data_wwPDB_remediated_restraints_file_for_PDB_entry_1mx7 # This wwPDB archive file contains, for PDB entry 1mx7: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389–396. save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_1mx7 _Entry.Title "wwPDB remediated NMR restraints for PDB entry 1mx7" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 1mx7" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_1mx7 _Assembly.ID 1 _Assembly.Name 1mx7 _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "all free" _Assembly.Molecular_mass 15699.7973 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 "CELLULAR RETINOL BINDING PROTEIN I APO" 1 $CELLULAR_RETINOL_BINDING_PROTEIN_I__APO A . no . . . . . . rr_1mx7 1 stop_ save_ save_CELLULAR_RETINOL_BINDING_PROTEIN_I__APO _Entity.Sf_category entity _Entity.Sf_framecode CELLULAR_RETINOL_BINDING_PROTEIN_I__APO _Entity.Entry_ID rr_1mx7 _Entity.ID 1 _Entity.Name CELLULAR_RETINOL_BINDING_PROTEIN_I__APO _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code ; PVDFNGYWKMLSNENFEEYL RALDVNVALRKIANLLKPDK EIVQDGDHMIIRTLSTFRNY IMDFQVGKEFEEDLTGIDDR KCMTTVSWDGDKLQCVQKGE KEGRGWTQWIEGDELHLEMR AEGVTCKQVFKKVH ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 134 _Entity.Paramagnetic no _Entity.Thiol_state "all free" _Entity.Parent_entity_ID 1 _Entity.Formula_weight 15699.7973 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . PRO . rr_1mx7 1 2 . VAL . rr_1mx7 1 3 . ASP . rr_1mx7 1 4 . PHE . rr_1mx7 1 5 . ASN . rr_1mx7 1 6 . GLY . rr_1mx7 1 7 . TYR . rr_1mx7 1 8 . TRP . rr_1mx7 1 9 . LYS . rr_1mx7 1 10 . MET . rr_1mx7 1 11 . LEU . rr_1mx7 1 12 . SER . rr_1mx7 1 13 . ASN . rr_1mx7 1 14 . GLU . rr_1mx7 1 15 . ASN . rr_1mx7 1 16 . PHE . rr_1mx7 1 17 . GLU . rr_1mx7 1 18 . GLU . rr_1mx7 1 19 . TYR . rr_1mx7 1 20 . LEU . rr_1mx7 1 21 . ARG . rr_1mx7 1 22 . ALA . rr_1mx7 1 23 . LEU . rr_1mx7 1 24 . ASP . rr_1mx7 1 25 . VAL . rr_1mx7 1 26 . ASN . rr_1mx7 1 27 . VAL . rr_1mx7 1 28 . ALA . rr_1mx7 1 29 . LEU . rr_1mx7 1 30 . ARG . rr_1mx7 1 31 . LYS . rr_1mx7 1 32 . ILE . rr_1mx7 1 33 . ALA . rr_1mx7 1 34 . ASN . rr_1mx7 1 35 . LEU . rr_1mx7 1 36 . LEU . rr_1mx7 1 37 . LYS . rr_1mx7 1 38 . PRO . rr_1mx7 1 39 . ASP . rr_1mx7 1 40 . LYS . rr_1mx7 1 41 . GLU . rr_1mx7 1 42 . ILE . rr_1mx7 1 43 . VAL . rr_1mx7 1 44 . GLN . rr_1mx7 1 45 . ASP . rr_1mx7 1 46 . GLY . rr_1mx7 1 47 . ASP . rr_1mx7 1 48 . HIS . rr_1mx7 1 49 . MET . rr_1mx7 1 50 . ILE . rr_1mx7 1 51 . ILE . rr_1mx7 1 52 . ARG . rr_1mx7 1 53 . THR . rr_1mx7 1 54 . LEU . rr_1mx7 1 55 . SER . rr_1mx7 1 56 . THR . rr_1mx7 1 57 . PHE . rr_1mx7 1 58 . ARG . rr_1mx7 1 59 . ASN . rr_1mx7 1 60 . TYR . rr_1mx7 1 61 . ILE . rr_1mx7 1 62 . MET . rr_1mx7 1 63 . ASP . rr_1mx7 1 64 . PHE . rr_1mx7 1 65 . GLN . rr_1mx7 1 66 . VAL . rr_1mx7 1 67 . GLY . rr_1mx7 1 68 . LYS . rr_1mx7 1 69 . GLU . rr_1mx7 1 70 . PHE . rr_1mx7 1 71 . GLU . rr_1mx7 1 72 . GLU . rr_1mx7 1 73 . ASP . rr_1mx7 1 74 . LEU . rr_1mx7 1 75 . THR . rr_1mx7 1 76 . GLY . rr_1mx7 1 77 . ILE . rr_1mx7 1 78 . ASP . rr_1mx7 1 79 . ASP . rr_1mx7 1 80 . ARG . rr_1mx7 1 81 . LYS . rr_1mx7 1 82 . CYS . rr_1mx7 1 83 . MET . rr_1mx7 1 84 . THR . rr_1mx7 1 85 . THR . rr_1mx7 1 86 . VAL . rr_1mx7 1 87 . SER . rr_1mx7 1 88 . TRP . rr_1mx7 1 89 . ASP . rr_1mx7 1 90 . GLY . rr_1mx7 1 91 . ASP . rr_1mx7 1 92 . LYS . rr_1mx7 1 93 . LEU . rr_1mx7 1 94 . GLN . rr_1mx7 1 95 . CYS . rr_1mx7 1 96 . VAL . rr_1mx7 1 97 . GLN . rr_1mx7 1 98 . LYS . rr_1mx7 1 99 . GLY . rr_1mx7 1 100 . GLU . rr_1mx7 1 101 . LYS . rr_1mx7 1 102 . GLU . rr_1mx7 1 103 . GLY . rr_1mx7 1 104 . ARG . rr_1mx7 1 105 . GLY . rr_1mx7 1 106 . TRP . rr_1mx7 1 107 . THR . rr_1mx7 1 108 . GLN . rr_1mx7 1 109 . TRP . rr_1mx7 1 110 . ILE . rr_1mx7 1 111 . GLU . rr_1mx7 1 112 . GLY . rr_1mx7 1 113 . ASP . rr_1mx7 1 114 . GLU . rr_1mx7 1 115 . LEU . rr_1mx7 1 116 . HIS . rr_1mx7 1 117 . LEU . rr_1mx7 1 118 . GLU . rr_1mx7 1 119 . MET . rr_1mx7 1 120 . ARG . rr_1mx7 1 121 . ALA . rr_1mx7 1 122 . GLU . rr_1mx7 1 123 . GLY . rr_1mx7 1 124 . VAL . rr_1mx7 1 125 . THR . rr_1mx7 1 126 . CYS . rr_1mx7 1 127 . LYS . rr_1mx7 1 128 . GLN . rr_1mx7 1 129 . VAL . rr_1mx7 1 130 . PHE . rr_1mx7 1 131 . LYS . rr_1mx7 1 132 . LYS . rr_1mx7 1 133 . VAL . rr_1mx7 1 134 . HIS . rr_1mx7 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . PRO 1 1 rr_1mx7 1 . VAL 2 2 rr_1mx7 1 . ASP 3 3 rr_1mx7 1 . PHE 4 4 rr_1mx7 1 . ASN 5 5 rr_1mx7 1 . GLY 6 6 rr_1mx7 1 . TYR 7 7 rr_1mx7 1 . TRP 8 8 rr_1mx7 1 . LYS 9 9 rr_1mx7 1 . MET 10 10 rr_1mx7 1 . LEU 11 11 rr_1mx7 1 . SER 12 12 rr_1mx7 1 . ASN 13 13 rr_1mx7 1 . GLU 14 14 rr_1mx7 1 . ASN 15 15 rr_1mx7 1 . PHE 16 16 rr_1mx7 1 . GLU 17 17 rr_1mx7 1 . GLU 18 18 rr_1mx7 1 . TYR 19 19 rr_1mx7 1 . LEU 20 20 rr_1mx7 1 . ARG 21 21 rr_1mx7 1 . ALA 22 22 rr_1mx7 1 . LEU 23 23 rr_1mx7 1 . ASP 24 24 rr_1mx7 1 . VAL 25 25 rr_1mx7 1 . ASN 26 26 rr_1mx7 1 . VAL 27 27 rr_1mx7 1 . ALA 28 28 rr_1mx7 1 . LEU 29 29 rr_1mx7 1 . ARG 30 30 rr_1mx7 1 . LYS 31 31 rr_1mx7 1 . ILE 32 32 rr_1mx7 1 . ALA 33 33 rr_1mx7 1 . ASN 34 34 rr_1mx7 1 . LEU 35 35 rr_1mx7 1 . LEU 36 36 rr_1mx7 1 . LYS 37 37 rr_1mx7 1 . PRO 38 38 rr_1mx7 1 . ASP 39 39 rr_1mx7 1 . LYS 40 40 rr_1mx7 1 . GLU 41 41 rr_1mx7 1 . ILE 42 42 rr_1mx7 1 . VAL 43 43 rr_1mx7 1 . GLN 44 44 rr_1mx7 1 . ASP 45 45 rr_1mx7 1 . GLY 46 46 rr_1mx7 1 . ASP 47 47 rr_1mx7 1 . HIS 48 48 rr_1mx7 1 . MET 49 49 rr_1mx7 1 . ILE 50 50 rr_1mx7 1 . ILE 51 51 rr_1mx7 1 . ARG 52 52 rr_1mx7 1 . THR 53 53 rr_1mx7 1 . LEU 54 54 rr_1mx7 1 . SER 55 55 rr_1mx7 1 . THR 56 56 rr_1mx7 1 . PHE 57 57 rr_1mx7 1 . ARG 58 58 rr_1mx7 1 . ASN 59 59 rr_1mx7 1 . TYR 60 60 rr_1mx7 1 . ILE 61 61 rr_1mx7 1 . MET 62 62 rr_1mx7 1 . ASP 63 63 rr_1mx7 1 . PHE 64 64 rr_1mx7 1 . GLN 65 65 rr_1mx7 1 . VAL 66 66 rr_1mx7 1 . GLY 67 67 rr_1mx7 1 . LYS 68 68 rr_1mx7 1 . GLU 69 69 rr_1mx7 1 . PHE 70 70 rr_1mx7 1 . GLU 71 71 rr_1mx7 1 . GLU 72 72 rr_1mx7 1 . ASP 73 73 rr_1mx7 1 . LEU 74 74 rr_1mx7 1 . THR 75 75 rr_1mx7 1 . GLY 76 76 rr_1mx7 1 . ILE 77 77 rr_1mx7 1 . ASP 78 78 rr_1mx7 1 . ASP 79 79 rr_1mx7 1 . ARG 80 80 rr_1mx7 1 . LYS 81 81 rr_1mx7 1 . CYS 82 82 rr_1mx7 1 . MET 83 83 rr_1mx7 1 . THR 84 84 rr_1mx7 1 . THR 85 85 rr_1mx7 1 . VAL 86 86 rr_1mx7 1 . SER 87 87 rr_1mx7 1 . TRP 88 88 rr_1mx7 1 . ASP 89 89 rr_1mx7 1 . GLY 90 90 rr_1mx7 1 . ASP 91 91 rr_1mx7 1 . LYS 92 92 rr_1mx7 1 . LEU 93 93 rr_1mx7 1 . GLN 94 94 rr_1mx7 1 . CYS 95 95 rr_1mx7 1 . VAL 96 96 rr_1mx7 1 . GLN 97 97 rr_1mx7 1 . LYS 98 98 rr_1mx7 1 . GLY 99 99 rr_1mx7 1 . GLU 100 100 rr_1mx7 1 . LYS 101 101 rr_1mx7 1 . GLU 102 102 rr_1mx7 1 . GLY 103 103 rr_1mx7 1 . ARG 104 104 rr_1mx7 1 . GLY 105 105 rr_1mx7 1 . TRP 106 106 rr_1mx7 1 . THR 107 107 rr_1mx7 1 . GLN 108 108 rr_1mx7 1 . TRP 109 109 rr_1mx7 1 . ILE 110 110 rr_1mx7 1 . GLU 111 111 rr_1mx7 1 . GLY 112 112 rr_1mx7 1 . ASP 113 113 rr_1mx7 1 . GLU 114 114 rr_1mx7 1 . LEU 115 115 rr_1mx7 1 . HIS 116 116 rr_1mx7 1 . LEU 117 117 rr_1mx7 1 . GLU 118 118 rr_1mx7 1 . MET 119 119 rr_1mx7 1 . ARG 120 120 rr_1mx7 1 . ALA 121 121 rr_1mx7 1 . GLU 122 122 rr_1mx7 1 . GLY 123 123 rr_1mx7 1 . VAL 124 124 rr_1mx7 1 . THR 125 125 rr_1mx7 1 . CYS 126 126 rr_1mx7 1 . LYS 127 127 rr_1mx7 1 . GLN 128 128 rr_1mx7 1 . VAL 129 129 rr_1mx7 1 . PHE 130 130 rr_1mx7 1 . LYS 131 131 rr_1mx7 1 . LYS 132 132 rr_1mx7 1 . VAL 133 133 rr_1mx7 1 . HIS 134 134 rr_1mx7 1 stop_ save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_1mx7 _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 22 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_1mx7 _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 1mx7.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_1mx7 1 1 1mx7.mr . . n/a 2 comment "Not applicable" "Not applicable" 0 rr_1mx7 1 1 1mx7.mr . . NMRCOMPASS 3 distance NOE simple 0 rr_1mx7 1 1 1mx7.mr . . unknown 4 unknown "Not applicable" "Not applicable" 0 rr_1mx7 1 1 1mx7.mr . . TINKER 5 "dihedral angle" "Not applicable" "Not applicable" 0 rr_1mx7 1 1 1mx7.mr . . TINKER 6 distance NOE simple 0 rr_1mx7 1 1 1mx7.mr . . "MR format" 7 "nomenclature mapping" "Not applicable" "Not applicable" 0 rr_1mx7 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_1mx7 _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER LIPID BINDING PROTEIN 01-OCT-02 1MX7 *TITLE TWO HOMOLOGOUS RAT CELLULAR RETINOL-BINDING PROTEINS DIFFER *TITLE 2 IN LOCAL STRUCTURE AND FLEXIBILITY *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: CELLULAR RETINOL-BINDING PROTEIN I, APO; *COMPND 3 CHAIN: A; *COMPND 4 ENGINEERED: YES *SOURCE MOL_ID: 1; *SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; *SOURCE 3 ORGANISM_COMMON: RAT; *SOURCE 4 GENE: RBP1 OR RBP-1; *SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; *SOURCE 6 EXPRESSION_SYSTEM_COMMON: BACTERIA; *SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM101; *SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; *SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMON CRBP I *KEYWDS BETA-BARREL, HELIX-TURN-HELIX, VITAMIN A, RETINOL-BINDING, *KEYWDS 2 TRANSPORT *EXPDTA NMR, 22 STRUCTURES *AUTHOR J.LU, D.P.CISTOLA, E.LI *REVDAT 1 29-JUL-03 1MX7 0 ; save_ save_MR_file_comment_2 _Org_constr_file_comment.Sf_framecode MR_file_comment_2 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_1mx7 _Org_constr_file_comment.ID 2 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 2 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; ---------------------------------------------------------- # THIS FILE CONTAINS THREE SEPARATE FILES IN THE FOLLOWING ORDER: # 1. apo_crbp1.noe -- # RAW DISTANCE RESTRAINT LIST IN NMRCOMPASS VERSION 2.6 # FORMAT # 2. apo_crbp1.input -- # INPUT VALUES FOR RUNNING DISTGEOM IN THE TINKER PACKAGE # 3. apo_crbp1.key -- # COMPLETE DISTANCE AND DIHEDRAL ANGLE RESTRAINT LIST IN # TINKER FORMAT ; save_