data_wwPDB_remediated_restraints_file_for_PDB_entry_1lm2 # This wwPDB archive file contains, for PDB entry 1lm2: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389–396. save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_1lm2 _Entry.Title "wwPDB remediated NMR restraints for PDB entry 1lm2" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 1lm2" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_1lm2 _Assembly.ID 1 _Assembly.Name 1lm2 _Assembly.Number_of_components 5 _Assembly.Organic_ligands 3 _Assembly.Metal_ions 1 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "all free" _Assembly.Molecular_mass 9166.7279 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 "cytochrome c7" 1 $cytochrome_c7 A . no . . . . . . rr_1lm2 1 2 "CHROMIUM ION" 3 $CHROMIUM_ION B . no . . . . . . rr_1lm2 1 3 "HEME C" 2 $HEME_C C . no . . . . . . rr_1lm2 1 4 "HEME C" 2 $HEME_C D . no . . . . . . rr_1lm2 1 5 "HEME C" 2 $HEME_C E . no . . . . . . rr_1lm2 1 stop_ save_ save_cytochrome_c7 _Entity.Sf_category entity _Entity.Sf_framecode cytochrome_c7 _Entity.Entry_ID rr_1lm2 _Entity.ID 1 _Entity.Name cytochrome_c7 _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code ; ADVVTYENKKGNVTFDHKAH AEKLGCDACHEGTPAKIAID KKSAHKDACKTCHKSNNGPT KCGGCHIK ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 68 _Entity.Paramagnetic no _Entity.Thiol_state "all free" _Entity.Parent_entity_ID 1 _Entity.Formula_weight 7259.1899 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . ALA . rr_1lm2 1 2 . ASP . rr_1lm2 1 3 . VAL . rr_1lm2 1 4 . VAL . rr_1lm2 1 5 . THR . rr_1lm2 1 6 . TYR . rr_1lm2 1 7 . GLU . rr_1lm2 1 8 . ASN . rr_1lm2 1 9 . LYS . rr_1lm2 1 10 . LYS . rr_1lm2 1 11 . GLY . rr_1lm2 1 12 . ASN . rr_1lm2 1 13 . VAL . rr_1lm2 1 14 . THR . rr_1lm2 1 15 . PHE . rr_1lm2 1 16 . ASP . rr_1lm2 1 17 . HIS . rr_1lm2 1 18 . LYS . rr_1lm2 1 19 . ALA . rr_1lm2 1 20 . HIS . rr_1lm2 1 21 . ALA . rr_1lm2 1 22 . GLU . rr_1lm2 1 23 . LYS . rr_1lm2 1 24 . LEU . rr_1lm2 1 25 . GLY . rr_1lm2 1 26 . CYS . rr_1lm2 1 27 . ASP . rr_1lm2 1 28 . ALA . rr_1lm2 1 29 . CYS . rr_1lm2 1 30 . HIS . rr_1lm2 1 31 . GLU . rr_1lm2 1 32 . GLY . rr_1lm2 1 33 . THR . rr_1lm2 1 34 . PRO . rr_1lm2 1 35 . ALA . rr_1lm2 1 36 . LYS . rr_1lm2 1 37 . ILE . rr_1lm2 1 38 . ALA . rr_1lm2 1 39 . ILE . rr_1lm2 1 40 . ASP . rr_1lm2 1 41 . LYS . rr_1lm2 1 42 . LYS . rr_1lm2 1 43 . SER . rr_1lm2 1 44 . ALA . rr_1lm2 1 45 . HIS . rr_1lm2 1 46 . LYS . rr_1lm2 1 47 . ASP . rr_1lm2 1 48 . ALA . rr_1lm2 1 49 . CYS . rr_1lm2 1 50 . LYS . rr_1lm2 1 51 . THR . rr_1lm2 1 52 . CYS . rr_1lm2 1 53 . HIS . rr_1lm2 1 54 . LYS . rr_1lm2 1 55 . SER . rr_1lm2 1 56 . ASN . rr_1lm2 1 57 . ASN . rr_1lm2 1 58 . GLY . rr_1lm2 1 59 . PRO . rr_1lm2 1 60 . THR . rr_1lm2 1 61 . LYS . rr_1lm2 1 62 . CYS . rr_1lm2 1 63 . GLY . rr_1lm2 1 64 . GLY . rr_1lm2 1 65 . CYS . rr_1lm2 1 66 . HIS . rr_1lm2 1 67 . ILE . rr_1lm2 1 68 . LYS . rr_1lm2 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . ALA 1 1 rr_1lm2 1 . ASP 2 2 rr_1lm2 1 . VAL 3 3 rr_1lm2 1 . VAL 4 4 rr_1lm2 1 . THR 5 5 rr_1lm2 1 . TYR 6 6 rr_1lm2 1 . GLU 7 7 rr_1lm2 1 . ASN 8 8 rr_1lm2 1 . LYS 9 9 rr_1lm2 1 . LYS 10 10 rr_1lm2 1 . GLY 11 11 rr_1lm2 1 . ASN 12 12 rr_1lm2 1 . VAL 13 13 rr_1lm2 1 . THR 14 14 rr_1lm2 1 . PHE 15 15 rr_1lm2 1 . ASP 16 16 rr_1lm2 1 . HIS 17 17 rr_1lm2 1 . LYS 18 18 rr_1lm2 1 . ALA 19 19 rr_1lm2 1 . HIS 20 20 rr_1lm2 1 . ALA 21 21 rr_1lm2 1 . GLU 22 22 rr_1lm2 1 . LYS 23 23 rr_1lm2 1 . LEU 24 24 rr_1lm2 1 . GLY 25 25 rr_1lm2 1 . CYS 26 26 rr_1lm2 1 . ASP 27 27 rr_1lm2 1 . ALA 28 28 rr_1lm2 1 . CYS 29 29 rr_1lm2 1 . HIS 30 30 rr_1lm2 1 . GLU 31 31 rr_1lm2 1 . GLY 32 32 rr_1lm2 1 . THR 33 33 rr_1lm2 1 . PRO 34 34 rr_1lm2 1 . ALA 35 35 rr_1lm2 1 . LYS 36 36 rr_1lm2 1 . ILE 37 37 rr_1lm2 1 . ALA 38 38 rr_1lm2 1 . ILE 39 39 rr_1lm2 1 . ASP 40 40 rr_1lm2 1 . LYS 41 41 rr_1lm2 1 . LYS 42 42 rr_1lm2 1 . SER 43 43 rr_1lm2 1 . ALA 44 44 rr_1lm2 1 . HIS 45 45 rr_1lm2 1 . LYS 46 46 rr_1lm2 1 . ASP 47 47 rr_1lm2 1 . ALA 48 48 rr_1lm2 1 . CYS 49 49 rr_1lm2 1 . LYS 50 50 rr_1lm2 1 . THR 51 51 rr_1lm2 1 . CYS 52 52 rr_1lm2 1 . HIS 53 53 rr_1lm2 1 . LYS 54 54 rr_1lm2 1 . SER 55 55 rr_1lm2 1 . ASN 56 56 rr_1lm2 1 . ASN 57 57 rr_1lm2 1 . GLY 58 58 rr_1lm2 1 . PRO 59 59 rr_1lm2 1 . THR 60 60 rr_1lm2 1 . LYS 61 61 rr_1lm2 1 . CYS 62 62 rr_1lm2 1 . GLY 63 63 rr_1lm2 1 . GLY 64 64 rr_1lm2 1 . CYS 65 65 rr_1lm2 1 . HIS 66 66 rr_1lm2 1 . ILE 67 67 rr_1lm2 1 . LYS 68 68 rr_1lm2 1 stop_ save_ save_HEME_C _Entity.Sf_category entity _Entity.Sf_framecode HEME_C _Entity.Entry_ID rr_1lm2 _Entity.ID 2 _Entity.Name HEME_C _Entity.Type non-polymer _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_chirality yes _Entity.Nstd_linkage no _Entity.Nonpolymer_comp_ID HEC _Entity.Nonpolymer_comp_label $chem_comp_HEC _Entity.Number_of_monomers 1 _Entity.Paramagnetic no _Entity.Thiol_state "not present" _Entity.Parent_entity_ID 2 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . HEC . rr_1lm2 2 stop_ save_ save_CHROMIUM_ION _Entity.Sf_category entity _Entity.Sf_framecode CHROMIUM_ION _Entity.Entry_ID rr_1lm2 _Entity.ID 3 _Entity.Name CHROMIUM_ION _Entity.Type non-polymer _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_chirality yes _Entity.Nstd_linkage no _Entity.Nonpolymer_comp_ID CR _Entity.Nonpolymer_comp_label $chem_comp_CR _Entity.Number_of_monomers 1 _Entity.Paramagnetic no _Entity.Thiol_state "not present" _Entity.Parent_entity_ID 3 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . CR . rr_1lm2 3 stop_ save_ save_chem_comp_HEC _Chem_comp.Sf_category chem_comp _Chem_comp.Sf_framecode chem_comp_HEC _Chem_comp.Entry_ID rr_1lm2 _Chem_comp.ID HEC _Chem_comp.Name "HEME C" _Chem_comp.Type non-polymer _Chem_comp.PDB_code HEC _Chem_comp.Formal_charge 0 _Chem_comp.Paramagnetic no _Chem_comp.Aromatic yes _Chem_comp.Formula "C34 H34 Fe N4 O4" _Chem_comp.Formula_weight 618.514 save_ save_chem_comp_CR _Chem_comp.Sf_category chem_comp _Chem_comp.Sf_framecode chem_comp_CR _Chem_comp.Entry_ID rr_1lm2 _Chem_comp.ID CR _Chem_comp.Name "CHROMIUM ION" _Chem_comp.Type non-polymer _Chem_comp.PDB_code CR _Chem_comp.Formal_charge 3 _Chem_comp.Paramagnetic no _Chem_comp.Aromatic no _Chem_comp.Formula Cr _Chem_comp.Formula_weight 51.996 save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_1lm2 _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 35 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_1lm2 _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 1lm2.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_1lm2 1 1 1lm2.mr . . unknown 2 line-broadening "Not applicable" "Not applicable" 0 rr_1lm2 1 1 1lm2.mr . . "MR format" 3 "nomenclature mapping" "Not applicable" "Not applicable" 0 rr_1lm2 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_1lm2 _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER ELECTRON TRANSPORT 30-APR-02 1LM2 *TITLE NMR STRUCTURAL CHARACTERIZATION OF THE REDUCTION OF *TITLE 2 CHROMIUM(VI) TO CHROMIUM(III) BY CYTOCHROME C7 *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: CYTOCHROME C7; *COMPND 3 CHAIN: A; *COMPND 4 SYNONYM: CYTOCHROME C3, CYTOCHROME C551.5 *SOURCE MOL_ID: 1; *SOURCE 2 ORGANISM_SCIENTIFIC: DESULFUROMONAS ACETOXIDANS; *SOURCE 3 ORGANISM_COMMON: BACTERIA *KEYWDS CHROMIUM, CYTOCHROME C7, NMR *EXPDTA NMR, 35 STRUCTURES *AUTHOR M.ASSFALG, I.BERTINI, M.BRUSCHI, C.MICHEL, P.TURANO *REVDAT 1 07-AUG-02 1LM2 0 ; save_