data_wwPDB_remediated_restraints_file_for_PDB_entry_1p9f # This wwPDB archive file contains, for PDB entry 1p9f: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389–396. save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_1p9f _Entry.Title "wwPDB remediated NMR restraints for PDB entry 1p9f" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 1p9f" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_1p9f _Assembly.ID 1 _Assembly.Name 1p9f _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "not present" _Assembly.Molecular_mass 1210.4047 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 "NEUROKININ B" 1 $NEUROKININ_B A . no . . . . . . rr_1p9f 1 stop_ save_ save_NEUROKININ_B _Entity.Sf_category entity _Entity.Sf_framecode NEUROKININ_B _Entity.Entry_ID rr_1p9f _Entity.ID 1 _Entity.Name NEUROKININ_B _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code DMHDFFVGLM _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 10 _Entity.Paramagnetic no _Entity.Thiol_state "not present" _Entity.Parent_entity_ID 1 _Entity.Formula_weight 1210.4047 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . ASP . rr_1p9f 1 2 . MET . rr_1p9f 1 3 . HIS . rr_1p9f 1 4 . ASP . rr_1p9f 1 5 . PHE . rr_1p9f 1 6 . PHE . rr_1p9f 1 7 . VAL . rr_1p9f 1 8 . GLY . rr_1p9f 1 9 . LEU . rr_1p9f 1 10 . MET . rr_1p9f 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . ASP 1 1 rr_1p9f 1 . MET 2 2 rr_1p9f 1 . HIS 3 3 rr_1p9f 1 . ASP 4 4 rr_1p9f 1 . PHE 5 5 rr_1p9f 1 . PHE 6 6 rr_1p9f 1 . VAL 7 7 rr_1p9f 1 . GLY 8 8 rr_1p9f 1 . LEU 9 9 rr_1p9f 1 . MET 10 10 rr_1p9f 1 stop_ save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_1p9f _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 20 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_1p9f _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 1p9f.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_1p9f 1 1 1p9f.mr . . DYANA/DIANA 2 "dihedral angle" "Not applicable" "Not applicable" 9 rr_1p9f 1 1 1p9f.mr . . "MR format" 3 "nomenclature mapping" "Not applicable" "Not applicable" 0 rr_1p9f 1 stop_ save_ save_DYANA/DIANA_dihedral_2 _Torsion_angle_constraint_list.Sf_category torsion_angle_constraints _Torsion_angle_constraint_list.Sf_framecode DYANA/DIANA_dihedral_2 _Torsion_angle_constraint_list.Entry_ID rr_1p9f _Torsion_angle_constraint_list.ID 1 _Torsion_angle_constraint_list.Details "Generated by Wattos" _Torsion_angle_constraint_list.Constraint_file_ID 1 _Torsion_angle_constraint_list.Block_ID 2 loop_ _Torsion_angle_constraint_software.Software_ID _Torsion_angle_constraint_software.Software_label _Torsion_angle_constraint_software.Method_ID _Torsion_angle_constraint_software.Method_label _Torsion_angle_constraint_software.Entry_ID _Torsion_angle_constraint_software.Torsion_angle_constraint_list_ID . . . . rr_1p9f 1 stop_ loop_ _Torsion_angle_constraint.ID _Torsion_angle_constraint.Torsion_angle_name _Torsion_angle_constraint.Assembly_atom_ID_1 _Torsion_angle_constraint.Entity_assembly_ID_1 _Torsion_angle_constraint.Entity_ID_1 _Torsion_angle_constraint.Comp_index_ID_1 _Torsion_angle_constraint.Seq_ID_1 _Torsion_angle_constraint.Comp_ID_1 _Torsion_angle_constraint.Atom_ID_1 _Torsion_angle_constraint.Atom_type_1 _Torsion_angle_constraint.Resonance_ID_1 _Torsion_angle_constraint.Assembly_atom_ID_2 _Torsion_angle_constraint.Entity_assembly_ID_2 _Torsion_angle_constraint.Entity_ID_2 _Torsion_angle_constraint.Comp_index_ID_2 _Torsion_angle_constraint.Seq_ID_2 _Torsion_angle_constraint.Comp_ID_2 _Torsion_angle_constraint.Atom_ID_2 _Torsion_angle_constraint.Atom_type_2 _Torsion_angle_constraint.Resonance_ID_2 _Torsion_angle_constraint.Assembly_atom_ID_3 _Torsion_angle_constraint.Entity_assembly_ID_3 _Torsion_angle_constraint.Entity_ID_3 _Torsion_angle_constraint.Comp_index_ID_3 _Torsion_angle_constraint.Seq_ID_3 _Torsion_angle_constraint.Comp_ID_3 _Torsion_angle_constraint.Atom_ID_3 _Torsion_angle_constraint.Atom_type_3 _Torsion_angle_constraint.Resonance_ID_3 _Torsion_angle_constraint.Assembly_atom_ID_4 _Torsion_angle_constraint.Entity_assembly_ID_4 _Torsion_angle_constraint.Entity_ID_4 _Torsion_angle_constraint.Comp_index_ID_4 _Torsion_angle_constraint.Seq_ID_4 _Torsion_angle_constraint.Comp_ID_4 _Torsion_angle_constraint.Atom_ID_4 _Torsion_angle_constraint.Atom_type_4 _Torsion_angle_constraint.Resonance_ID_4 _Torsion_angle_constraint.Angle_lower_bound_val _Torsion_angle_constraint.Angle_upper_bound_val _Torsion_angle_constraint.Source_experiment_ID _Torsion_angle_constraint.Auth_asym_ID_1 _Torsion_angle_constraint.Auth_entity_assembly_ID_1 _Torsion_angle_constraint.Auth_seq_ID_1 _Torsion_angle_constraint.Auth_comp_ID_1 _Torsion_angle_constraint.Auth_atom_ID_1 _Torsion_angle_constraint.Auth_asym_ID_2 _Torsion_angle_constraint.Auth_entity_assembly_ID_2 _Torsion_angle_constraint.Auth_seq_ID_2 _Torsion_angle_constraint.Auth_comp_ID_2 _Torsion_angle_constraint.Auth_atom_ID_2 _Torsion_angle_constraint.Auth_asym_ID_3 _Torsion_angle_constraint.Auth_entity_assembly_ID_3 _Torsion_angle_constraint.Auth_seq_ID_3 _Torsion_angle_constraint.Auth_comp_ID_3 _Torsion_angle_constraint.Auth_atom_ID_3 _Torsion_angle_constraint.Auth_asym_ID_4 _Torsion_angle_constraint.Auth_entity_assembly_ID_4 _Torsion_angle_constraint.Auth_seq_ID_4 _Torsion_angle_constraint.Auth_comp_ID_4 _Torsion_angle_constraint.Auth_atom_ID_4 _Torsion_angle_constraint.Entry_ID _Torsion_angle_constraint.Torsion_angle_constraint_list_ID 1 PHI . 1 1 1 1 ASP C C . . 1 1 2 2 MET N N . . 1 1 2 2 MET CA C . . 1 1 2 2 MET C C . -75.0 -55.0 . . . . . . . . . . . . . . . . . . . . . rr_1p9f 1 2 PHI . 1 1 2 2 MET C C . . 1 1 3 3 HIS N N . . 1 1 3 3 HIS CA C . . 1 1 3 3 HIS C C . -75.0 -55.0 . . . . . . . . . . . . . . . . . . . . . rr_1p9f 1 3 PHI . 1 1 3 3 HIS C C . . 1 1 4 4 ASP N N . . 1 1 4 4 ASP CA C . . 1 1 4 4 ASP C C . -65.0 -55.0 . . . . . . . . . . . . . . . . . . . . . rr_1p9f 1 4 PHI . 1 1 4 4 ASP C C . . 1 1 5 5 PHE N N . . 1 1 5 5 PHE CA C . . 1 1 5 5 PHE C C . -75.0 -55.0 . . . . . . . . . . . . . . . . . . . . . rr_1p9f 1 5 PHI . 1 1 5 5 PHE C C . . 1 1 6 6 PHE N N . . 1 1 6 6 PHE CA C . . 1 1 6 6 PHE C C . -75.0 -55.0 . . . . . . . . . . . . . . . . . . . . . rr_1p9f 1 6 PHI . 1 1 6 6 PHE C C . . 1 1 7 7 VAL N N . . 1 1 7 7 VAL CA C . . 1 1 7 7 VAL C C . -75.0 -55.0 . . . . . . . . . . . . . . . . . . . . . rr_1p9f 1 7 PHI . 1 1 7 7 VAL C C . . 1 1 8 8 GLY N N . . 1 1 8 8 GLY CA C . . 1 1 8 8 GLY C C . -75.0 -55.0 . . . . . . . . . . . . . . . . . . . . . rr_1p9f 1 8 PHI . 1 1 8 8 GLY C C . . 1 1 9 9 LEU N N . . 1 1 9 9 LEU CA C . . 1 1 9 9 LEU C C . -75.0 -55.0 . . . . . . . . . . . . . . . . . . . . . rr_1p9f 1 9 PHI . 1 1 9 9 LEU C C . . 1 1 10 10 MET N N . . 1 1 10 10 MET CA C . . 1 1 10 10 MET C C . -90.0 -70.0 . . . . . . . . . . . . . . . . . . . . . rr_1p9f 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_1p9f _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER NEUROPEPTIDE 12-MAY-03 1P9F *TITLE NEUROKININ B *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: ASPARTIC ACID; *COMPND 3 CHAIN: A; *COMPND 4 SYNONYM: NKB, NEUROMEDIN K, ZNEUROK1; *COMPND 5 ENGINEERED: YES *SOURCE MOL_ID: 1; *SOURCE 2 SYNTHETIC: YES; *SOURCE 3 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS *KEYWDS PROTEIN, STRUCTURES FROM DYANA, NEUROPEPTIDE *EXPDTA NMR, 20 STRUCTURES *AUTHOR A.K.MANTHA, I.R.CHANDRASHEKAR, N.Z.BAQUER, S.M.COWSIK *REVDAT 1 10-AUG-04 1P9F 0 ; save_