data_wwPDB_remediated_restraints_file_for_PDB_entry_1rxr # This wwPDB archive file contains, for PDB entry 1rxr: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389–396. save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_1rxr _Entry.Title "wwPDB remediated NMR restraints for PDB entry 1rxr" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 1rxr" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_1rxr _Assembly.ID 1 _Assembly.Name 1rxr _Assembly.Number_of_components 3 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 2 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "all free" _Assembly.Molecular_mass 9928.0346 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 "RETINOIC ACID RECEPTOR ALPHA" 1 $RETINOIC_ACID_RECEPTOR_ALPHA A . no . . . . . . rr_1rxr 1 2 "ZINC ION" 2 $ZINC_ION B . no . . . . . . rr_1rxr 1 3 "ZINC ION" 2 $ZINC_ION C . no . . . . . . rr_1rxr 1 stop_ save_ save_RETINOIC_ACID_RECEPTOR_ALPHA _Entity.Sf_category entity _Entity.Sf_framecode RETINOIC_ACID_RECEPTOR_ALPHA _Entity.Entry_ID rr_1rxr _Entity.ID 1 _Entity.Name RETINOIC_ACID_RECEPTOR_ALPHA _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code ; FTKHICAICGDRSSGKHYGV YSCEGCKGFFKRTVRKDLTY TCRDNKDCLIDKRQRNRCQY CRYQKALAMGMKREAVQEER QRG ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 83 _Entity.Paramagnetic no _Entity.Thiol_state "all free" _Entity.Parent_entity_ID 1 _Entity.Formula_weight 9797.2746 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . PHE . rr_1rxr 1 2 . THR . rr_1rxr 1 3 . LYS . rr_1rxr 1 4 . HIS . rr_1rxr 1 5 . ILE . rr_1rxr 1 6 . CYS . rr_1rxr 1 7 . ALA . rr_1rxr 1 8 . ILE . rr_1rxr 1 9 . CYS . rr_1rxr 1 10 . GLY . rr_1rxr 1 11 . ASP . rr_1rxr 1 12 . ARG . rr_1rxr 1 13 . SER . rr_1rxr 1 14 . SER . rr_1rxr 1 15 . GLY . rr_1rxr 1 16 . LYS . rr_1rxr 1 17 . HIS . rr_1rxr 1 18 . TYR . rr_1rxr 1 19 . GLY . rr_1rxr 1 20 . VAL . rr_1rxr 1 21 . TYR . rr_1rxr 1 22 . SER . rr_1rxr 1 23 . CYS . rr_1rxr 1 24 . GLU . rr_1rxr 1 25 . GLY . rr_1rxr 1 26 . CYS . rr_1rxr 1 27 . LYS . rr_1rxr 1 28 . GLY . rr_1rxr 1 29 . PHE . rr_1rxr 1 30 . PHE . rr_1rxr 1 31 . LYS . rr_1rxr 1 32 . ARG . rr_1rxr 1 33 . THR . rr_1rxr 1 34 . VAL . rr_1rxr 1 35 . ARG . rr_1rxr 1 36 . LYS . rr_1rxr 1 37 . ASP . rr_1rxr 1 38 . LEU . rr_1rxr 1 39 . THR . rr_1rxr 1 40 . TYR . rr_1rxr 1 41 . THR . rr_1rxr 1 42 . CYS . rr_1rxr 1 43 . ARG . rr_1rxr 1 44 . ASP . rr_1rxr 1 45 . ASN . rr_1rxr 1 46 . LYS . rr_1rxr 1 47 . ASP . rr_1rxr 1 48 . CYS . rr_1rxr 1 49 . LEU . rr_1rxr 1 50 . ILE . rr_1rxr 1 51 . ASP . rr_1rxr 1 52 . LYS . rr_1rxr 1 53 . ARG . rr_1rxr 1 54 . GLN . rr_1rxr 1 55 . ARG . rr_1rxr 1 56 . ASN . rr_1rxr 1 57 . ARG . rr_1rxr 1 58 . CYS . rr_1rxr 1 59 . GLN . rr_1rxr 1 60 . TYR . rr_1rxr 1 61 . CYS . rr_1rxr 1 62 . ARG . rr_1rxr 1 63 . TYR . rr_1rxr 1 64 . GLN . rr_1rxr 1 65 . LYS . rr_1rxr 1 66 . ALA . rr_1rxr 1 67 . LEU . rr_1rxr 1 68 . ALA . rr_1rxr 1 69 . MET . rr_1rxr 1 70 . GLY . rr_1rxr 1 71 . MET . rr_1rxr 1 72 . LYS . rr_1rxr 1 73 . ARG . rr_1rxr 1 74 . GLU . rr_1rxr 1 75 . ALA . rr_1rxr 1 76 . VAL . rr_1rxr 1 77 . GLN . rr_1rxr 1 78 . GLU . rr_1rxr 1 79 . GLU . rr_1rxr 1 80 . ARG . rr_1rxr 1 81 . GLN . rr_1rxr 1 82 . ARG . rr_1rxr 1 83 . GLY . rr_1rxr 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . PHE 1 1 rr_1rxr 1 . THR 2 2 rr_1rxr 1 . LYS 3 3 rr_1rxr 1 . HIS 4 4 rr_1rxr 1 . ILE 5 5 rr_1rxr 1 . CYS 6 6 rr_1rxr 1 . ALA 7 7 rr_1rxr 1 . ILE 8 8 rr_1rxr 1 . CYS 9 9 rr_1rxr 1 . GLY 10 10 rr_1rxr 1 . ASP 11 11 rr_1rxr 1 . ARG 12 12 rr_1rxr 1 . SER 13 13 rr_1rxr 1 . SER 14 14 rr_1rxr 1 . GLY 15 15 rr_1rxr 1 . LYS 16 16 rr_1rxr 1 . HIS 17 17 rr_1rxr 1 . TYR 18 18 rr_1rxr 1 . GLY 19 19 rr_1rxr 1 . VAL 20 20 rr_1rxr 1 . TYR 21 21 rr_1rxr 1 . SER 22 22 rr_1rxr 1 . CYS 23 23 rr_1rxr 1 . GLU 24 24 rr_1rxr 1 . GLY 25 25 rr_1rxr 1 . CYS 26 26 rr_1rxr 1 . LYS 27 27 rr_1rxr 1 . GLY 28 28 rr_1rxr 1 . PHE 29 29 rr_1rxr 1 . PHE 30 30 rr_1rxr 1 . LYS 31 31 rr_1rxr 1 . ARG 32 32 rr_1rxr 1 . THR 33 33 rr_1rxr 1 . VAL 34 34 rr_1rxr 1 . ARG 35 35 rr_1rxr 1 . LYS 36 36 rr_1rxr 1 . ASP 37 37 rr_1rxr 1 . LEU 38 38 rr_1rxr 1 . THR 39 39 rr_1rxr 1 . TYR 40 40 rr_1rxr 1 . THR 41 41 rr_1rxr 1 . CYS 42 42 rr_1rxr 1 . ARG 43 43 rr_1rxr 1 . ASP 44 44 rr_1rxr 1 . ASN 45 45 rr_1rxr 1 . LYS 46 46 rr_1rxr 1 . ASP 47 47 rr_1rxr 1 . CYS 48 48 rr_1rxr 1 . LEU 49 49 rr_1rxr 1 . ILE 50 50 rr_1rxr 1 . ASP 51 51 rr_1rxr 1 . LYS 52 52 rr_1rxr 1 . ARG 53 53 rr_1rxr 1 . GLN 54 54 rr_1rxr 1 . ARG 55 55 rr_1rxr 1 . ASN 56 56 rr_1rxr 1 . ARG 57 57 rr_1rxr 1 . CYS 58 58 rr_1rxr 1 . GLN 59 59 rr_1rxr 1 . TYR 60 60 rr_1rxr 1 . CYS 61 61 rr_1rxr 1 . ARG 62 62 rr_1rxr 1 . TYR 63 63 rr_1rxr 1 . GLN 64 64 rr_1rxr 1 . LYS 65 65 rr_1rxr 1 . ALA 66 66 rr_1rxr 1 . LEU 67 67 rr_1rxr 1 . ALA 68 68 rr_1rxr 1 . MET 69 69 rr_1rxr 1 . GLY 70 70 rr_1rxr 1 . MET 71 71 rr_1rxr 1 . LYS 72 72 rr_1rxr 1 . ARG 73 73 rr_1rxr 1 . GLU 74 74 rr_1rxr 1 . ALA 75 75 rr_1rxr 1 . VAL 76 76 rr_1rxr 1 . GLN 77 77 rr_1rxr 1 . GLU 78 78 rr_1rxr 1 . GLU 79 79 rr_1rxr 1 . ARG 80 80 rr_1rxr 1 . GLN 81 81 rr_1rxr 1 . ARG 82 82 rr_1rxr 1 . GLY 83 83 rr_1rxr 1 stop_ save_ save_ZINC_ION _Entity.Sf_category entity _Entity.Sf_framecode ZINC_ION _Entity.Entry_ID rr_1rxr _Entity.ID 2 _Entity.Name ZINC_ION _Entity.Type non-polymer _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_chirality yes _Entity.Nstd_linkage no _Entity.Nonpolymer_comp_ID ZN _Entity.Nonpolymer_comp_label $chem_comp_ZN _Entity.Number_of_monomers 1 _Entity.Paramagnetic no _Entity.Thiol_state "not present" _Entity.Parent_entity_ID 2 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . ZN . rr_1rxr 2 stop_ save_ save_chem_comp_ZN _Chem_comp.Sf_category chem_comp _Chem_comp.Sf_framecode chem_comp_ZN _Chem_comp.Entry_ID rr_1rxr _Chem_comp.ID ZN _Chem_comp.Name "ZINC ION" _Chem_comp.Type non-polymer _Chem_comp.PDB_code ZN _Chem_comp.Formal_charge 2 _Chem_comp.Paramagnetic no _Chem_comp.Aromatic no _Chem_comp.Formula Zn _Chem_comp.Formula_weight 65.38 save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_1rxr _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 20 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_1rxr _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 1rxr.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_1rxr 1 1 1rxr.mr . . AMBER 2 "dihedral angle" "Not applicable" "Not applicable" 0 rr_1rxr 1 1 1rxr.mr . . AMBER 3 distance NOE simple 0 rr_1rxr 1 1 1rxr.mr . . AMBER 4 stereochemistry chirality "Not applicable" 0 rr_1rxr 1 1 1rxr.mr . . AMBER 5 "dihedral angle" "Not applicable" "Not applicable" 0 rr_1rxr 1 1 1rxr.mr . . AMBER 6 "dihedral angle" "Not applicable" "Not applicable" 0 rr_1rxr 1 1 1rxr.mr . . "MR format" 7 "nomenclature mapping" "Not applicable" "Not applicable" 0 rr_1rxr 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_1rxr _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER TRANSCRIPTION FACTOR 12-JUN-98 1RXR *TITLE HIGH RESOLUTION SOLUTION STRUCTURE OF THE RETINOID X *TITLE 2 RECEPTOR DNA BINDING DOMAIN, NMR, 20 STRUCTURE *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: RETINOIC ACID RECEPTOR-ALPHA; *COMPND 3 CHAIN: NULL; *COMPND 4 FRAGMENT: DNA-BINDING DOMAIN, 130-212; *COMPND 5 SYNONYM: RXR-ALPHA; *COMPND 6 ENGINEERED: YES; *COMPND 7 MUTATION: C195A *SOURCE MOL_ID: 1; *SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; *SOURCE 3 ORGANISM_COMMON: HUMAN; *SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; *SOURCE 5 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); *SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET24A *KEYWDS TRANSCRIPTION FACTOR, NUCLEAR HORMONE RECEPTOR, *KEYWDS 2 ZINC-FINGER *EXPDTA NMR, 20 STRUCTURES *AUTHOR S.M.A.HOLMBECK,M.P.FOSTER,D.R.CASIMIRO,D.S.SEM,H.J.DYSON, *AUTHOR 2 P.E.WRIGHT *REVDAT 1 11-NOV-98 1RXR 0 ; save_