data_wwPDB_remediated_restraints_file_for_PDB_entry_1haa # This wwPDB archive file contains, for PDB entry 1haa: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389–396. save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_1haa _Entry.Title "wwPDB remediated NMR restraints for PDB entry 1haa" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 1haa" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_1haa _Assembly.ID 1 _Assembly.Name 1haa _Assembly.Number_of_components 2 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "all free" _Assembly.Molecular_mass 9691.9761 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 "ALPHA BUNGAROTOXIN" 1 $ALPHA_BUNGAROTOXIN A . no . . . . . . rr_1haa 1 2 PEPTIDE 2 $PEPTIDE B . no . . . . . . rr_1haa 1 stop_ save_ save_ALPHA_BUNGAROTOXIN _Entity.Sf_category entity _Entity.Sf_framecode ALPHA_BUNGAROTOXIN _Entity.Entry_ID rr_1haa _Entity.ID 1 _Entity.Name ALPHA_BUNGAROTOXIN _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code ; IVCHTTATSPISAVTCPPGE NLCYRKMWCDAFCSSRGKVV ELGCAATCPSKKPYEEVTCC STDKCNPHPKQRPG ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 74 _Entity.Paramagnetic no _Entity.Thiol_state "all free" _Entity.Parent_entity_ID 1 _Entity.Formula_weight 7989.1835 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . ILE . rr_1haa 1 2 . VAL . rr_1haa 1 3 . CYS . rr_1haa 1 4 . HIS . rr_1haa 1 5 . THR . rr_1haa 1 6 . THR . rr_1haa 1 7 . ALA . rr_1haa 1 8 . THR . rr_1haa 1 9 . SER . rr_1haa 1 10 . PRO . rr_1haa 1 11 . ILE . rr_1haa 1 12 . SER . rr_1haa 1 13 . ALA . rr_1haa 1 14 . VAL . rr_1haa 1 15 . THR . rr_1haa 1 16 . CYS . rr_1haa 1 17 . PRO . rr_1haa 1 18 . PRO . rr_1haa 1 19 . GLY . rr_1haa 1 20 . GLU . rr_1haa 1 21 . ASN . rr_1haa 1 22 . LEU . rr_1haa 1 23 . CYS . rr_1haa 1 24 . TYR . rr_1haa 1 25 . ARG . rr_1haa 1 26 . LYS . rr_1haa 1 27 . MET . rr_1haa 1 28 . TRP . rr_1haa 1 29 . CYS . rr_1haa 1 30 . ASP . rr_1haa 1 31 . ALA . rr_1haa 1 32 . PHE . rr_1haa 1 33 . CYS . rr_1haa 1 34 . SER . rr_1haa 1 35 . SER . rr_1haa 1 36 . ARG . rr_1haa 1 37 . GLY . rr_1haa 1 38 . LYS . rr_1haa 1 39 . VAL . rr_1haa 1 40 . VAL . rr_1haa 1 41 . GLU . rr_1haa 1 42 . LEU . rr_1haa 1 43 . GLY . rr_1haa 1 44 . CYS . rr_1haa 1 45 . ALA . rr_1haa 1 46 . ALA . rr_1haa 1 47 . THR . rr_1haa 1 48 . CYS . rr_1haa 1 49 . PRO . rr_1haa 1 50 . SER . rr_1haa 1 51 . LYS . rr_1haa 1 52 . LYS . rr_1haa 1 53 . PRO . rr_1haa 1 54 . TYR . rr_1haa 1 55 . GLU . rr_1haa 1 56 . GLU . rr_1haa 1 57 . VAL . rr_1haa 1 58 . THR . rr_1haa 1 59 . CYS . rr_1haa 1 60 . CYS . rr_1haa 1 61 . SER . rr_1haa 1 62 . THR . rr_1haa 1 63 . ASP . rr_1haa 1 64 . LYS . rr_1haa 1 65 . CYS . rr_1haa 1 66 . ASN . rr_1haa 1 67 . PRO . rr_1haa 1 68 . HIS . rr_1haa 1 69 . PRO . rr_1haa 1 70 . LYS . rr_1haa 1 71 . GLN . rr_1haa 1 72 . ARG . rr_1haa 1 73 . PRO . rr_1haa 1 74 . GLY . rr_1haa 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . ILE 1 1 rr_1haa 1 . VAL 2 2 rr_1haa 1 . CYS 3 3 rr_1haa 1 . HIS 4 4 rr_1haa 1 . THR 5 5 rr_1haa 1 . THR 6 6 rr_1haa 1 . ALA 7 7 rr_1haa 1 . THR 8 8 rr_1haa 1 . SER 9 9 rr_1haa 1 . PRO 10 10 rr_1haa 1 . ILE 11 11 rr_1haa 1 . SER 12 12 rr_1haa 1 . ALA 13 13 rr_1haa 1 . VAL 14 14 rr_1haa 1 . THR 15 15 rr_1haa 1 . CYS 16 16 rr_1haa 1 . PRO 17 17 rr_1haa 1 . PRO 18 18 rr_1haa 1 . GLY 19 19 rr_1haa 1 . GLU 20 20 rr_1haa 1 . ASN 21 21 rr_1haa 1 . LEU 22 22 rr_1haa 1 . CYS 23 23 rr_1haa 1 . TYR 24 24 rr_1haa 1 . ARG 25 25 rr_1haa 1 . LYS 26 26 rr_1haa 1 . MET 27 27 rr_1haa 1 . TRP 28 28 rr_1haa 1 . CYS 29 29 rr_1haa 1 . ASP 30 30 rr_1haa 1 . ALA 31 31 rr_1haa 1 . PHE 32 32 rr_1haa 1 . CYS 33 33 rr_1haa 1 . SER 34 34 rr_1haa 1 . SER 35 35 rr_1haa 1 . ARG 36 36 rr_1haa 1 . GLY 37 37 rr_1haa 1 . LYS 38 38 rr_1haa 1 . VAL 39 39 rr_1haa 1 . VAL 40 40 rr_1haa 1 . GLU 41 41 rr_1haa 1 . LEU 42 42 rr_1haa 1 . GLY 43 43 rr_1haa 1 . CYS 44 44 rr_1haa 1 . ALA 45 45 rr_1haa 1 . ALA 46 46 rr_1haa 1 . THR 47 47 rr_1haa 1 . CYS 48 48 rr_1haa 1 . PRO 49 49 rr_1haa 1 . SER 50 50 rr_1haa 1 . LYS 51 51 rr_1haa 1 . LYS 52 52 rr_1haa 1 . PRO 53 53 rr_1haa 1 . TYR 54 54 rr_1haa 1 . GLU 55 55 rr_1haa 1 . GLU 56 56 rr_1haa 1 . VAL 57 57 rr_1haa 1 . THR 58 58 rr_1haa 1 . CYS 59 59 rr_1haa 1 . CYS 60 60 rr_1haa 1 . SER 61 61 rr_1haa 1 . THR 62 62 rr_1haa 1 . ASP 63 63 rr_1haa 1 . LYS 64 64 rr_1haa 1 . CYS 65 65 rr_1haa 1 . ASN 66 66 rr_1haa 1 . PRO 67 67 rr_1haa 1 . HIS 68 68 rr_1haa 1 . PRO 69 69 rr_1haa 1 . LYS 70 70 rr_1haa 1 . GLN 71 71 rr_1haa 1 . ARG 72 72 rr_1haa 1 . PRO 73 73 rr_1haa 1 . GLY 74 74 rr_1haa 1 stop_ save_ save_PEPTIDE _Entity.Sf_category entity _Entity.Sf_framecode PEPTIDE _Entity.Entry_ID rr_1haa _Entity.ID 2 _Entity.Name PEPTIDE _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID B _Entity.Polymer_seq_one_letter_code WRYYESSLEPYPD _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 13 _Entity.Paramagnetic no _Entity.Thiol_state "not present" _Entity.Parent_entity_ID 2 _Entity.Formula_weight 1702.7926 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . TRP . rr_1haa 2 2 . ARG . rr_1haa 2 3 . TYR . rr_1haa 2 4 . TYR . rr_1haa 2 5 . GLU . rr_1haa 2 6 . SER . rr_1haa 2 7 . SER . rr_1haa 2 8 . LEU . rr_1haa 2 9 . GLU . rr_1haa 2 10 . PRO . rr_1haa 2 11 . TYR . rr_1haa 2 12 . PRO . rr_1haa 2 13 . ASP . rr_1haa 2 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . TRP 1 1 rr_1haa 2 . ARG 2 2 rr_1haa 2 . TYR 3 3 rr_1haa 2 . TYR 4 4 rr_1haa 2 . GLU 5 5 rr_1haa 2 . SER 6 6 rr_1haa 2 . SER 7 7 rr_1haa 2 . LEU 8 8 rr_1haa 2 . GLU 9 9 rr_1haa 2 . PRO 10 10 rr_1haa 2 . TYR 11 11 rr_1haa 2 . PRO 12 12 rr_1haa 2 . ASP 13 13 rr_1haa 2 stop_ save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_1haa _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 1 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_1haa _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 1haa.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_1haa 1 1 1haa.mr . . "MR format" 2 "nomenclature mapping" "Not applicable" "Not applicable" 0 rr_1haa 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_1haa _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER COMPLEX (TOXIN/PEPTIDE) 04-APR-01 1HAA *TITLE A BETA-HAIRPIN STRUCTURE IN A 13-MER PEPTIDE THAT BINDS *TITLE 2 A-BUNGAROTOXIN WITH HIGH AFFINITY AND NEUTRALIZES ITS *TITLE 3 TOXICITY *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: ALPHA-BUNGAROTOXIN; *COMPND 3 CHAIN: A; *COMPND 4 SYNONYM: LONG NEUROTOXIN 1, BGTX, ALPHA-BTX, A-BTX; *COMPND 5 OTHER_DETAILS: ALPHA-NEUROTOXIN; *COMPND 6 MOL_ID: 2; *COMPND 7 MOLECULE: PEPTIDE; *COMPND 8 CHAIN: B; *COMPND 9 SYNONYM: HIGH AFFINITY PEPTIDE; *COMPND 10 OTHER_DETAILS: A CHEMICALLY SYNTHESIZED PEPTIDE THAT *COMPND 12 INHIBITS A-BTX BINDING TO ACHR WITH AN IC50 OF 2 NM *SOURCE MOL_ID: 1; *SOURCE 2 ORGANISM_SCIENTIFIC: BUNGARUS MULTICINCTUS; *SOURCE 3 ORGANISM_COMMON: MANY-BANDED KRAIT; *SOURCE 4 SECRETION: VENOM; *SOURCE 5 MOL_ID: 2; *SOURCE 6 SYNTHETIC: MIMOTOPE OF THE NICOTINIC ACETYLCHOLINE *SOURCE 7 RECEPTOR; *KEYWDS ACETYLCHOLINE RECEPTOR MIMITOPE, ALPHA-BUNGAROTOXIN, *KEYWDS 2 PROTEIN-PEPTIDE COMPLEX, TOXIN, BETA-HAIRPIN *EXPDTA NMR, MINIMIZED AVERAGE STRUCTURE *AUTHOR T.SCHERF,R.KASHER,M.BALASS,M.FRIDKIN,S.FUCHS, *AUTHOR 2 E.KATCHALSKI-KATZIR ; save_