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A
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1
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1
1
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8.21
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1
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1
1
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7.70
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1
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1
1
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7.65
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-7.831
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8.07
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10.15
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5.93
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-8.944
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5.14
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-8.517
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2.78
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-7.593
12.259
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1
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1
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3.88
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-8.048
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1
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1
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2.47
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1
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1
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2.91
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1
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1
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3.73
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1
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1
1
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2.27
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1
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1
1
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3.84
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1
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1
1
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2.23
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1
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1
1
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11.03
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2
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1
2
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2
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1
2
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12.18
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10.96
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10.74
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5.01
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5.68
-12.412
-8.682
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2
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1
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5.93
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2
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1
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7.08
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-8.959
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7.50
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2
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1
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4.94
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2
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1
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3.08
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-4.911
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2
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1
2
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2
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1
2
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4.84
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2
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2
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8.20
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-13.495
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3
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3
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6.58
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3
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3
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11.41
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10.42
-8.916
-14.132
11.812
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-14.714
10.949
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9.92
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-14.229
9.536
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3
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10.13
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-12.805
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9.81
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-14.413
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3
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14.46
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-14.756
7.651
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-13.055
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8.43
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-12.093
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3
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3.78
-8.692
-10.886
9.921
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1
3
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2.94
-8.116
-10.752
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3
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1
3
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3.56
-8.228
-9.549
11.671
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3
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1
3
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2.60
-8.918
-8.836
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3
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1
3
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2.61
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-7.494
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3
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1
3
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1.52
-9.168
-6.604
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3
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1
3
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1.26
-9.994
-7.095
9.511
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3
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1
3
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6.08
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-7.994
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3
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1
3
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6.16
-9.847
-9.286
8.486
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3
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1
3
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4.73
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-9.648
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3
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1
3
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12.96
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4
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4
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16.67
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4
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4
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16.16
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-14.820
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4
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15.25
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-13.532
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15.41
-8.011
-13.184
5.160
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4
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14.74
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-11.818
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4
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4
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13.25
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-10.797
5.575
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12.04
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-11.598
3.872
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16.78
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-11.049
2.562
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12.02
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-10.613
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4
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13.20
-6.920
-9.842
5.397
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4
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11.07
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-9.223
6.689
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4
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14.04
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-9.765
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4
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13.02
-5.813
-8.955
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4
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12.93
-6.494
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8.358
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4
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11.65
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-6.588
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4
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13.44
-6.345
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11.51
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-5.690
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11.96
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-5.936
7.030
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4
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9.59
-8.617
-4.930
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4
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10.35
-7.755
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6.376
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4
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12.78
-7.024
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4
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13.10
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1.546
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5
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13.28
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15.01
-4.328
-11.861
1.940
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1.594
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5
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5
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-5.149
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3.445
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-3.659
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1.586
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-5.600
1.192
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5
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-2.914
-7.195
2.883
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5
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11.47
-3.854
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3.850
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5
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-3.678
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5.261
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5
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10.73
-3.922
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6.183
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1
5
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10.97
-4.344
-4.763
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5
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1
5
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O
10.63
-3.659
-6.226
7.481
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1
5
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N
11.44
-3.200
-7.452
7.926
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5
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1
5
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16.67
-2.977
-7.622
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1
5
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O
11.04
-3.010
-8.452
6.895
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5
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1
5
1.00
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C
11.21
-2.553
-9.825
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5
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1
5
1.00
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C
10.82
-3.258
-8.102
5.633
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5
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1
5
1.00
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C
6.61
-3.324
-5.232
-0.362
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6
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1
6
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4.76
-4.676
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-0.898
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6
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1
6
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4.72
-2.159
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-0.911
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6
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O
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-3.076
-3.653
-0.325
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6
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O
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-4.117
-2.755
0.091
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6
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3.35
-3.562
-1.600
0.900
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6
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1
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1.95
-3.258
-1.999
2.257
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6
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1.66
-2.284
-0.956
0.355
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6
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1.00
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0.448
0.620
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6
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-1.591
1.207
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1
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2.51
-1.900
-1.692
2.554
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6
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1
6
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3.421
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6
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1
6
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-3.957
3.070
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1
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1.00
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C
2.90
-0.525
-4.717
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6
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1
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N
1.00
-0.896
-3.954
5.198
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6
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1
6
1.00
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C
1.96
-0.846
-4.197
6.591
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6
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1
6
1.00
1
C
1.00
-0.428
-5.351
7.140
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6
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1
6
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1.00
-1.257
-3.211
7.409
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6
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1
6
1.00
1
N
2.45
-1.726
-2.075
6.868
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6
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1
6
1.00
1
C
1.00
-1.858
-1.740
5.582
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6
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1
6
1.00
1
N
1.92
-1.413
-2.729
4.791
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6
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1
6
1.00
1
C
3.21
-2.966
1.445
-0.445
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7
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P
DC
1
7
1.00
1
P
3.02
-2.898
2.841
0.070
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7
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1
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1.00
1
O
3.93
-4.269
0.893
-0.866
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7
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1
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1.00
1
O
2.75
-1.982
1.349
-1.690
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7
ATOM
A
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1
7
1.00
1
O
1.00
-0.649
1.818
-1.593
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7
ATOM
A
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DC
1
7
1.00
1
C
2.19
-0.122
2.116
-2.969
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7
ATOM
A
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DC
1
7
1.00
1
C
2.53
0.044
0.848
-3.653
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7
ATOM
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DC
1
7
1.00
1
O
1.25
-1.099
2.946
-3.807
A
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7
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A
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DC
1
7
1.00
1
C
4.86
-0.413
3.957
-4.543
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7
ATOM
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DC
1
7
1.00
1
O
2.46
-1.744
1.933
-4.734
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7
ATOM
A
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DC
1
7
1.00
1
C
1.41
-0.706
0.823
-4.852
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7
ATOM
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DC
1
7
1.00
1
C
4.20
-1.288
-0.532
-4.998
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N1
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7
ATOM
A
N1
DC
1
7
1.00
1
N
2.55
-1.638
-0.968
-6.278
A
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7
ATOM
A
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1
7
1.00
1
C
1.46
-1.432
-0.213
-7.235
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7
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1
7
1.00
1
O
1.02
-2.187
-2.194
-6.437
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N3
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7
ATOM
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N3
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1
7
1.00
1
N
3.20
-2.391
-2.977
-5.373
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7
ATOM
A
C4
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1
7
1.00
1
C
3.63
-2.950
-4.182
-5.578
A
N4
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7
ATOM
A
N4
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1
7
1.00
1
N
1.00
-2.036
-2.563
-4.055
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7
ATOM
A
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1
7
1.00
1
C
1.70
-1.490
-1.345
-3.915
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7
ATOM
A
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1
7
1.00
1
C
7.56
-4.721
2.093
-7.672
A
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8
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A
N1
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1
8
1.00
1
N
6.55
-5.106
1.015
-8.447
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8
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1
8
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1
C
1.27
-5.420
-0.119
-7.740
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8
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1
8
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N
7.65
-5.345
-0.284
-6.368
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8
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1
8
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1
C
8.27
-4.901
0.865
-5.662
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8
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1
8
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1
C
7.13
-4.607
1.982
-6.315
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8
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1
8
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1
C
1.18
-5.142
1.060
-9.670
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8
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8
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O
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-5.619
-1.373
-5.861
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8
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8
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O
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-4.787
0.698
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8
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8
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7.03
-4.474
3.371
-8.346
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8
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8
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-4.898
4.581
-7.535
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8
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8
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-4.065
5.655
-8.196
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8
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8
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8.89
-2.750
4.928
-8.495
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8
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8
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-4.702
5.981
-9.425
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O
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-3.078
3.519
-8.551
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8
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O
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-1.635
5.180
-7.505
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-2.092
4.967
-6.174
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O
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-1.174
5.330
-4.916
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P
8.89
-0.125
6.282
-5.361
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O
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-2.085
5.700
-3.810
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8
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O
6.52
-4.300
7.335
-10.196
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9
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P
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1
9
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1
P
7.15
-2.830
7.385
-10.256
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9
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1
9
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O
8.04
-5.054
8.460
-9.578
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9
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9
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O
8.83
-4.854
7.118
-11.674
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9
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O
8.24
-4.012
6.596
-12.697
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9
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1
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C
5.90
-4.813
5.701
-13.608
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9
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1
9
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C
3.92
-5.402
4.654
-12.796
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9
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1
9
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O
6.51
-5.980
6.410
-14.291
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9
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C
2.82
-6.163
5.881
-15.611
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9
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O
5.18
-7.156
6.117
-13.372
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9
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1
9
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C
3.92
-6.814
4.743
-12.813
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9
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1
9
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1
C
3.02
-7.277
4.476
-11.456
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9
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1
9
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N
4.30
-7.424
5.371
-10.422
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9
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1
9
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1
C
3.48
-7.808
4.805
-9.307
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9
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N7
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1
9
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1
N
5.50
-7.934
3.457
-9.631
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9
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1
9
1.00
1
C
3.65
-8.319
2.332
-8.830
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9
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1
9
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1
C
2.55
-8.622
2.297
-7.638
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9
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1
9
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1
O
3.63
-8.326
1.158
-9.571
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9
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1
9
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N
5.94
-8.004
1.062
-10.902
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9
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1
9
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1
C
1.81
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-0.165
-11.447
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9
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1
9
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1
N
5.11
-7.633
2.089
-11.649
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9
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1
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1
N
2.84
-7.624
3.244
-10.957
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9
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1
9
1.00
1
C
3.43
-7.374
6.415
-16.522
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DG
10
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A
P
DG
1
10
1.00
1
P
1.46
-7.017
6.068
-17.918
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10
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1
10
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1
O
1.62
-7.720
7.796
-16.169
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10
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1
10
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O
1.00
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5.491
-16.075
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10
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1
10
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O
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-8.626
4.128
-16.488
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10
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DG
1
10
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1
C
6.66
-9.979
3.532
-16.190
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10
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DG
1
10
1.00
1
C
3.47
-10.123
3.315
-14.762
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10
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1
10
1.00
1
O
2.16
-11.148
4.427
-16.607
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10
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DG
1
10
1.00
1
C
8.92
-12.280
3.659
-16.990
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10
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DG
1
10
1.00
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O
5.60
-11.533
5.103
-15.307
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10
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1
10
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C
7.99
-11.299
3.978
-14.319
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10
ATOM
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DG
1
10
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C
9.62
-11.093
4.395
-12.935
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10
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N9
DG
1
10
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1
N
8.94
-10.695
5.628
-12.465
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10
ATOM
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1
10
1.00
1
C
9.26
-10.609
5.672
-11.160
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10
ATOM
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N7
DG
1
10
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1
N
7.89
-10.977
4.395
-10.753
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10
ATOM
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DG
1
10
1.00
1
C
5.83
-11.090
3.839
-9.456
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10
ATOM
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DG
1
10
1.00
1
C
5.50
-10.882
4.384
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10
ATOM
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O6
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1
10
1.00
1
O
6.83
-11.489
2.501
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10
ATOM
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N1
DG
1
10
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1
N
5.45
-11.748
1.797
-10.670
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10
ATOM
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C2
DG
1
10
1.00
1
C
7.28
-12.120
0.517
-10.539
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10
ATOM
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N2
DG
1
10
1.00
1
N
5.71
-11.651
2.310
-11.871
A
N3
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10
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A
N3
DG
1
10
1.00
1
N
6.92
-11.269
3.599
-11.841
A
C4
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10
ATOM
A
C4
DG
1
10
1.00
1
C
14.15
13.474
-4.372
1.717
B
O5'
DC
11
ATOM
B
O5'
DC
1
1
1.00
1
O
15.47
13.782
-3.119
2.324
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C5'
DC
11
ATOM
B
C5'
DC
1
1
1.00
1
C
15.06
14.277
-3.290
3.741
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C4'
DC
11
ATOM
B
C4'
DC
1
1
1.00
1
C
12.57
14.324
-1.996
4.392
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O4'
DC
11
ATOM
B
O4'
DC
1
1
1.00
1
O
14.44
13.375
-4.167
4.611
B
C3'
DC
11
ATOM
B
C3'
DC
1
1
1.00
1
C
15.28
14.180
-4.889
5.550
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O3'
DC
11
ATOM
B
O3'
DC
1
1
1.00
1
O
12.17
12.480
-3.159
5.309
B
C2'
DC
11
ATOM
B
C2'
DC
1
1
1.00
1
C
12.47
13.410
-1.962
5.485
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C1'
DC
11
ATOM
B
C1'
DC
1
1
1.00
1
C
12.23
12.723
-0.664
5.445
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N1
DC
11
ATOM
B
N1
DC
1
1
1.00
1
N
11.28
12.385
-0.038
6.651
B
C2
DC
11
ATOM
B
C2
DC
1
1
1.00
1
C
10.70
12.674
-0.599
7.721
B
O2
DC
11
ATOM
B
O2
DC
1
1
1.00
1
O
10.15
11.755
1.159
6.618
B
N3
DC
11
ATOM
B
N3
DC
1
1
1.00
1
N
11.32
11.458
1.726
5.444
B
C4
DC
11
ATOM
B
C4
DC
1
1
1.00
1
C
10.78
10.823
2.899
5.457
B
N4
DC
11
ATOM
B
N4
DC
1
1
1.00
1
N
9.55
11.793
1.113
4.205
B
C5
DC
11
ATOM
B
C5
DC
1
1
1.00
1
C
11.82
12.419
-0.071
4.251
B
C6
DC
11
ATOM
B
C6
DC
1
1
1.00
1
C
17.01
13.786
-6.391
5.946
B
P
DC
12
ATOM
B
P
DC
1
2
1.00
1
P
13.06
14.926
-6.987
6.690
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OP1
DC
12
ATOM
B
OP1
DC
1
2
1.00
1
O
16.54
13.247
-7.076
4.737
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OP2
DC
12
ATOM
B
OP2
DC
1
2
1.00
1
O
14.56
12.600
-6.220
6.991
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O5'
DC
12
ATOM
B
O5'
DC
1
2
1.00
1
O
10.51
12.877
-6.150
8.379
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C5'
DC
12
ATOM
B
C5'
DC
1
2
1.00
1
C
10.18
11.598
-5.931
9.148
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C4'
DC
12
ATOM
B
C4'
DC
1
2
1.00
1
C
6.68
11.044
-4.640
8.828
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O4'
DC
12
ATOM
B
O4'
DC
1
2
1.00
1
O
8.39
10.479
-6.937
8.870
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C3'
DC
12
ATOM
B
C3'
DC
1
2
1.00
1
C
6.23
9.734
-7.061
10.080
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O3'
DC
12
ATOM
B
O3'
DC
1
2
1.00
1
O
6.05
9.612
-6.198
7.867
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C2'
DC
12
ATOM
B
C2'
DC
1
2
1.00
1
C
7.77
9.682
-4.820
8.485
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C1'
DC
12
ATOM
B
C1'
DC
1
2
1.00
1
C
5.97
9.246
-3.653
7.714
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N1
DC
12
ATOM
B
N1
DC
1
2
1.00
1
N
8.73
9.012
-2.469
8.409
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C2
DC
12
ATOM
B
C2
DC
1
2
1.00
1
C
4.26
9.128
-2.467
9.640
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O2
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12
ATOM
B
O2
DC
1
2
1.00
1
O
8.57
8.663
-1.353
7.722
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N3
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12
ATOM
B
N3
DC
1
2
1.00
1
N
7.01
8.537
-1.401
6.398
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C4
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12
ATOM
B
C4
DC
1
2
1.00
1
C
8.27
8.211
-0.270
5.761
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N4
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12
ATOM
B
N4
DC
1
2
1.00
1
N
8.84
8.742
-2.604
5.667
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C5
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12
ATOM
B
C5
DC
1
2
1.00
1
C
8.33
9.087
-3.699
6.359
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C6
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12
ATOM
B
C6
DC
1
2
1.00
1
C
7.79
9.796
-8.415
10.926
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P
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13
ATOM
B
P
DA
1
3
1.00
1
P
5.17
11.212
-8.828
11.133
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OP1
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13
ATOM
B
OP1
DA
1
3
1.00
1
O
1.00
8.842
-9.346
10.296
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OP2
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13
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B
OP2
DA
1
3
1.00
1
O
6.96
9.245
-7.985
12.349
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O5'
DA
13
ATOM
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O5'
DA
1
3
1.00
1
O
5.11
10.068
-7.259
13.248
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C5'
DA
13
ATOM
B
C5'
DA
1
3
1.00
1
C
3.33
9.225
-6.318
14.070
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C4'
DA
13
ATOM
B
C4'
DA
1
3
1.00
1
C
4.17
8.620
-5.346
13.192
B
O4'
DA
13
ATOM
B
O4'
DA
1
3
1.00
1
O
1.25
8.072
-6.981
14.814
B
C3'
DA
13
ATOM
B
C3'
DA
1
3
1.00
1
C
1.00
7.896
-6.319
16.061
B
O3'
DA
13
ATOM
B
O3'
DA
1
3
1.00
1
O
1.00
6.884
-6.777
13.895
B
C2'
DA
13
ATOM
B
C2'
DA
1
3
1.00
1
C
2.44
7.204
-5.472
13.183
B
C1'
DA
13
ATOM
B
C1'
DA
1
3
1.00
1
C
2.99
6.794
-5.449
11.781
B
N9
DA
13
ATOM
B
N9
DA
1
3
1.00
1
N
2.47
6.816
-6.501
10.900
B
C8
DA
13
ATOM
B
C8
DA
1
3
1.00
1
C
3.76
6.461
-6.180
9.686
B
N7
DA
13
ATOM
B
N7
DA
1
3
1.00
1
N
2.31
6.174
-4.825
9.772
B
C5
DA
13
ATOM
B
C5
DA
1
3
1.00
1
C
3.96
5.746
-3.886
8.813
B
C6
DA
13
ATOM
B
C6
DA
1
3
1.00
1
C
1.00
5.567
-4.178
7.518
B
N6
DA
13
ATOM
B
N6
DA
1
3
1.00
1
N
1.74
5.519
-2.620
9.232
B
N1
DA
13
ATOM
B
N1
DA
1
3
1.00
1
N
3.42
5.743
-2.322
10.525
B
C2
DA
13
ATOM
B
C2
DA
1
3
1.00
1
C
1.71
6.159
-3.112
11.512
B
N3
DA
13
ATOM
B
N3
DA
1
3
1.00
1
N
1.00
6.355
-4.367
11.063
B
C4
DA
13
ATOM
B
C4
DA
1
3
1.00
1
C
5.67
6.628
-6.669
16.986
B
P
DG
14
ATOM
B
P
DG
1
4
1.00
1
P
1.00
7.076
-6.380
18.365
B
OP1
DG
14
ATOM
B
OP1
DG
1
4
1.00
1
O
1.85
6.108
-8.015
16.637
B
OP2
DG
14
ATOM
B
OP2
DG
1
4
1.00
1
O
1.00
5.571
-5.559
16.552
B
O5'
DG
14
ATOM
B
O5'
DG
1
4
1.00
1
O
1.96
5.981
-4.206
16.531
B
C5'
DG
14
ATOM
B
C5'
DG
1
4
1.00
1
C
5.41
4.872
-3.302
16.054
B
C4'
DG
14
ATOM
B
C4'
DG
1
4
1.00
1
C
6.86
4.750
-3.346
14.612
B
O4'
DG
14
ATOM
B
O4'
DG
1
4
1.00
1
O
5.87
3.477
-3.545
16.629
B
C3'
DG
14
ATOM
B
C3'
DG
1
4
1.00
1
C
7.41
2.976
-2.294
17.114
B
O3'
DG
14
ATOM
B
O3'
DG
1
4
1.00
1
O
5.68
2.682
-4.064
15.438
B
C2'
DG
14
ATOM
B
C2'
DG
1
4
1.00
1
C
4.25
3.383
-3.394
14.260
B
C1'
DG
14
ATOM
B
C1'
DG
1
4
1.00
1
C
3.28
3.293
-4.088
12.982
B
N9
DG
14
ATOM
B
N9
DG
1
4
1.00
1
N
1.75
3.500
-5.424
12.739
B
C8
DG
14
ATOM
B
C8
DG
1
4
1.00
1
C
1.00
3.347
-5.745
11.481
B
N7
DG
14
ATOM
B
N7
DG
1
4
1.00
1
N
2.18
3.015
-4.547
10.855
B
C5
DG
14
ATOM
B
C5
DG
1
4
1.00
1
C
1.00
2.718
-4.264
9.487
B
C6
DG
14
ATOM
B
C6
DG
1
4
1.00
1
C
1.00
2.709
-5.034
8.531
B
O6
DG
14
ATOM
B
O6
DG
1
4
1.00
1
O
1.00
2.425
-2.917
9.291
B
N1
DG
14
ATOM
B
N1
DG
1
4
1.00
1
N
2.70
2.432
-1.958
10.279
B
C2
DG
14
ATOM
B
C2
DG
1
4
1.00
1
C
3.62
2.128
-0.704
9.899
B
N2
DG
14
ATOM
B
N2
DG
1
4
1.00
1
N
4.70
2.716
-2.207
11.550
B
N3
DG
14
ATOM
B
N3
DG
1
4
1.00
1
N
3.37
2.988
-3.512
11.765
B
C4
DG
14
ATOM
B
C4
DG
1
4
1.00
1
C
8.45
1.425
-2.135
17.477
B
P
DT
15
ATOM
B
P
DT
1
5
1.00
1
P
5.30
1.331
-1.279
18.676
B
OP1
DT
15
ATOM
B
OP1
DT
1
5
1.00
1
O
5.21
0.771
-3.475
17.466
B
OP2
DT
15
ATOM
B
OP2
DT
1
5
1.00
1
O
9.04
0.873
-1.281
16.246
B
O5'
DT
15
ATOM
B
O5'
DT
1
5
1.00
1
O
9.51
1.595
-0.133
15.791
B
C5'
DT
15
ATOM
B
C5'
DT
1
5
1.00
1
C
8.86
0.852
0.552
14.669
B
C4'
DT
15
ATOM
B
C4'
DT
1
5
1.00
1
C
5.62
0.870
-0.257
13.467
B
O4'
DT
15
ATOM
B
O4'
DT
1
5
1.00
1
O
10.62
-0.618
0.803
14.977
B
C3'
DT
15
ATOM
B
C3'
DT
1
5
1.00
1
C
12.56
-1.031
2.032
14.396
B
O3'
DT
15
ATOM
B
O3'
DT
1
5
1.00
1
O
10.74
-1.314
-0.332
14.260
B
C2'
DT
15
ATOM
B
C2'
DT
1
5
1.00
1
C
9.42
-0.463
-0.427
13.015
B
C1'
DT
15
ATOM
B
C1'
DT
1
5
1.00
1
C
8.65
-0.547
-1.716
12.331
B
N1
DT
15
ATOM
B
N1
DT
1
5
1.00
1
N
8.03
-0.854
-1.737
10.985
B
C2
DT
15
ATOM
B
C2
DT
1
5
1.00
1
C
5.31
-1.120
-0.736
10.341
B
O2
DT
15
ATOM
B
O2
DT
1
5
1.00
1
O
9.38
-0.844
-2.988
10.421
B
N3
DT
15
ATOM
B
N3
DT
1
5
1.00
1
N
7.13
-0.574
-4.188
11.057
B
C4
DT
15
ATOM
B
C4
DT
1
5
1.00
1
C
3.41
-0.551
-5.222
10.407
B
O4
DT
15
ATOM
B
O4
DT
1
5
1.00
1
O
7.75
-0.310
-4.088
12.482
B
C5
DT
15
ATOM
B
C5
DT
1
5
1.00
1
C
9.27
-0.057
-5.330
13.279
B
C7
DT
15
ATOM
B
C7
DT
1
5
1.00
1
C
8.24
-0.305
-2.873
13.032
B
C6
DT
15
ATOM
B
C6
DT
1
5
1.00
1
C
13.15
-2.305
2.792
15.001
B
P
DA
16
ATOM
B
P
DA
1
6
1.00
1
P
17.00
-1.908
4.213
15.150
B
OP1
DA
16
ATOM
B
OP1
DA
1
6
1.00
1
O
14.80
-2.813
2.032
16.173
B
OP2
DA
16
ATOM
B
OP2
DA
1
6
1.00
1
O
12.73
-3.390
2.683
13.845
B
O5'
DA
16
ATOM
B
O5'
DA
1
6
1.00
1
O
12.12
-3.066
3.087
12.525
B
C5'
DA
16
ATOM
B
C5'
DA
1
6
1.00
1
C
10.95
-4.128
2.619
11.562
B
C4'
DA
16
ATOM
B
C4'
DA
1
6
1.00
1
C
7.11
-3.921
1.239
11.187
B
O4'
DA
16
ATOM
B
O4'
DA
1
6
1.00
1
O
9.72
-5.552
2.709
12.101
B
C3'
DA
16
ATOM
B
C3'
DA
1
6
1.00
1
C
13.87
-6.386
3.211
11.066
B
O3'
DA
16
ATOM
B
O3'
DA
1
6
1.00
1
O
10.01
-5.902
1.266
12.427
B
C2'
DA
16
ATOM
B
C2'
DA
1
6
1.00
1
C
6.24
-5.119
0.509
11.362
B
C1'
DA
16
ATOM
B
C1'
DA
1
6
1.00
1
C
5.17
-4.747
-0.877
11.660
B
N9
DA
16
ATOM
B
N9
DA
1
6
1.00
1
N
3.56
-4.420
-1.457
12.858
B
C8
DA
16
ATOM
B
C8
DA
1
6
1.00
1
C
3.22
-4.096
-2.726
12.761
B
N7
DA
16
ATOM
B
N7
DA
1
6
1.00
1
N
3.16
-4.224
-3.001
11.408
B
C5
DA
16
ATOM
B
C5
DA
1
6
1.00
1
C
3.03
-4.038
-4.178
10.649
B
C6
DA
16
ATOM
B
C6
DA
1
6
1.00
1
C
1.00
-3.627
-5.342
11.155
B
N6
DA
16
ATOM
B
N6
DA
1
6
1.00
1
N
4.40
-4.291
-4.111
9.324
B
N1
DA
16
ATOM
B
N1
DA
1
6
1.00
1
N
3.18
-4.694
-2.951
8.805
B
C2
DA
16
ATOM
B
C2
DA
1
6
1.00
1
C
3.37
-4.891
-1.780
9.407
B
N3
DA
16
ATOM
B
N3
DA
1
6
1.00
1
N
4.42
-4.637
-1.874
10.721
B
C4
DA
16
ATOM
B
C4
DA
1
6
1.00
1
C
15.87
-7.635
4.128
11.442
B
P
DC
17
ATOM
B
P
DC
1
7
1.00
1
P
18.09
-8.097
4.757
10.182
B
OP1
DC
17
ATOM
B
OP1
DC
1
7
1.00
1
O
13.85
-7.247
4.979
12.594
B
OP2
DC
17
ATOM
B
OP2
DC
1
7
1.00
1
O
20.13
-8.713
3.066
11.941
B
O5'
DC
17
ATOM
B
O5'
DC
1
7
1.00
1
O
18.46
-9.744
2.598
11.076
B
C5'
DC
17
ATOM
B
C5'
DC
1
7
1.00
1
C
18.57
-9.156
2.065
9.789
B
C4'
DC
17
ATOM
B
C4'
DC
1
7
1.00
1
C
16.30
-8.187
1.027
10.077
B
O4'
DC
17
ATOM
B
O4'
DC
1
7
1.00
1
O
16.60
-10.201
1.430
8.873
B
C3'
DC
17
ATOM
B
C3'
DC
1
7
1.00
1
C
18.29
-9.993
1.794
7.510
B
O3'
DC
17
ATOM
B
O3'
DC
1
7
1.00
1
O
16.30
-9.991
-0.056
9.060
B
C2'
DC
17
ATOM
B
C2'
DC
1
7
1.00
1
C
15.04
-8.511
-0.140
9.345
B
C1'
DC
17
ATOM
B
C1'
DC
1
7
1.00
1
C
13.93
-8.137
-1.307
10.153
B
N1
DC
17
ATOM
B
N1
DC
1
7
1.00
1
N
14.47
-7.963
-2.523
9.505
B
C2
DC
17
ATOM
B
C2
DC
1
7
1.00
1
C
15.08
-8.170
-2.578
8.287
B
O2
DC
17
ATOM
B
O2
DC
1
7
1.00
1
O
13.11
-7.580
-3.609
10.217
B
N3
DC
17
ATOM
B
N3
DC
1
7
1.00
1
N
12.29
-7.386
-3.509
11.532
B
C4
DC
17
ATOM
B
C4
DC
1
7
1.00
1
C
8.06
-6.997
-4.605
12.189
B
N4
DC
17
ATOM
B
N4
DC
1
7
1.00
1
N
11.50
-7.580
-2.279
12.230
B
C5
DC
17
ATOM
B
C5
DC
1
7
1.00
1
C
14.58
-7.954
-1.211
11.505
B
C6
DC
17
ATOM
B
C6
DC
1
7
1.00
1
C
15.66
-12.551
-3.110
7.965
B
N1
BRU
18
HETATM
B
N1
BRU
1
8
1.00
1
N
13.68
-12.000
-4.367
8.142
B
C2
BRU
18
HETATM
B
C2
BRU
1
8
1.00
1
C
13.97
-11.430
-4.582
9.369
B
N3
BRU
18
HETATM
B
N3
BRU
1
8
1.00
1
N
13.22
-11.360
-3.687
10.412
B
C4
BRU
18
HETATM
B
C4
BRU
1
8
1.00
1
C
14.05
-11.990
-2.428
10.160
B
C5
BRU
18
HETATM
B
C5
BRU
1
8
1.00
1
C
11.09
-12.549
-2.186
8.977
B
C6
BRU
18
HETATM
B
C6
BRU
1
8
1.00
1
C
12.90
-12.021
-5.221
7.282
B
O2
BRU
18
HETATM
B
O2
BRU
1
8
1.00
1
O
14.58
-10.673
-3.959
11.388
B
O4
BRU
18
HETATM
B
O4
BRU
1
8
1.00
1
O
12.40
-11.977
-1.233
11.541
B
BR
BRU
18
HETATM
B
BR
BRU
1
8
1.00
1
BR
13.04
-13.113
-2.803
6.646
B
C1'
BRU
18
HETATM
B
C1'
BRU
1
8
1.00
1
C
12.51
-14.075
-1.631
6.615
B
C2'
BRU
18
HETATM
B
C2'
BRU
1
8
1.00
1
C
14.55
-13.904
-1.125
5.194
B
C3'
BRU
18
HETATM
B
C3'
BRU
1
8
1.00
1
C
15.92
-12.424
-1.379
4.917
B
C4'
BRU
18
HETATM
B
C4'
BRU
1
8
1.00
1
C
12.38
-14.679
-1.914
4.288
B
O3'
BRU
18
HETATM
B
O3'
BRU
1
8
1.00
1
O
15.77
-12.029
-2.439
5.815
B
O4'
BRU
18
HETATM
B
O4'
BRU
1
8
1.00
1
O
16.20
-11.514
-0.182
5.075
B
C5'
BRU
18
HETATM
B
C5'
BRU
1
8
1.00
1
C
17.24
-11.777
0.485
6.307
B
O5'
BRU
18
HETATM
B
O5'
BRU
1
8
1.00
1
O
19.71
-11.269
1.976
6.547
B
P
BRU
18
HETATM
B
P
BRU
1
8
1.00
1
P
17.98
-10.793
2.535
5.255
B
OP1
BRU
18
HETATM
B
OP1
BRU
1
8
1.00
1
O
14.96
-12.313
2.695
7.321
B
OP2
BRU
18
HETATM
B
OP2
BRU
1
8
1.00
1
O
6.40
-15.254
-1.246
2.938
B
P
DG
19
ATOM
B
P
DG
1
9
1.00
1
P
9.60
-14.235
-0.326
2.388
B
OP1
DG
19
ATOM
B
OP1
DG
1
9
1.00
1
O
11.00
-16.610
-0.734
3.246
B
OP2
DG
19
ATOM
B
OP2
DG
1
9
1.00
1
O
11.43
-15.372
-2.472
1.935
B
O5'
DG
19
ATOM
B
O5'
DG
1
9
1.00
1
O
10.56
-14.206
-3.070
1.367
B
C5'
DG
19
ATOM
B
C5'
DG
1
9
1.00
1
C
8.86
-14.241
-4.569
1.559
B
C4'
DG
19
ATOM
B
C4'
DG
1
9
1.00
1
C
11.16
-14.176
-4.856
2.969
B
O4'
DG
19
ATOM
B
O4'
DG
1
9
1.00
1
O
8.45
-15.512
-5.262
1.076
B
C3'
DG
19
ATOM
B
C3'
DG
1
9
1.00
1
C
6.09
-15.213
-6.613
0.692
B
O3'
DG
19
ATOM
B
O3'
DG
1
9
1.00
1
O
8.61
-16.379
-5.268
2.319
B
C2'
DG
19
ATOM
B
C2'
DG
1
9
1.00
1
C
7.93
-15.343
-5.556
3.374
B
C1'
DG
19
ATOM
B
C1'
DG
1
9
1.00
1
C
9.24
-15.651
-5.131
4.731
B
N9
DG
19
ATOM
B
N9
DG
1
9
1.00
1
N
6.55
-16.393
-4.048
5.141
B
C8
DG
19
ATOM
B
C8
DG
1
9
1.00
1
C
6.69
-16.386
-3.892
6.435
B
N7
DG
19
ATOM
B
N7
DG
1
9
1.00
1
N
6.57
-15.604
-4.943
6.901
B
C5
DG
19
ATOM
B
C5
DG
1
9
1.00
1
C
3.65
-15.202
-5.282
8.214
B
C6
DG
19
ATOM
B
C6
DG
1
9
1.00
1
C
4.28
-15.420
-4.685
9.256
B
O6
DG
19
ATOM
B
O6
DG
1
9
1.00
1
O
6.00
-14.445
-6.443
8.235
B
N1
DG
19
ATOM
B
N1
DG
1
9
1.00
1
N
6.29
-14.096
-7.177
7.134
B
C2
DG
19
ATOM
B
C2
DG
1
9
1.00
1
C
7.28
-13.369
-8.286
7.361
B
N2
DG
19
ATOM
B
N2
DG
1
9
1.00
1
N
7.27
-14.433
-6.855
5.904
B
N3
DG
19
ATOM
B
N3
DG
1
9
1.00
1
N
7.46
-15.183
-5.734
5.863
B
C4
DG
19
ATOM
B
C4
DG
1
9
1.00
1
C
6.45
-16.141
-7.350
-0.390
B
P
DG
20
ATOM
B
P
DG
1
10
1.00
1
P
6.28
-15.449
-7.272
-1.705
B
OP1
DG
20
ATOM
B
OP1
DG
1
10
1.00
1
O
6.74
-17.492
-6.755
-0.229
B
OP2
DG
20
ATOM
B
OP2
DG
1
10
1.00
1
O
7.00
-16.175
-8.879
0.062
B
O5'
DG
20
ATOM
B
O5'
DG
1
10
1.00
1
O
7.22
-15.002
-9.690
0.008
B
C5'
DG
20
ATOM
B
C5'
DG
1
10
1.00
1
C
10.19
-15.099
-10.815
1.011
B
C4'
DG
20
ATOM
B
C4'
DG
1
10
1.00
1
C
9.14
-15.320
-10.219
2.314
B
O4'
DG
20
ATOM
B
O4'
DG
1
10
1.00
1
O
9.49
-16.277
-11.765
0.791
B
C3'
DG
20
ATOM
B
C3'
DG
1
10
1.00
1
C
6.30
-16.019
-13.058
1.349
B
O3'
DG
20
ATOM
B
O3'
DG
1
10
1.00
1
O
8.69
-17.376
-11.129
1.623
B
C2'
DG
20
ATOM
B
C2'
DG
1
10
1.00
1
C
9.09
-16.602
-10.581
2.812
B
C1'
DG
20
ATOM
B
C1'
DG
1
10
1.00
1
C
11.29
-17.197
-9.395
3.420
B
N9
DG
20
ATOM
B
N9
DG
1
10
1.00
1
N
9.98
-17.834
-8.371
2.767
B
C8
DG
20
ATOM
B
C8
DG
1
10
1.00
1
C
13.11
-18.278
-7.448
3.572
B
N7
DG
20
ATOM
B
N7
DG
1
10
1.00
1
N
12.97
-17.910
-7.885
4.837
B
C5
DG
20
ATOM
B
C5
DG
1
10
1.00
1
C
12.98
-18.118
-7.292
6.122
B
C6
DG
20
ATOM
B
C6
DG
1
10
1.00
1
C
11.29
-18.684
-6.222
6.402
B
O6
DG
20
ATOM
B
O6
DG
1
10
1.00
1
O
11.42
-17.579
-8.076
7.137
B
N1
DG
20
ATOM
B
N1
DG
1
10
1.00
1
N
12.08
-16.923
-9.265
6.948
B
C2
DG
20
ATOM
B
C2
DG
1
10
1.00
1
C
12.50
-16.476
-9.870
8.049
B
N2
DG
20
ATOM
B
N2
DG
1
10
1.00
1
N
13.97
-16.719
-9.822
5.765
B
N3
DG
20
ATOM
B
N3
DG
1
10
1.00
1
N
12.32
-17.236
-9.084
4.761
B
C4
DG
20
ATOM
B
C4
DG
1
10
1.00
1
C
6.08
0.010
-4.498
0.004
A
NA
NA
37
HETATM
C
NA
NA
2
0.50
1
NA
14.61
-7.913
0.016
-15.694
A
CA
CA
67
HETATM
D
CA
CA
3
1.00
1
CA
1.00
-9.813
-5.892
3.381
A
O
HOH
21
HETATM
E
O
HOH
4
1.00
1
O
9.24
-17.895
-11.408
11.587
A
O
HOH
23
HETATM
E
O
HOH
4
1.00
1
O
20.80
-0.979
6.803
-11.791
A
O
HOH
24
HETATM
E
O
HOH
4
1.00
1
O
8.16
-18.661
-12.871
13.876
A
O
HOH
25
HETATM
E
O
HOH
4
1.00
1
O
1.00
-5.586
-3.031
-3.579
A
O
HOH
26
HETATM
E
O
HOH
4
1.00
1
O
10.45
-6.955
1.999
-15.020
A
O
HOH
27
HETATM
E
O
HOH
4
1.00
1
O
24.88
-2.884
3.063
-11.901
A
O
HOH
29
HETATM
E
O
HOH
4
1.00
1
O
31.93
-11.423
-9.047
18.578
A
O
HOH
30
HETATM
E
O
HOH
4
1.00
1
O
14.51
-1.067
-8.585
11.030
A
O
HOH
32
HETATM
E
O
HOH
4
1.00
1
O
16.17
-4.864
-14.307
2.394
A
O
HOH
33
HETATM
E
O
HOH
4
1.00
1
O
21.15
-4.117
-9.928
16.109
A
O
HOH
34
HETATM
E
O
HOH
4
1.00
1
O
1.88
-11.565
-14.300
16.853
A
O
HOH
36
HETATM
E
O
HOH
4
1.00
1
O
13.40
-4.815
-12.301
-2.390
A
O
HOH
38
HETATM
E
O
HOH
4
1.00
1
O
5.43
-8.302
-6.326
1.436
A
O
HOH
39
HETATM
E
O
HOH
4
1.00
1
O
1.00
-8.040
7.215
-7.564
A
O
HOH
40
HETATM
E
O
HOH
4
1.00
1
O
9.96
-5.030
-12.465
13.297
A
O
HOH
42
HETATM
E
O
HOH
4
1.00
1
O
8.73
-14.635
-8.482
19.080
A
O
HOH
43
HETATM
E
O
HOH
4
1.00
1
O
5.65
-5.689
3.606
-18.598
A
O
HOH
44
HETATM
E
O
HOH
4
1.00
1
O
30.83
-5.613
-0.042
3.281
A
O
HOH
46
HETATM
E
O
HOH
4
1.00
1
O
7.70
-9.052
-17.296
5.157
A
O
HOH
50
HETATM
E
O
HOH
4
1.00
1
O
1.00
-7.179
-12.862
-0.852
A
O
HOH
52
HETATM
E
O
HOH
4
1.00
1
O
16.22
-1.540
-10.662
14.924
A
O
HOH
53
HETATM
E
O
HOH
4
1.00
1
O
19.96
-10.674
7.909
-8.987
A
O
HOH
54
HETATM
E
O
HOH
4
1.00
1
O
15.69
-7.422
-1.197
1.468
A
O
HOH
55
HETATM
E
O
HOH
4
1.00
1
O
23.68
-9.946
-15.023
6.048
A
O
HOH
57
HETATM
E
O
HOH
4
1.00
1
O
13.56
-10.315
-10.795
2.625
A
O
HOH
61
HETATM
E
O
HOH
4
1.00
1
O
21.89
-8.852
-3.238
4.515
A
O
HOH
62
HETATM
E
O
HOH
4
1.00
1
O
16.50
-7.384
3.964
-5.524
A
O
HOH
64
HETATM
E
O
HOH
4
1.00
1
O
32.71
-4.794
7.752
-5.709
A
O
HOH
65
HETATM
E
O
HOH
4
1.00
1
O
1.47
-3.114
-11.070
4.258
A
O
HOH
66
HETATM
E
O
HOH
4
1.00
1
O
1.00
0.000
3.995
0.000
A
O
HOH
68
HETATM
E
O
HOH
4
0.5
1
O
21.57
-11.779
-7.497
1.248
A
O
HOH
70
HETATM
E
O
HOH
4
1.00
1
O
21.69
-7.951
-11.100
15.462
A
O
HOH
72
HETATM
E
O
HOH
4
1.00
1
O
13.71
-8.694
2.076
0.359
A
O
HOH
73
HETATM
E
O
HOH
4
1.00
1
O
16.75
-2.612
7.951
-4.008
A
O
HOH
76
HETATM
E
O
HOH
4
1.00
1
O
9.15
-4.414
4.348
-3.608
A
O
HOH
77
HETATM
E
O
HOH
4
1.00
1
O
9.89
-11.803
10.141
-9.076
A
O
HOH
79
HETATM
E
O
HOH
4
1.00
1
O
14.17
-9.625
0.685
-14.349
A
O
HOH
80
HETATM
E
O
HOH
4
1.00
1
O
6.89
-9.533
0.540
-17.153
A
O
HOH
81
HETATM
E
O
HOH
4
1.00
1
O
17.45
-5.076
0.030
-16.496
A
O
HOH
82
HETATM
E
O
HOH
4
1.00
1
O
25.44
-18.381
-12.803
16.466
A
O
HOH
85
HETATM
E
O
HOH
4
1.00
1
O
24.14
-5.494
-13.470
18.224
A
O
HOH
86
HETATM
E
O
HOH
4
0.5
1
O
24.95
-12.521
-16.195
6.701
A
O
HOH
87
HETATM
E
O
HOH
4
1.00
1
O
29.23
-12.552
-1.935
14.990
A
O
HOH
88
HETATM
E
O
HOH
4
1.00
1
O
15.02
-6.424
-0.371
-1.429
A
O
HOH
90
HETATM
E
O
HOH
4
1.00
1
O
19.57
-10.084
-17.296
7.434
A
O
HOH
96
HETATM
E
O
HOH
4
1.00
1
O
23.57
-10.062
-11.460
17.234
A
O
HOH
100
HETATM
E
O
HOH
4
1.00
1
O
19.64
-1.493
-6.382
-3.198
A
O
HOH
101
HETATM
E
O
HOH
4
1.00
1
O
21.33
1.842
3.095
-5.262
A
O
HOH
103
HETATM
E
O
HOH
4
1.00
1
O
16.85
-16.068
-13.050
13.299
A
O
HOH
107
HETATM
E
O
HOH
4
1.00
1
O
13.35
-14.271
-12.319
3.223
B
O
HOH
22
HETATM
F
O
HOH
4
1.00
1
O
10.62
-13.204
1.746
9.390
B
O
HOH
28
HETATM
F
O
HOH
4
1.00
1
O
15.26
8.959
-9.273
6.957
B
O
HOH
31
HETATM
F
O
HOH
4
1.00
1
O
25.91
-5.898
7.450
11.453
B
O
HOH
35
HETATM
F
O
HOH
4
1.00
1
O
25.42
14.272
-9.899
16.685
B
O
HOH
41
HETATM
F
O
HOH
4
1.00
1
O
1.00
-1.389
4.785
17.300
B
O
HOH
45
HETATM
F
O
HOH
4
1.00
1
O
2.82
9.075
-4.775
11.014
B
O
HOH
47
HETATM
F
O
HOH
4
1.00
1
O
1.00
-12.236
-5.291
4.230
B
O
HOH
48
HETATM
F
O
HOH
4
1.00
1
O
6.15
-14.344
1.635
6.484
B
O
HOH
49
HETATM
F
O
HOH
4
1.00
1
O
1.00
4.058
-0.555
13.043
B
O
HOH
51
HETATM
F
O
HOH
4
1.00
1
O
7.68
-18.008
-1.129
7.572
B
O
HOH
56
HETATM
F
O
HOH
4
1.00
1
O
5.03
-0.993
2.321
18.941
B
O
HOH
58
HETATM
F
O
HOH
4
1.00
1
O
6.84
5.848
-6.645
5.743
B
O
HOH
59
HETATM
F
O
HOH
4
1.00
1
O
31.85
-14.943
0.057
9.117
B
O
HOH
60
HETATM
F
O
HOH
4
1.00
1
O
21.48
13.592
-8.440
11.379
B
O
HOH
63
HETATM
F
O
HOH
4
1.00
1
O
8.08
7.217
-2.237
17.736
B
O
HOH
69
HETATM
F
O
HOH
4
1.00
1
O
1.00
-3.504
2.888
18.602
B
O
HOH
71
HETATM
F
O
HOH
4
1.00
1
O
22.51
-4.545
2.935
7.519
B
O
HOH
74
HETATM
F
O
HOH
4
1.00
1
O
23.44
6.332
-1.475
13.610
B
O
HOH
75
HETATM
F
O
HOH
4
1.00
1
O
29.46
-11.957
3.807
12.895
B
O
HOH
78
HETATM
F
O
HOH
4
1.00
1
O
8.11
1.267
-9.808
7.896
B
O
HOH
83
HETATM
F
O
HOH
4
1.00
1
O
25.94
-6.028
5.945
9.343
B
O
HOH
84
HETATM
F
O
HOH
4
1.00
1
O
5.51
-11.313
0.631
14.542
B
O
HOH
89
HETATM
F
O
HOH
4
1.00
1
O
18.29
1.296
2.637
18.489
B
O
HOH
91
HETATM
F
O
HOH
4
1.00
1
O
25.71
3.719
-9.533
8.711
B
O
HOH
92
HETATM
F
O
HOH
4
1.00
1
O
25.17
8.700
-3.091
15.095
B
O
HOH
93
HETATM
F
O
HOH
4
1.00
1
O
24.55
15.800
-10.365
12.029
B
O
HOH
94
HETATM
F
O
HOH
4
1.00
1
O
14.76
-17.747
1.814
8.803
B
O
HOH
95
HETATM
F
O
HOH
4
1.00
1
O
21.41
-7.098
-1.293
16.064
B
O
HOH
97
HETATM
F
O
HOH
4
1.00
1
O
18.91
3.241
-8.055
10.699
B
O
HOH
98
HETATM
F
O
HOH
4
1.00
1
O
25.57
8.975
1.891
3.311
B
O
HOH
99
HETATM
F
O
HOH
4
1.00
1
O
16.85
-2.804
4.291
20.499
B
O
HOH
102
HETATM
F
O
HOH
4
1.00
1
O
17.68
-15.329
3.584
5.713
B
O
HOH
104
HETATM
F
O
HOH
4
1.00
1
O
21.16
-8.650
-4.941
14.951
B
O
HOH
105
HETATM
F
O
HOH
4
1.00
1
O
18.17
12.355
-8.099
16.089
B
O
HOH
106
HETATM
F
O
HOH
4
1.00
1
O
14.03
15.515
-13.679
14.201
B
O
HOH
108
HETATM
F
O
HOH
4
1.00
1
O
17.25
10.945
-5.357
16.313
B
O
HOH
109
HETATM
F
O
HOH
4
1.00
1
O
0.015423
0.000000
0.004649
0.000000
0.044293
0.000000
0.000000
0.000000
0.027436
0.00000
0.00000
0.00000
Hays, F.A.
Vargason, J.M.
Ho, P.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
106.78
90.00
64.840
22.580
38.070
C9 H12 Br N2 O8 P
387.078
n
5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
DNA linking
Ca 2
40.078
CALCIUM ION
non-polymer
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
Na 1
22.990
SODIUM ION
non-polymer
N
1
N
N
N
2
N
C
N
3
N
N
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
O
N
8
N
O
N
9
N
BR
N
10
R
C
N
11
N
C
N
12
S
C
N
13
R
C
N
14
N
O
N
15
N
O
N
16
N
C
N
17
N
O
N
18
N
P
N
19
N
O
N
20
N
O
N
21
N
O
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
CA
N
35
N
O
N
36
N
P
N
37
N
O
N
38
N
O
N
39
N
O
N
40
N
C
N
41
R
C
N
42
N
O
N
43
S
C
N
44
N
O
N
45
N
C
N
46
R
C
Y
47
N
N
Y
48
N
C
Y
49
N
N
Y
50
N
C
Y
51
N
C
N
52
N
N
Y
53
N
N
Y
54
N
C
Y
55
N
N
Y
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
N
83
N
N
N
84
N
C
N
85
N
O
N
86
N
N
N
87
N
C
N
88
N
N
N
89
N
C
N
90
N
C
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
O
N
106
N
P
N
107
N
O
N
108
N
O
N
109
N
O
N
110
N
C
N
111
R
C
N
112
N
O
N
113
S
C
N
114
N
O
N
115
N
C
N
116
R
C
Y
117
N
N
Y
118
N
C
Y
119
N
N
Y
120
N
C
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
N
N
126
N
N
Y
127
N
C
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
O
N
143
N
P
N
144
N
O
N
145
N
O
N
146
N
O
N
147
N
C
N
148
R
C
N
149
N
O
N
150
S
C
N
151
N
O
N
152
N
C
N
153
R
C
N
154
N
N
N
155
N
C
N
156
N
O
N
157
N
N
N
158
N
C
N
159
N
O
N
160
N
C
N
161
N
C
N
162
N
C
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
O
N
179
N
H
N
180
N
H
N
181
N
NA
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
doub
N
10
N
doub
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
doub
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
doub
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
Y
58
N
sing
Y
59
N
sing
Y
60
N
doub
N
61
N
sing
Y
62
N
sing
Y
63
N
sing
Y
64
N
doub
N
65
N
sing
Y
66
N
doub
N
67
N
sing
N
68
N
sing
Y
69
N
sing
Y
70
N
doub
N
71
N
sing
Y
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
doub
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
Y
131
N
sing
Y
132
N
sing
Y
133
N
doub
N
134
N
sing
Y
135
N
sing
N
136
N
sing
Y
137
N
doub
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
42
9586
9597
10.1021/bi0346603
12911300
Effect of Sequence on the Conformation of DNA Holliday Junctions
2003
10.2210/pdb1p54/pdb
pdb_00001p54
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
103.0
1
IMAGE PLATE
2002-12-19
RIGAKU RAXIS IV
NI FILTER
SINGLE WAVELENGTH
M
x-ray
1
1.542
1.0
1.542
ROTATING ANODE
RIGAKU RU300
3109.874
5'-D(*CP*CP*AP*GP*TP*AP*CP*(BRU)P*GP*G)-3'
2
syn
polymer
22.990
SODIUM ION
1
syn
non-polymer
40.078
CALCIUM ION
1
syn
non-polymer
18.015
water
87
nat
water
no
yes
(DC)(DC)(DA)(DG)(DT)(DA)(DC)(BRU)(DG)(DG)
CCAGTACUGG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
1
1.93
35.87
7.50
0.6mM DNA, 5mM Tris-HCL, 120mM calcium acetate, 16% 2-methyl-2,4-pentane diol, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K, pH 7.50
298
Tris-HCL
1
calcium acetate
1
2-methyl-2,4-pentane diol
1
H2O
1
calcium acetate
2
Tris-HCL
2
2-methyl-2,4-pentane diol
2
H2O
2
-0.110
1
19
A
1
B
20
0.485
A_DC1:DG20_B
1
-13.775
0.041
0.058
-0.058
-1.830
1
19
A
2
B
19
-0.482
A_DC2:DG19_B
2
-16.662
0.469
0.543
-0.121
-3.669
1
20
A
3
B
18
1.743
A_DA3:BRU18_B
3
-6.015
-0.085
0.417
-0.067
4.459
1
19
A
4
B
17
-6.000
A_DG4:DC17_B
4
-16.673
-0.843
0.221
-0.485
4.364
1
20
A
5
B
16
4.769
A_DT5:DA16_B
5
-0.040
0.106
0.178
-0.055
14.311
1
20
A
6
B
15
3.463
A_DA6:DT15_B
6
-16.557
0.217
0.205
0.159
3.743
45.533
A
A
1
2
3.292
B
B
20
19
3.646
2.540
0.200
2.022
AA_DC1DC2:DG19DG20_BB
1
6.057
-7.850
45.082
2.359
0.346
2.226
45.393
A
A
2
3
-19.845
B
B
19
18
3.276
-15.048
0.263
2.820
AA_DC2DA3:BRU18DG19_BB
2
2.188
-2.885
42.898
4.811
-0.173
3.088
34.629
A
A
3
4
10.690
B
B
18
17
3.132
6.329
0.383
0.066
AA_DA3DG4:DC17BRU18_BB
3
-0.576
0.973
34.058
-0.823
-0.728
3.130
30.588
A
A
4
5
16.024
B
B
17
16
3.204
8.337
0.806
-0.076
AA_DG4DT5:DA16DC17_BB
4
3.047
-5.856
29.301
-1.779
-0.931
3.194
38.435
A
A
5
6
3.777
B
B
16
15
3.175
2.485
-0.797
0.824
AA_DT5DA6:DT15DA16_BB
5
1.202
-1.828
38.339
0.951
1.356
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Atomic model
Data collection
Database references
Derived calculations
Refinement description
1
0
2003-09-02
1
1
2008-04-29
1
2
2011-07-13
1
3
2011-11-16
1
4
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Effect of Sequence on the Conformational Geometry of DNA Holliday Junctions
Effect of Sequence on the Conformational Geometry of DNA Holliday Junctions
RCSB
Y
RCSB
2003-04-25
REL
REL
NA
SODIUM ION
CA
CALCIUM ION
HOH
water
DNA was synthesized on an Applied Biosystems DNA synthesizer using phosphoramidite chemistry, with the trityl-protecting group left intact at the 5-terminal nucleotide, FOR SUBSEQUENT HPLC PURIFICATION, THEN DEPROTECTED BY TREATMENT WITH 3% ACETIC ACID FOR FIFTEEN MINUTES, NEUTRALIZED WITH AMMONIUM HYDROXIDE, AND DESALTED ON A SIGMA G-25 SEPHADEX COLUMN.
sample
1L6B
1L6B USED FOR INITIAL SOLUTION VIA MOLECULAR REPLACEMENT
PDB
experimental model
NA
37
2
NA
NA
37
A
CA
67
3
CA
CA
67
A
HOH
21
4
HOH
HOH
21
A
HOH
23
4
HOH
HOH
23
A
HOH
24
4
HOH
HOH
24
A
HOH
25
4
HOH
HOH
25
A
HOH
26
4
HOH
HOH
26
A
HOH
27
4
HOH
HOH
27
A
HOH
29
4
HOH
HOH
29
A
HOH
30
4
HOH
HOH
30
A
HOH
32
4
HOH
HOH
32
A
HOH
33
4
HOH
HOH
33
A
HOH
34
4
HOH
HOH
34
A
HOH
36
4
HOH
HOH
36
A
HOH
38
4
HOH
HOH
38
A
HOH
39
4
HOH
HOH
39
A
HOH
40
4
HOH
HOH
40
A
HOH
42
4
HOH
HOH
42
A
HOH
43
4
HOH
HOH
43
A
HOH
44
4
HOH
HOH
44
A
HOH
46
4
HOH
HOH
46
A
HOH
50
4
HOH
HOH
50
A
HOH
52
4
HOH
HOH
52
A
HOH
53
4
HOH
HOH
53
A
HOH
54
4
HOH
HOH
54
A
HOH
55
4
HOH
HOH
55
A
HOH
57
4
HOH
HOH
57
A
HOH
61
4
HOH
HOH
61
A
HOH
62
4
HOH
HOH
62
A
HOH
64
4
HOH
HOH
64
A
HOH
65
4
HOH
HOH
65
A
HOH
66
4
HOH
HOH
66
A
HOH
68
4
HOH
HOH
68
A
HOH
70
4
HOH
HOH
70
A
HOH
72
4
HOH
HOH
72
A
HOH
73
4
HOH
HOH
73
A
HOH
76
4
HOH
HOH
76
A
HOH
77
4
HOH
HOH
77
A
HOH
79
4
HOH
HOH
79
A
HOH
80
4
HOH
HOH
80
A
HOH
81
4
HOH
HOH
81
A
HOH
82
4
HOH
HOH
82
A
HOH
85
4
HOH
HOH
85
A
HOH
86
4
HOH
HOH
86
A
HOH
87
4
HOH
HOH
87
A
HOH
88
4
HOH
HOH
88
A
HOH
90
4
HOH
HOH
90
A
HOH
96
4
HOH
HOH
96
A
HOH
100
4
HOH
HOH
100
A
HOH
101
4
HOH
HOH
101
A
HOH
103
4
HOH
HOH
103
A
HOH
107
4
HOH
HOH
107
A
HOH
22
4
HOH
HOH
22
B
HOH
28
4
HOH
HOH
28
B
HOH
31
4
HOH
HOH
31
B
HOH
35
4
HOH
HOH
35
B
HOH
41
4
HOH
HOH
41
B
HOH
45
4
HOH
HOH
45
B
HOH
47
4
HOH
HOH
47
B
HOH
48
4
HOH
HOH
48
B
HOH
49
4
HOH
HOH
49
B
HOH
51
4
HOH
HOH
51
B
HOH
56
4
HOH
HOH
56
B
HOH
58
4
HOH
HOH
58
B
HOH
59
4
HOH
HOH
59
B
HOH
60
4
HOH
HOH
60
B
HOH
63
4
HOH
HOH
63
B
HOH
69
4
HOH
HOH
69
B
HOH
71
4
HOH
HOH
71
B
HOH
74
4
HOH
HOH
74
B
HOH
75
4
HOH
HOH
75
B
HOH
78
4
HOH
HOH
78
B
HOH
83
4
HOH
HOH
83
B
HOH
84
4
HOH
HOH
84
B
HOH
89
4
HOH
HOH
89
B
HOH
91
4
HOH
HOH
91
B
HOH
92
4
HOH
HOH
92
B
HOH
93
4
HOH
HOH
93
B
HOH
94
4
HOH
HOH
94
B
HOH
95
4
HOH
HOH
95
B
HOH
97
4
HOH
HOH
97
B
HOH
98
4
HOH
HOH
98
B
HOH
99
4
HOH
HOH
99
B
HOH
102
4
HOH
HOH
102
B
HOH
104
4
HOH
HOH
104
B
HOH
105
4
HOH
HOH
105
B
HOH
106
4
HOH
HOH
106
B
HOH
108
4
HOH
HOH
108
B
HOH
109
4
HOH
HOH
109
B
C
1
n
1
DC
1
A
C
2
n
2
DC
2
A
A
3
n
3
DA
3
A
G
4
n
4
DG
4
A
T
5
n
5
DT
5
A
A
6
n
6
DA
6
A
C
7
n
7
DC
7
A
+U
8
n
8
BRU
8
A
G
9
n
9
DG
9
A
G
10
n
10
DG
10
A
C
11
n
1
DC
11
B
C
12
n
2
DC
12
B
A
13
n
3
DA
13
B
G
14
n
4
DG
14
B
T
15
n
5
DT
15
B
A
16
n
6
DA
16
B
C
17
n
7
DC
17
B
+U
18
n
8
BRU
18
B
G
19
n
9
DG
19
B
G
20
n
10
DG
20
B
author_defined_assembly
4
tetrameric
A
HOH
27
E
O
HOH
1_555
A
CA
67
D
CA
CA
1_555
A
HOH
80
E
O
HOH
1_555
83.5
A
HOH
27
E
O
HOH
1_555
A
CA
67
D
CA
CA
1_555
A
HOH
81
E
O
HOH
1_555
106.8
A
HOH
80
E
O
HOH
1_555
A
CA
67
D
CA
CA
1_555
A
HOH
81
E
O
HOH
1_555
76.9
A
HOH
27
E
O
HOH
1_555
A
CA
67
D
CA
CA
1_555
A
HOH
82
E
O
HOH
1_555
71.0
A
HOH
80
E
O
HOH
1_555
A
CA
67
D
CA
CA
1_555
A
HOH
82
E
O
HOH
1_555
152.0
A
HOH
81
E
O
HOH
1_555
A
CA
67
D
CA
CA
1_555
A
HOH
82
E
O
HOH
1_555
121.1
A
HOH
27
E
O
HOH
1_555
A
CA
67
D
CA
CA
1_555
B
HOH
69
F
O
HOH
2_555
136.1
A
HOH
80
E
O
HOH
1_555
A
CA
67
D
CA
CA
1_555
B
HOH
69
F
O
HOH
2_555
140.0
A
HOH
81
E
O
HOH
1_555
A
CA
67
D
CA
CA
1_555
B
HOH
69
F
O
HOH
2_555
84.5
A
HOH
82
E
O
HOH
1_555
A
CA
67
D
CA
CA
1_555
B
HOH
69
F
O
HOH
2_555
67.1
A
HOH
27
E
O
HOH
1_555
A
CA
67
D
CA
CA
1_555
B
HOH
75
F
O
HOH
2_555
90.3
A
HOH
80
E
O
HOH
1_555
A
CA
67
D
CA
CA
1_555
B
HOH
75
F
O
HOH
2_555
97.6
A
HOH
81
E
O
HOH
1_555
A
CA
67
D
CA
CA
1_555
B
HOH
75
F
O
HOH
2_555
161.0
A
HOH
82
E
O
HOH
1_555
A
CA
67
D
CA
CA
1_555
B
HOH
75
F
O
HOH
2_555
71.7
B
HOH
69
F
O
HOH
2_555
A
CA
67
D
CA
CA
1_555
B
HOH
75
F
O
HOH
2_555
88.8
A
HOH
27
E
O
HOH
1_555
A
CA
67
D
CA
CA
1_555
B
HOH
93
F
O
HOH
2_555
150.1
A
HOH
80
E
O
HOH
1_555
A
CA
67
D
CA
CA
1_555
B
HOH
93
F
O
HOH
2_555
89.4
A
HOH
81
E
O
HOH
1_555
A
CA
67
D
CA
CA
1_555
B
HOH
93
F
O
HOH
2_555
99.7
A
HOH
82
E
O
HOH
1_555
A
CA
67
D
CA
CA
1_555
B
HOH
93
F
O
HOH
2_555
106.7
B
HOH
69
F
O
HOH
2_555
A
CA
67
D
CA
CA
1_555
B
HOH
93
F
O
HOH
2_555
59.1
B
HOH
75
F
O
HOH
2_555
A
CA
67
D
CA
CA
1_555
B
HOH
93
F
O
HOH
2_555
61.8
A
BRU
8
A
BRU
8
DU
B
BRU
18
B
BRU
8
DU
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_555
-x,y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
1
A
NA
37
C
NA
1
A
HOH
68
E
HOH
1
A
HOH
86
E
HOH
1
B
DG
19
0.054
SIDE CHAIN
9.50
0.242
0.012
0.215
0.215
1.90
19.18
388
4011
3745
10.4
86.7
RANDOM
1
RESTRAINED
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
1L6B USED FOR INITIAL SOLUTION VIA MOLECULAR REPLACEMENT
0.26
0.22
5.00
0.18
0.14
1.90
19.18
87
493
2
404
0
0.005
0.9
18.30
1.37
0.248
0.041
0.259
2.02
37
385
6
8.8
60.10
4.3
1.800
19.180
1P54
4177
0.000
0.041
1
4.05
82.0
0.189
1.80
1.86
34.9
data reduction
DENZO
data scaling
SCALEPACK
phasing
EPMR
refinement
CNS
1.0
Effect of Sequence on the Conformational Geometry of DNA Holliday Junctions
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
This entry contains the crystallographic asymmetric unit which consists of two chains A and B. The full four stranded Holliday junction structure can be generated by the following:
matrix =
(-1.00000 0.00001 0.00000)
(0.00001 1.00000 -0.00002)
(0.00000 -0.00002 -1.00000)
translation =
(0.00022 0.00018 -0.00034)
covale
1.613
both
A
DC
7
A
O3'
DC
7
1_555
A
BRU
8
A
P
BRU
8
1_555
covale
1.609
both
A
BRU
8
A
O3'
BRU
8
1_555
A
DG
9
A
P
DG
9
1_555
covale
1.609
both
B
DC
17
B
O3'
DC
7
1_555
B
BRU
18
B
P
BRU
8
1_555
covale
1.612
both
B
BRU
18
B
O3'
BRU
8
1_555
B
DG
19
B
P
DG
9
1_555
metalc
2.777
A
DA
6
A
OP2
DA
6
1_555
A
NA
37
C
NA
NA
1_555
metalc
2.303
A
HOH
27
E
O
HOH
1_555
A
CA
67
D
CA
CA
1_555
metalc
2.278
A
CA
67
D
CA
CA
1_555
A
HOH
80
E
O
HOH
1_555
metalc
2.242
A
CA
67
D
CA
CA
1_555
A
HOH
81
E
O
HOH
1_555
metalc
2.948
A
CA
67
D
CA
CA
1_555
A
HOH
82
E
O
HOH
1_555
metalc
3.119
A
CA
67
D
CA
CA
1_555
B
HOH
69
F
O
HOH
2_555
metalc
3.011
A
CA
67
D
CA
CA
1_555
B
HOH
75
F
O
HOH
2_555
metalc
3.261
A
CA
67
D
CA
CA
1_555
B
HOH
93
F
O
HOH
2_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
20
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
20
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
20
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
B
DG
19
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
B
DG
19
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
B
DG
19
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N1
DA
3
1_555
B
BRU
18
B
N3
BRU
8
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N6
DA
3
1_555
B
BRU
18
B
O4
BRU
8
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
17
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
17
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
17
B
N4
DC
7
1_555
hydrog
WATSON-CRICK
A
DT
5
A
N3
DT
5
1_555
B
DA
16
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
5
A
O4
DT
5
1_555
B
DA
16
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
B
DT
15
B
N3
DT
5
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
B
DT
15
B
O4
DT
5
1_555
DNA
DNA Holliday Junction, Four-Way Junction, stacked-X junction, brominated uracil, DNA
1P54
PDB
1
1P54
1
10
1P54
1
10
1P54
A
1
1
10
11
20
1P54
11
20
1P54
B
1
1
10
BINDING SITE FOR RESIDUE NA A 37
A
NA
37
Software
2
BINDING SITE FOR RESIDUE CA A 67
A
CA
67
Software
5
A
DA
6
A
DA
6
2
1_555
A
DA
6
A
DA
6
2
2_555
A
HOH
27
E
HOH
5
1_555
A
HOH
80
E
HOH
5
1_555
A
HOH
81
E
HOH
5
1_555
A
HOH
82
E
HOH
5
1_555
B
HOH
75
F
HOH
5
2_555
5
C 1 2 1