data_wwPDB_remediated_restraints_file_for_PDB_entry_1i17 # This wwPDB archive file contains, for PDB entry 1i17: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389–396. save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_1i17 _Entry.Title "wwPDB remediated NMR restraints for PDB entry 1i17" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 1i17" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_1i17 _Assembly.ID 1 _Assembly.Name 1i17 _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "all free" _Assembly.Molecular_mass 12279.7585 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 "PRION LIKE PROTEIN" 1 $PRION_LIKE_PROTEIN A . no . . . . . . rr_1i17 1 stop_ save_ save_PRION_LIKE_PROTEIN _Entity.Sf_category entity _Entity.Sf_framecode PRION_LIKE_PROTEIN _Entity.Entry_ID rr_1i17 _Entity.ID 1 _Entity.Name PRION_LIKE_PROTEIN _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code ; RVAENRPGAFIKQGRKLDID FGAEGNRYYAANYWQFPDGI YYEGCSEANVTKEMLVTSCV NATQAANQAEFSREKQDSKL HQRVLWRLIKEICSAKHCDF WLERGAA ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 107 _Entity.Paramagnetic no _Entity.Thiol_state "all free" _Entity.Parent_entity_ID 1 _Entity.Formula_weight 12279.7585 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . ARG . rr_1i17 1 2 . VAL . rr_1i17 1 3 . ALA . rr_1i17 1 4 . GLU . rr_1i17 1 5 . ASN . rr_1i17 1 6 . ARG . rr_1i17 1 7 . PRO . rr_1i17 1 8 . GLY . rr_1i17 1 9 . ALA . rr_1i17 1 10 . PHE . rr_1i17 1 11 . ILE . rr_1i17 1 12 . LYS . rr_1i17 1 13 . GLN . rr_1i17 1 14 . GLY . rr_1i17 1 15 . ARG . rr_1i17 1 16 . LYS . rr_1i17 1 17 . LEU . rr_1i17 1 18 . ASP . rr_1i17 1 19 . ILE . rr_1i17 1 20 . ASP . rr_1i17 1 21 . PHE . rr_1i17 1 22 . GLY . rr_1i17 1 23 . ALA . rr_1i17 1 24 . GLU . rr_1i17 1 25 . GLY . rr_1i17 1 26 . ASN . rr_1i17 1 27 . ARG . rr_1i17 1 28 . TYR . rr_1i17 1 29 . TYR . rr_1i17 1 30 . ALA . rr_1i17 1 31 . ALA . rr_1i17 1 32 . ASN . rr_1i17 1 33 . TYR . rr_1i17 1 34 . TRP . rr_1i17 1 35 . GLN . rr_1i17 1 36 . PHE . rr_1i17 1 37 . PRO . rr_1i17 1 38 . ASP . rr_1i17 1 39 . GLY . rr_1i17 1 40 . ILE . rr_1i17 1 41 . TYR . rr_1i17 1 42 . TYR . rr_1i17 1 43 . GLU . rr_1i17 1 44 . GLY . rr_1i17 1 45 . CYS . rr_1i17 1 46 . SER . rr_1i17 1 47 . GLU . rr_1i17 1 48 . ALA . rr_1i17 1 49 . ASN . rr_1i17 1 50 . VAL . rr_1i17 1 51 . THR . rr_1i17 1 52 . LYS . rr_1i17 1 53 . GLU . rr_1i17 1 54 . MET . rr_1i17 1 55 . LEU . rr_1i17 1 56 . VAL . rr_1i17 1 57 . THR . rr_1i17 1 58 . SER . rr_1i17 1 59 . CYS . rr_1i17 1 60 . VAL . rr_1i17 1 61 . ASN . rr_1i17 1 62 . ALA . rr_1i17 1 63 . THR . rr_1i17 1 64 . GLN . rr_1i17 1 65 . ALA . rr_1i17 1 66 . ALA . rr_1i17 1 67 . ASN . rr_1i17 1 68 . GLN . rr_1i17 1 69 . ALA . rr_1i17 1 70 . GLU . rr_1i17 1 71 . PHE . rr_1i17 1 72 . SER . rr_1i17 1 73 . ARG . rr_1i17 1 74 . GLU . rr_1i17 1 75 . LYS . rr_1i17 1 76 . GLN . rr_1i17 1 77 . ASP . rr_1i17 1 78 . SER . rr_1i17 1 79 . LYS . rr_1i17 1 80 . LEU . rr_1i17 1 81 . HIS . rr_1i17 1 82 . GLN . rr_1i17 1 83 . ARG . rr_1i17 1 84 . VAL . rr_1i17 1 85 . LEU . rr_1i17 1 86 . TRP . rr_1i17 1 87 . ARG . rr_1i17 1 88 . LEU . rr_1i17 1 89 . ILE . rr_1i17 1 90 . LYS . rr_1i17 1 91 . GLU . rr_1i17 1 92 . ILE . rr_1i17 1 93 . CYS . rr_1i17 1 94 . SER . rr_1i17 1 95 . ALA . rr_1i17 1 96 . LYS . rr_1i17 1 97 . HIS . rr_1i17 1 98 . CYS . rr_1i17 1 99 . ASP . rr_1i17 1 100 . PHE . rr_1i17 1 101 . TRP . rr_1i17 1 102 . LEU . rr_1i17 1 103 . GLU . rr_1i17 1 104 . ARG . rr_1i17 1 105 . GLY . rr_1i17 1 106 . ALA . rr_1i17 1 107 . ALA . rr_1i17 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . ARG 1 1 rr_1i17 1 . VAL 2 2 rr_1i17 1 . ALA 3 3 rr_1i17 1 . GLU 4 4 rr_1i17 1 . ASN 5 5 rr_1i17 1 . ARG 6 6 rr_1i17 1 . PRO 7 7 rr_1i17 1 . GLY 8 8 rr_1i17 1 . ALA 9 9 rr_1i17 1 . PHE 10 10 rr_1i17 1 . ILE 11 11 rr_1i17 1 . LYS 12 12 rr_1i17 1 . GLN 13 13 rr_1i17 1 . GLY 14 14 rr_1i17 1 . ARG 15 15 rr_1i17 1 . LYS 16 16 rr_1i17 1 . LEU 17 17 rr_1i17 1 . ASP 18 18 rr_1i17 1 . ILE 19 19 rr_1i17 1 . ASP 20 20 rr_1i17 1 . PHE 21 21 rr_1i17 1 . GLY 22 22 rr_1i17 1 . ALA 23 23 rr_1i17 1 . GLU 24 24 rr_1i17 1 . GLY 25 25 rr_1i17 1 . ASN 26 26 rr_1i17 1 . ARG 27 27 rr_1i17 1 . TYR 28 28 rr_1i17 1 . TYR 29 29 rr_1i17 1 . ALA 30 30 rr_1i17 1 . ALA 31 31 rr_1i17 1 . ASN 32 32 rr_1i17 1 . TYR 33 33 rr_1i17 1 . TRP 34 34 rr_1i17 1 . GLN 35 35 rr_1i17 1 . PHE 36 36 rr_1i17 1 . PRO 37 37 rr_1i17 1 . ASP 38 38 rr_1i17 1 . GLY 39 39 rr_1i17 1 . ILE 40 40 rr_1i17 1 . TYR 41 41 rr_1i17 1 . TYR 42 42 rr_1i17 1 . GLU 43 43 rr_1i17 1 . GLY 44 44 rr_1i17 1 . CYS 45 45 rr_1i17 1 . SER 46 46 rr_1i17 1 . GLU 47 47 rr_1i17 1 . ALA 48 48 rr_1i17 1 . ASN 49 49 rr_1i17 1 . VAL 50 50 rr_1i17 1 . THR 51 51 rr_1i17 1 . LYS 52 52 rr_1i17 1 . GLU 53 53 rr_1i17 1 . MET 54 54 rr_1i17 1 . LEU 55 55 rr_1i17 1 . VAL 56 56 rr_1i17 1 . THR 57 57 rr_1i17 1 . SER 58 58 rr_1i17 1 . CYS 59 59 rr_1i17 1 . VAL 60 60 rr_1i17 1 . ASN 61 61 rr_1i17 1 . ALA 62 62 rr_1i17 1 . THR 63 63 rr_1i17 1 . GLN 64 64 rr_1i17 1 . ALA 65 65 rr_1i17 1 . ALA 66 66 rr_1i17 1 . ASN 67 67 rr_1i17 1 . GLN 68 68 rr_1i17 1 . ALA 69 69 rr_1i17 1 . GLU 70 70 rr_1i17 1 . PHE 71 71 rr_1i17 1 . SER 72 72 rr_1i17 1 . ARG 73 73 rr_1i17 1 . GLU 74 74 rr_1i17 1 . LYS 75 75 rr_1i17 1 . GLN 76 76 rr_1i17 1 . ASP 77 77 rr_1i17 1 . SER 78 78 rr_1i17 1 . LYS 79 79 rr_1i17 1 . LEU 80 80 rr_1i17 1 . HIS 81 81 rr_1i17 1 . GLN 82 82 rr_1i17 1 . ARG 83 83 rr_1i17 1 . VAL 84 84 rr_1i17 1 . LEU 85 85 rr_1i17 1 . TRP 86 86 rr_1i17 1 . ARG 87 87 rr_1i17 1 . LEU 88 88 rr_1i17 1 . ILE 89 89 rr_1i17 1 . LYS 90 90 rr_1i17 1 . GLU 91 91 rr_1i17 1 . ILE 92 92 rr_1i17 1 . CYS 93 93 rr_1i17 1 . SER 94 94 rr_1i17 1 . ALA 95 95 rr_1i17 1 . LYS 96 96 rr_1i17 1 . HIS 97 97 rr_1i17 1 . CYS 98 98 rr_1i17 1 . ASP 99 99 rr_1i17 1 . PHE 100 100 rr_1i17 1 . TRP 101 101 rr_1i17 1 . LEU 102 102 rr_1i17 1 . GLU 103 103 rr_1i17 1 . ARG 104 104 rr_1i17 1 . GLY 105 105 rr_1i17 1 . ALA 106 106 rr_1i17 1 . ALA 107 107 rr_1i17 1 stop_ save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_1i17 _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 20 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_1i17 _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 1i17.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_1i17 1 1 1i17.mr . . AMBER 2 distance NOE simple 0 rr_1i17 1 1 1i17.mr . . AMBER 3 "dihedral angle" "Not applicable" "Not applicable" 0 rr_1i17 1 1 1i17.mr . . "MR format" 4 "nomenclature mapping" "Not applicable" "Not applicable" 0 rr_1i17 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_1i17 _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER UNKNOWN FUNCTION 31-JAN-01 1I17 *TITLE NMR STRUCTURE OF MOUSE DOPPEL 51-157 *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: PRION-LIKE PROTEIN; *COMPND 3 CHAIN: A; *COMPND 4 FRAGMENT: GLOBULAR DOMAIN (RESIDUES 51-157); *COMPND 5 SYNONYM: MOUSE DOPPEL; *COMPND 6 ENGINEERED: YES *SOURCE MOL_ID: 1; *SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; *SOURCE 3 ORGANISM_COMMON: MOUSE; *SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; *SOURCE 5 EXPRESSION_SYSTEM_COMMON: BACTERIA; *SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); *SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; *SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21A(+) *KEYWDS MOUSE DOPPEL, DOPPEL, DPL, PRION *EXPDTA NMR, 20 STRUCTURES *AUTHOR H.MO, R.C.MOORE, F.E.COHEN, D.WESTAWAY, S.B.PRUSINER, *AUTHOR 2 P.E.WRIGHT, H.J.DYSON *REVDAT 1 07-MAR-01 1I17 0 # ; save_