data_wwPDB_remediated_restraints_file_for_PDB_entry_1ngl # This wwPDB archive file contains, for PDB entry 1ngl: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389–396. save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_1ngl _Entry.Title "wwPDB remediated NMR restraints for PDB entry 1ngl" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 1ngl" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_1ngl _Assembly.ID 1 _Assembly.Name 1ngl _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "all free" _Assembly.Molecular_mass 20681.6911 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 "PROTEIN NGAL" 1 $PROTEIN__NGAL_ A . no . . . . . . rr_1ngl 1 stop_ save_ save_PROTEIN__NGAL_ _Entity.Sf_category entity _Entity.Sf_framecode PROTEIN__NGAL_ _Entity.Entry_ID rr_1ngl _Entity.ID 1 _Entity.Name PROTEIN__NGAL_ _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code ; MQDSTSDLIPAPPLSKVPLQ QNFQDNQFQGKWYVVGLAGN AILREDKDPQKMYATIYELK EDKSYNVTSVLFRKKKCDYW IRTFVPGCQPGEFTLGNIKS YPGLTSYLVRVVSTNYNQHA MVFFKKVSQNREYFKITLYG RTKELTSELKENFIRFSKSL GLPENHIVFPVPIDQCIDG ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 179 _Entity.Paramagnetic no _Entity.Thiol_state "all free" _Entity.Parent_entity_ID 1 _Entity.Formula_weight 20681.6911 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . MET . rr_1ngl 1 2 . GLN . rr_1ngl 1 3 . ASP . rr_1ngl 1 4 . SER . rr_1ngl 1 5 . THR . rr_1ngl 1 6 . SER . rr_1ngl 1 7 . ASP . rr_1ngl 1 8 . LEU . rr_1ngl 1 9 . ILE . rr_1ngl 1 10 . PRO . rr_1ngl 1 11 . ALA . rr_1ngl 1 12 . PRO . rr_1ngl 1 13 . PRO . rr_1ngl 1 14 . LEU . rr_1ngl 1 15 . SER . rr_1ngl 1 16 . LYS . rr_1ngl 1 17 . VAL . rr_1ngl 1 18 . PRO . rr_1ngl 1 19 . LEU . rr_1ngl 1 20 . GLN . rr_1ngl 1 21 . GLN . rr_1ngl 1 22 . ASN . rr_1ngl 1 23 . PHE . rr_1ngl 1 24 . GLN . rr_1ngl 1 25 . ASP . rr_1ngl 1 26 . ASN . rr_1ngl 1 27 . GLN . rr_1ngl 1 28 . PHE . rr_1ngl 1 29 . GLN . rr_1ngl 1 30 . GLY . rr_1ngl 1 31 . LYS . rr_1ngl 1 32 . TRP . rr_1ngl 1 33 . TYR . rr_1ngl 1 34 . VAL . rr_1ngl 1 35 . VAL . rr_1ngl 1 36 . GLY . rr_1ngl 1 37 . LEU . rr_1ngl 1 38 . ALA . rr_1ngl 1 39 . GLY . rr_1ngl 1 40 . ASN . rr_1ngl 1 41 . ALA . rr_1ngl 1 42 . ILE . rr_1ngl 1 43 . LEU . rr_1ngl 1 44 . ARG . rr_1ngl 1 45 . GLU . rr_1ngl 1 46 . ASP . rr_1ngl 1 47 . LYS . rr_1ngl 1 48 . ASP . rr_1ngl 1 49 . PRO . rr_1ngl 1 50 . GLN . rr_1ngl 1 51 . LYS . rr_1ngl 1 52 . MET . rr_1ngl 1 53 . TYR . rr_1ngl 1 54 . ALA . rr_1ngl 1 55 . THR . rr_1ngl 1 56 . ILE . rr_1ngl 1 57 . TYR . rr_1ngl 1 58 . GLU . rr_1ngl 1 59 . LEU . rr_1ngl 1 60 . LYS . rr_1ngl 1 61 . GLU . rr_1ngl 1 62 . ASP . rr_1ngl 1 63 . LYS . rr_1ngl 1 64 . SER . rr_1ngl 1 65 . TYR . rr_1ngl 1 66 . ASN . rr_1ngl 1 67 . VAL . rr_1ngl 1 68 . THR . rr_1ngl 1 69 . SER . rr_1ngl 1 70 . VAL . rr_1ngl 1 71 . LEU . rr_1ngl 1 72 . PHE . rr_1ngl 1 73 . ARG . rr_1ngl 1 74 . LYS . rr_1ngl 1 75 . LYS . rr_1ngl 1 76 . LYS . rr_1ngl 1 77 . CYS . rr_1ngl 1 78 . ASP . rr_1ngl 1 79 . TYR . rr_1ngl 1 80 . TRP . rr_1ngl 1 81 . ILE . rr_1ngl 1 82 . ARG . rr_1ngl 1 83 . THR . rr_1ngl 1 84 . PHE . rr_1ngl 1 85 . VAL . rr_1ngl 1 86 . PRO . rr_1ngl 1 87 . GLY . rr_1ngl 1 88 . CYS . rr_1ngl 1 89 . GLN . rr_1ngl 1 90 . PRO . rr_1ngl 1 91 . GLY . rr_1ngl 1 92 . GLU . rr_1ngl 1 93 . PHE . rr_1ngl 1 94 . THR . rr_1ngl 1 95 . LEU . rr_1ngl 1 96 . GLY . rr_1ngl 1 97 . ASN . rr_1ngl 1 98 . ILE . rr_1ngl 1 99 . LYS . rr_1ngl 1 100 . SER . rr_1ngl 1 101 . TYR . rr_1ngl 1 102 . PRO . rr_1ngl 1 103 . GLY . rr_1ngl 1 104 . LEU . rr_1ngl 1 105 . THR . rr_1ngl 1 106 . SER . rr_1ngl 1 107 . TYR . rr_1ngl 1 108 . LEU . rr_1ngl 1 109 . VAL . rr_1ngl 1 110 . ARG . rr_1ngl 1 111 . VAL . rr_1ngl 1 112 . VAL . rr_1ngl 1 113 . SER . rr_1ngl 1 114 . THR . rr_1ngl 1 115 . ASN . rr_1ngl 1 116 . TYR . rr_1ngl 1 117 . ASN . rr_1ngl 1 118 . GLN . rr_1ngl 1 119 . HIS . rr_1ngl 1 120 . ALA . rr_1ngl 1 121 . MET . rr_1ngl 1 122 . VAL . rr_1ngl 1 123 . PHE . rr_1ngl 1 124 . PHE . rr_1ngl 1 125 . LYS . rr_1ngl 1 126 . LYS . rr_1ngl 1 127 . VAL . rr_1ngl 1 128 . SER . rr_1ngl 1 129 . GLN . rr_1ngl 1 130 . ASN . rr_1ngl 1 131 . ARG . rr_1ngl 1 132 . GLU . rr_1ngl 1 133 . TYR . rr_1ngl 1 134 . PHE . rr_1ngl 1 135 . LYS . rr_1ngl 1 136 . ILE . rr_1ngl 1 137 . THR . rr_1ngl 1 138 . LEU . rr_1ngl 1 139 . TYR . rr_1ngl 1 140 . GLY . rr_1ngl 1 141 . ARG . rr_1ngl 1 142 . THR . rr_1ngl 1 143 . LYS . rr_1ngl 1 144 . GLU . rr_1ngl 1 145 . LEU . rr_1ngl 1 146 . THR . rr_1ngl 1 147 . SER . rr_1ngl 1 148 . GLU . rr_1ngl 1 149 . LEU . rr_1ngl 1 150 . LYS . rr_1ngl 1 151 . GLU . rr_1ngl 1 152 . ASN . rr_1ngl 1 153 . PHE . rr_1ngl 1 154 . ILE . rr_1ngl 1 155 . ARG . rr_1ngl 1 156 . PHE . rr_1ngl 1 157 . SER . rr_1ngl 1 158 . LYS . rr_1ngl 1 159 . SER . rr_1ngl 1 160 . LEU . rr_1ngl 1 161 . GLY . rr_1ngl 1 162 . LEU . rr_1ngl 1 163 . PRO . rr_1ngl 1 164 . GLU . rr_1ngl 1 165 . ASN . rr_1ngl 1 166 . HIS . rr_1ngl 1 167 . ILE . rr_1ngl 1 168 . VAL . rr_1ngl 1 169 . PHE . rr_1ngl 1 170 . PRO . rr_1ngl 1 171 . VAL . rr_1ngl 1 172 . PRO . rr_1ngl 1 173 . ILE . rr_1ngl 1 174 . ASP . rr_1ngl 1 175 . GLN . rr_1ngl 1 176 . CYS . rr_1ngl 1 177 . ILE . rr_1ngl 1 178 . ASP . rr_1ngl 1 179 . GLY . rr_1ngl 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . MET 1 1 rr_1ngl 1 . GLN 2 2 rr_1ngl 1 . ASP 3 3 rr_1ngl 1 . SER 4 4 rr_1ngl 1 . THR 5 5 rr_1ngl 1 . SER 6 6 rr_1ngl 1 . ASP 7 7 rr_1ngl 1 . LEU 8 8 rr_1ngl 1 . ILE 9 9 rr_1ngl 1 . PRO 10 10 rr_1ngl 1 . ALA 11 11 rr_1ngl 1 . PRO 12 12 rr_1ngl 1 . PRO 13 13 rr_1ngl 1 . LEU 14 14 rr_1ngl 1 . SER 15 15 rr_1ngl 1 . LYS 16 16 rr_1ngl 1 . VAL 17 17 rr_1ngl 1 . PRO 18 18 rr_1ngl 1 . LEU 19 19 rr_1ngl 1 . GLN 20 20 rr_1ngl 1 . GLN 21 21 rr_1ngl 1 . ASN 22 22 rr_1ngl 1 . PHE 23 23 rr_1ngl 1 . GLN 24 24 rr_1ngl 1 . ASP 25 25 rr_1ngl 1 . ASN 26 26 rr_1ngl 1 . GLN 27 27 rr_1ngl 1 . PHE 28 28 rr_1ngl 1 . GLN 29 29 rr_1ngl 1 . GLY 30 30 rr_1ngl 1 . LYS 31 31 rr_1ngl 1 . TRP 32 32 rr_1ngl 1 . TYR 33 33 rr_1ngl 1 . VAL 34 34 rr_1ngl 1 . VAL 35 35 rr_1ngl 1 . GLY 36 36 rr_1ngl 1 . LEU 37 37 rr_1ngl 1 . ALA 38 38 rr_1ngl 1 . GLY 39 39 rr_1ngl 1 . ASN 40 40 rr_1ngl 1 . ALA 41 41 rr_1ngl 1 . ILE 42 42 rr_1ngl 1 . LEU 43 43 rr_1ngl 1 . ARG 44 44 rr_1ngl 1 . GLU 45 45 rr_1ngl 1 . ASP 46 46 rr_1ngl 1 . LYS 47 47 rr_1ngl 1 . ASP 48 48 rr_1ngl 1 . PRO 49 49 rr_1ngl 1 . GLN 50 50 rr_1ngl 1 . LYS 51 51 rr_1ngl 1 . MET 52 52 rr_1ngl 1 . TYR 53 53 rr_1ngl 1 . ALA 54 54 rr_1ngl 1 . THR 55 55 rr_1ngl 1 . ILE 56 56 rr_1ngl 1 . TYR 57 57 rr_1ngl 1 . GLU 58 58 rr_1ngl 1 . LEU 59 59 rr_1ngl 1 . LYS 60 60 rr_1ngl 1 . GLU 61 61 rr_1ngl 1 . ASP 62 62 rr_1ngl 1 . LYS 63 63 rr_1ngl 1 . SER 64 64 rr_1ngl 1 . TYR 65 65 rr_1ngl 1 . ASN 66 66 rr_1ngl 1 . VAL 67 67 rr_1ngl 1 . THR 68 68 rr_1ngl 1 . SER 69 69 rr_1ngl 1 . VAL 70 70 rr_1ngl 1 . LEU 71 71 rr_1ngl 1 . PHE 72 72 rr_1ngl 1 . ARG 73 73 rr_1ngl 1 . LYS 74 74 rr_1ngl 1 . LYS 75 75 rr_1ngl 1 . LYS 76 76 rr_1ngl 1 . CYS 77 77 rr_1ngl 1 . ASP 78 78 rr_1ngl 1 . TYR 79 79 rr_1ngl 1 . TRP 80 80 rr_1ngl 1 . ILE 81 81 rr_1ngl 1 . ARG 82 82 rr_1ngl 1 . THR 83 83 rr_1ngl 1 . PHE 84 84 rr_1ngl 1 . VAL 85 85 rr_1ngl 1 . PRO 86 86 rr_1ngl 1 . GLY 87 87 rr_1ngl 1 . CYS 88 88 rr_1ngl 1 . GLN 89 89 rr_1ngl 1 . PRO 90 90 rr_1ngl 1 . GLY 91 91 rr_1ngl 1 . GLU 92 92 rr_1ngl 1 . PHE 93 93 rr_1ngl 1 . THR 94 94 rr_1ngl 1 . LEU 95 95 rr_1ngl 1 . GLY 96 96 rr_1ngl 1 . ASN 97 97 rr_1ngl 1 . ILE 98 98 rr_1ngl 1 . LYS 99 99 rr_1ngl 1 . SER 100 100 rr_1ngl 1 . TYR 101 101 rr_1ngl 1 . PRO 102 102 rr_1ngl 1 . GLY 103 103 rr_1ngl 1 . LEU 104 104 rr_1ngl 1 . THR 105 105 rr_1ngl 1 . SER 106 106 rr_1ngl 1 . TYR 107 107 rr_1ngl 1 . LEU 108 108 rr_1ngl 1 . VAL 109 109 rr_1ngl 1 . ARG 110 110 rr_1ngl 1 . VAL 111 111 rr_1ngl 1 . VAL 112 112 rr_1ngl 1 . SER 113 113 rr_1ngl 1 . THR 114 114 rr_1ngl 1 . ASN 115 115 rr_1ngl 1 . TYR 116 116 rr_1ngl 1 . ASN 117 117 rr_1ngl 1 . GLN 118 118 rr_1ngl 1 . HIS 119 119 rr_1ngl 1 . ALA 120 120 rr_1ngl 1 . MET 121 121 rr_1ngl 1 . VAL 122 122 rr_1ngl 1 . PHE 123 123 rr_1ngl 1 . PHE 124 124 rr_1ngl 1 . LYS 125 125 rr_1ngl 1 . LYS 126 126 rr_1ngl 1 . VAL 127 127 rr_1ngl 1 . SER 128 128 rr_1ngl 1 . GLN 129 129 rr_1ngl 1 . ASN 130 130 rr_1ngl 1 . ARG 131 131 rr_1ngl 1 . GLU 132 132 rr_1ngl 1 . TYR 133 133 rr_1ngl 1 . PHE 134 134 rr_1ngl 1 . LYS 135 135 rr_1ngl 1 . ILE 136 136 rr_1ngl 1 . THR 137 137 rr_1ngl 1 . LEU 138 138 rr_1ngl 1 . TYR 139 139 rr_1ngl 1 . GLY 140 140 rr_1ngl 1 . ARG 141 141 rr_1ngl 1 . THR 142 142 rr_1ngl 1 . LYS 143 143 rr_1ngl 1 . GLU 144 144 rr_1ngl 1 . LEU 145 145 rr_1ngl 1 . THR 146 146 rr_1ngl 1 . SER 147 147 rr_1ngl 1 . GLU 148 148 rr_1ngl 1 . LEU 149 149 rr_1ngl 1 . LYS 150 150 rr_1ngl 1 . GLU 151 151 rr_1ngl 1 . ASN 152 152 rr_1ngl 1 . PHE 153 153 rr_1ngl 1 . ILE 154 154 rr_1ngl 1 . ARG 155 155 rr_1ngl 1 . PHE 156 156 rr_1ngl 1 . SER 157 157 rr_1ngl 1 . LYS 158 158 rr_1ngl 1 . SER 159 159 rr_1ngl 1 . LEU 160 160 rr_1ngl 1 . GLY 161 161 rr_1ngl 1 . LEU 162 162 rr_1ngl 1 . PRO 163 163 rr_1ngl 1 . GLU 164 164 rr_1ngl 1 . ASN 165 165 rr_1ngl 1 . HIS 166 166 rr_1ngl 1 . ILE 167 167 rr_1ngl 1 . VAL 168 168 rr_1ngl 1 . PHE 169 169 rr_1ngl 1 . PRO 170 170 rr_1ngl 1 . VAL 171 171 rr_1ngl 1 . PRO 172 172 rr_1ngl 1 . ILE 173 173 rr_1ngl 1 . ASP 174 174 rr_1ngl 1 . GLN 175 175 rr_1ngl 1 . CYS 176 176 rr_1ngl 1 . ILE 177 177 rr_1ngl 1 . ASP 178 178 rr_1ngl 1 . GLY 179 179 rr_1ngl 1 stop_ save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_1ngl _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 1 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_1ngl _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 1ngl.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_1ngl 1 1 1ngl.mr . . "MR format" 2 "nomenclature mapping" "Not applicable" "Not applicable" 0 rr_1ngl 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_1ngl _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER TRANSPORT PROTEIN 23-FEB-99 1NGL *TITLE HUMAN NEUTROPHIL GELATINASE-ASSOCIATED LIPOCALIN (HNGAL), *TITLE 2 REGULARISED AVERAGE NMR STRUCTURE *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: NGAL; *COMPND 3 CHAIN: A; *COMPND 4 FRAGMENT: MATURE SEQUENCE; *COMPND 5 SYNONYM: HNGAL, HNL; *COMPND 6 ENGINEERED: YES; *COMPND 7 BIOLOGICAL_UNIT: MONOMER; *COMPND 8 OTHER_DETAILS: METHIONINE PRECEDES MATURE PROTEIN SEQUENCE *SOURCE MOL_ID: 1; *SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; *SOURCE 3 ORGANISM_COMMON: HUMAN; *SOURCE 4 CELL: NEUTROPHIL; *SOURCE 5 CELLULAR_LOCATION: EXTRACELLULAR MATRIX; *SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; *SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21[DE3]; *SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET11A *KEYWDS TRANSPORT PROTEIN, MMP-9 COMPONENT, LIPOCALIN *EXPDTA NMR *AUTHOR M.COLES, T.DIERCKS, B.MUEHLENWEG, S.BARTSCH, V.ZOELZER, *AUTHOR 2 H.TSCHESCHE, H.KESSLER *REVDAT 1 26-MAY-99 1NGL 0 *REVDAT 2 07-JUN-99 1NGL 1 REMARK ; save_