data_wwPDB_remediated_restraints_file_for_PDB_entry_1kg1 # This wwPDB archive file contains, for PDB entry 1kg1: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389–396. save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_1kg1 _Entry.Title "wwPDB remediated NMR restraints for PDB entry 1kg1" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 1kg1" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_1kg1 _Assembly.ID 1 _Assembly.Name 1kg1 _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "all free" _Assembly.Molecular_mass 6431.2134 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 "Necrosis Inducing Protein 1" 1 $Necrosis_Inducing_Protein_1 A . no . . . . . . rr_1kg1 1 stop_ save_ save_Necrosis_Inducing_Protein_1 _Entity.Sf_category entity _Entity.Sf_framecode Necrosis_Inducing_Protein_1 _Entity.Entry_ID rr_1kg1 _Entity.ID 1 _Entity.Name Necrosis_Inducing_Protein_1 _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code ; DRCRYTLCCDGALKAVSACL HESESCLVPGDCCRGKSRLT LCSYGEGGNGFQCPTGYRQC ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 60 _Entity.Paramagnetic no _Entity.Thiol_state "all free" _Entity.Parent_entity_ID 1 _Entity.Formula_weight 6431.2134 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . ASP . rr_1kg1 1 2 . ARG . rr_1kg1 1 3 . CYS . rr_1kg1 1 4 . ARG . rr_1kg1 1 5 . TYR . rr_1kg1 1 6 . THR . rr_1kg1 1 7 . LEU . rr_1kg1 1 8 . CYS . rr_1kg1 1 9 . CYS . rr_1kg1 1 10 . ASP . rr_1kg1 1 11 . GLY . rr_1kg1 1 12 . ALA . rr_1kg1 1 13 . LEU . rr_1kg1 1 14 . LYS . rr_1kg1 1 15 . ALA . rr_1kg1 1 16 . VAL . rr_1kg1 1 17 . SER . rr_1kg1 1 18 . ALA . rr_1kg1 1 19 . CYS . rr_1kg1 1 20 . LEU . rr_1kg1 1 21 . HIS . rr_1kg1 1 22 . GLU . rr_1kg1 1 23 . SER . rr_1kg1 1 24 . GLU . rr_1kg1 1 25 . SER . rr_1kg1 1 26 . CYS . rr_1kg1 1 27 . LEU . rr_1kg1 1 28 . VAL . rr_1kg1 1 29 . PRO . rr_1kg1 1 30 . GLY . rr_1kg1 1 31 . ASP . rr_1kg1 1 32 . CYS . rr_1kg1 1 33 . CYS . rr_1kg1 1 34 . ARG . rr_1kg1 1 35 . GLY . rr_1kg1 1 36 . LYS . rr_1kg1 1 37 . SER . rr_1kg1 1 38 . ARG . rr_1kg1 1 39 . LEU . rr_1kg1 1 40 . THR . rr_1kg1 1 41 . LEU . rr_1kg1 1 42 . CYS . rr_1kg1 1 43 . SER . rr_1kg1 1 44 . TYR . rr_1kg1 1 45 . GLY . rr_1kg1 1 46 . GLU . rr_1kg1 1 47 . GLY . rr_1kg1 1 48 . GLY . rr_1kg1 1 49 . ASN . rr_1kg1 1 50 . GLY . rr_1kg1 1 51 . PHE . rr_1kg1 1 52 . GLN . rr_1kg1 1 53 . CYS . rr_1kg1 1 54 . PRO . rr_1kg1 1 55 . THR . rr_1kg1 1 56 . GLY . rr_1kg1 1 57 . TYR . rr_1kg1 1 58 . ARG . rr_1kg1 1 59 . GLN . rr_1kg1 1 60 . CYS . rr_1kg1 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . ASP 1 1 rr_1kg1 1 . ARG 2 2 rr_1kg1 1 . CYS 3 3 rr_1kg1 1 . ARG 4 4 rr_1kg1 1 . TYR 5 5 rr_1kg1 1 . THR 6 6 rr_1kg1 1 . LEU 7 7 rr_1kg1 1 . CYS 8 8 rr_1kg1 1 . CYS 9 9 rr_1kg1 1 . ASP 10 10 rr_1kg1 1 . GLY 11 11 rr_1kg1 1 . ALA 12 12 rr_1kg1 1 . LEU 13 13 rr_1kg1 1 . LYS 14 14 rr_1kg1 1 . ALA 15 15 rr_1kg1 1 . VAL 16 16 rr_1kg1 1 . SER 17 17 rr_1kg1 1 . ALA 18 18 rr_1kg1 1 . CYS 19 19 rr_1kg1 1 . LEU 20 20 rr_1kg1 1 . HIS 21 21 rr_1kg1 1 . GLU 22 22 rr_1kg1 1 . SER 23 23 rr_1kg1 1 . GLU 24 24 rr_1kg1 1 . SER 25 25 rr_1kg1 1 . CYS 26 26 rr_1kg1 1 . LEU 27 27 rr_1kg1 1 . VAL 28 28 rr_1kg1 1 . PRO 29 29 rr_1kg1 1 . GLY 30 30 rr_1kg1 1 . ASP 31 31 rr_1kg1 1 . CYS 32 32 rr_1kg1 1 . CYS 33 33 rr_1kg1 1 . ARG 34 34 rr_1kg1 1 . GLY 35 35 rr_1kg1 1 . LYS 36 36 rr_1kg1 1 . SER 37 37 rr_1kg1 1 . ARG 38 38 rr_1kg1 1 . LEU 39 39 rr_1kg1 1 . THR 40 40 rr_1kg1 1 . LEU 41 41 rr_1kg1 1 . CYS 42 42 rr_1kg1 1 . SER 43 43 rr_1kg1 1 . TYR 44 44 rr_1kg1 1 . GLY 45 45 rr_1kg1 1 . GLU 46 46 rr_1kg1 1 . GLY 47 47 rr_1kg1 1 . GLY 48 48 rr_1kg1 1 . ASN 49 49 rr_1kg1 1 . GLY 50 50 rr_1kg1 1 . PHE 51 51 rr_1kg1 1 . GLN 52 52 rr_1kg1 1 . CYS 53 53 rr_1kg1 1 . PRO 54 54 rr_1kg1 1 . THR 55 55 rr_1kg1 1 . GLY 56 56 rr_1kg1 1 . TYR 57 57 rr_1kg1 1 . ARG 58 58 rr_1kg1 1 . GLN 59 59 rr_1kg1 1 . CYS 60 60 rr_1kg1 1 stop_ save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_1kg1 _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 25 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_1kg1 _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 1kg1.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_1kg1 1 1 1kg1.mr . . AQUA 2 distance "hydrogen bond" simple 0 rr_1kg1 1 1 1kg1.mr . . AQUA 3 distance "disulfide bond" simple 0 rr_1kg1 1 1 1kg1.mr . . AQUA 4 distance NOE simple 0 rr_1kg1 1 1 1kg1.mr . . AQUA 5 "dihedral angle" "Not applicable" "Not applicable" 0 rr_1kg1 1 1 1kg1.mr . . "MR format" 6 "nomenclature mapping" "Not applicable" "Not applicable" 0 rr_1kg1 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_1kg1 _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER TOXIN 26-NOV-01 1KG1 *TITLE NMR STRUCTURE OF THE NIP1 ELICITOR PROTEIN FROM *TITLE 2 RHYNCHOSPORIUM SECALIS *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: NECROSIS INDUCING PROTEIN 1; *COMPND 3 CHAIN: A; *COMPND 4 SYNONYM: NIP1; *COMPND 5 ENGINEERED: YES *SOURCE MOL_ID: 1; *SOURCE 2 ORGANISM_SCIENTIFIC: RHYNCHOSPORIUM SECALIS; *SOURCE 3 ORGANISM_COMMON: LEAF BLOTCH OF BARLEY; *SOURCE 4 GENE: NIP1; *SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; *SOURCE 6 EXPRESSION_SYSTEM_COMMON: BACTERIA; *SOURCE 7 EXPRESSION_SYSTEM_STRAIN: AD494; *SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; *SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE30 *KEYWDS ANTIPARALEL BETA SHEETS *EXPDTA NMR, 25 STRUCTURES *AUTHOR K.A.VAN 'T SLOT, H.A.VAN DEN BURG, C.P.KLOKS, C.W.HILBERS, *AUTHOR 2 W.KNOGGE, C.H.PAPAVOINE *REVDAT 1 11-NOV-03 1KG1 0 ; save_