx 2 . ASN 46 46 rr_1gxx 2 . THR 47 47 rr_1gxx 2 . ASP 48 48 rr_1gxx 2 . GLY 49 49 rr_1gxx 2 . SER 50 50 rr_1gxx 2 . THR 51 51 rr_1gxx 2 . ASP 52 52 rr_1gxx 2 . TYR 53 53 rr_1gxx 2 . GLY 54 54 rr_1gxx 2 . ILE 55 55 rr_1gxx 2 . LEU 56 56 rr_1gxx 2 . GLN 57 57 rr_1gxx 2 . ILE 58 58 rr_1gxx 2 . ASN 59 59 rr_1gxx 2 . SER 60 60 rr_1gxx 2 . ARG 61 61 rr_1gxx 2 . TRP 62 62 rr_1gxx 2 . TRP 63 63 rr_1gxx 2 . CYS 64 64 rr_1gxx 2 . ASN 65 65 rr_1gxx 2 . ASP 66 66 rr_1gxx 2 . GLY 67 67 rr_1gxx 2 . ARG 68 68 rr_1gxx 2 . THR 69 69 rr_1gxx 2 . PRO 70 70 rr_1gxx 2 . GLY 71 71 rr_1gxx 2 . SER 72 72 rr_1gxx 2 . ARG 73 73 rr_1gxx 2 . ASN 74 74 rr_1gxx 2 . LEU 75 75 rr_1gxx 2 . CYS 76 76 rr_1gxx 2 . ASN 77 77 rr_1gxx 2 . ILE 78 78 rr_1gxx 2 . PRO 79 79 rr_1gxx 2 . CYS 80 80 rr_1gxx 2 . SER 81 81 rr_1gxx 2 . ALA 82 82 rr_1gxx 2 . LEU 83 83 rr_1gxx 2 . LEU 84 84 rr_1gxx 2 . SER 85 85 rr_1gxx 2 . SER 86 86 rr_1gxx 2 . ASP 87 87 rr_1gxx 2 . ILE 88 88 rr_1gxx 2 . THR 89 89 rr_1gxx 2 . ALA 90 90 rr_1gxx 2 . SER 91 91 rr_1gxx 2 . VAL 92 92 rr_1gxx 2 . ASN 93 93 rr_1gxx 2 . CYS 94 94 rr_1gxx 2 . ALA 95 95 rr_1gxx 2 . LYS 96 96 rr_1gxx 2 . LYS 97 97 rr_1gxx 2 . ILE 98 98 rr_1gxx 2 . VAL 99 99 rr_1gxx 2 . SER 100 100 rr_1gxx 2 . ASP 101 101 rr_1gxx 2 . GLY 102 102 rr_1gxx 2 . ASN 103 103 rr_1gxx 2 . GLY 104 104 rr_1gxx 2 . MET 105 105 rr_1gxx 2 . ASN 106 106 rr_1gxx 2 . ALA 107 107 rr_1gxx 2 . TRP 108 108 rr_1gxx 2 . VAL 109 109 rr_1gxx 2 . ALA 110 110 rr_1gxx 2 . TRP 111 111 rr_1gxx 2 . ARG 112 112 rr_1gxx 2 . ASN 113 113 rr_1gxx 2 . ARG 114 114 rr_1gxx 2 . CYS 115 115 rr_1gxx 2 . LYS 116 116 rr_1gxx 2 . GLY 117 117 rr_1gxx 2 . THR 118 118 rr_1gxx 2 . ASP 119 119 rr_1gxx 2 . VAL 120 120 rr_1gxx 2 . GLN 121 121 rr_1gxx 2 . ALA 122 122 rr_1gxx 2 . TRP 123 123 rr_1gxx 2 . ILE 124 124 rr_1gxx 2 . ARG 125 125 rr_1gxx 2 . GLY 126 126 rr_1gxx 2 . CYS 127 127 rr_1gxx 2 . ARG 128 128 rr_1gxx 2 . LEU 129 129 rr_1gxx 2 stop_ save_ save_chem_comp_HOH _Chem_comp.Sf_category chem_comp _Chem_comp.Sf_framecode chem_comp_HOH _Chem_comp.Entry_ID rr_1gxx _Chem_comp.ID HOH _Chem_comp.Name WATER _Chem_comp.Type water _Chem_comp.PDB_code HOH _Chem_comp.Formal_charge 0 _Chem_comp.Paramagnetic no _Chem_comp.Aromatic no _Chem_comp.Formula "H2 O" _Chem_comp.Formula_weight 18.0152 save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_1gxx _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 1 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_1gxx _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 1gxx.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_1gxx 1 1 1gxx.mr . . XPLOR/CNS 2 "chemical shift" "Not applicable" "Not applicable" 0 rr_1gxx 1 1 1gxx.mr . . "MR format" 3 "nomenclature mapping" "Not applicable" "Not applicable" 0 rr_1gxx 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_1gxx _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER HYDROLASE 15-APR-02 1GXX *TITLE SOLUTION STRUCTURE OF LYSOZYME AT LOW AND HIGH PRESSURE *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: LYSOZYME C; *COMPND 3 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C, ALLERGEN GAL D 4; *COMPND 4 CHAIN: A; *COMPND 5 EC: 3.2.1.17 *SOURCE MOL_ID: 1; *SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; *SOURCE 3 ORGANISM_COMMON: CHICKEN; *SOURCE 4 ORGAN: EGG-WHITE *KEYWDS HYDROLASE, SACCHARIDE DEGRADATION,GLYCOSIDASE, BACTERIOLYTIC *KEYWDS 2 ENZYME, ALLERGEN, EGG-WHITE, SIGNAL *EXPDTA NMR, MINIMIZED AVERAGE STRUCTURE *AUTHOR M.REFAEE,K.AKASAKA,M.WILLIAMSON *REVDAT 1 15-APR-02 1GXX 0 ; save_