data_wwPDB_remediated_restraints_file_for_PDB_entry_1skk # This wwPDB archive file contains, for PDB entry 1skk: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389–396. save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_1skk _Entry.Title "wwPDB remediated NMR restraints for PDB entry 1skk" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 1skk" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_1skk _Assembly.ID 1 _Assembly.Name 1skk _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "not present" _Assembly.Molecular_mass 924.1536 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 "cyclic hexapeptide KKWWKF" 1 $cyclic_hexapeptide_KKWWKF A . no . . . . . . rr_1skk 1 stop_ save_ save_cyclic_hexapeptide_KKWWKF _Entity.Sf_category entity _Entity.Sf_framecode cyclic_hexapeptide_KKWWKF _Entity.Entry_ID rr_1skk _Entity.ID 1 _Entity.Name cyclic_hexapeptide_KKWWKF _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code KKWWKF _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 6 _Entity.Paramagnetic no _Entity.Thiol_state "not present" _Entity.Parent_entity_ID 1 _Entity.Formula_weight 924.1536 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . LYS . rr_1skk 1 2 . LYS . rr_1skk 1 3 . TRP . rr_1skk 1 4 . TRP . rr_1skk 1 5 . LYS . rr_1skk 1 6 . PHE . rr_1skk 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . LYS 1 1 rr_1skk 1 . LYS 2 2 rr_1skk 1 . TRP 3 3 rr_1skk 1 . TRP 4 4 rr_1skk 1 . LYS 5 5 rr_1skk 1 . PHE 6 6 rr_1skk 1 stop_ save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_1skk _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 10 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_1skk _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 1skk.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_1skk 1 1 1skk.mr . . AMBER 2 distance NOE simple 0 rr_1skk 1 1 1skk.mr . . AMBER 3 "dihedral angle" "Not applicable" "Not applicable" 0 rr_1skk 1 1 1skk.mr . . AMBER 4 stereochemistry chirality "Not applicable" 0 rr_1skk 1 1 1skk.mr . . "MR format" 5 "nomenclature mapping" "Not applicable" "Not applicable" 0 rr_1skk 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_1skk _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER ANTIMICROBIAL PROTEIN 05-MAR-04 1SKK *TITLE STRUCTURE OF THE ANTIMICROBIAL HEXAPEPTIDE CYC-(KKWWKF) *TITLE 2 BOUND TO DPC MICELLES *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: CYCLIC HEXAPEPTIDE KKWWKF; *COMPND 3 CHAIN: A; *COMPND 4 ENGINEERED: YES *SOURCE MOL_ID: 1; *SOURCE 2 SYNTHETIC: YES; *SOURCE 3 OTHER_DETAILS: SYNTHESIS OF THE LINEAR PEPTIDE BY THE *SOURCE 4 SOLID-PHASE METHOD USING STANDARD FMOC CHEMISTRY IN *SOURCE 5 CONTINUOUS FLOW MODE (MILLIGEN 9050 PEPTIDE SYNTHESIZER; *SOURCE 6 MILLIPORE, USA). CYCLIZATION MANUALLY BY APPLYING HAPYU- *SOURCE 7 CHEMISTRY. PURIFICATION BY RP-HPLC (SHIMADZU LC-10AD *SOURCE 8 SYSTEM), CHARACTERIZATION BY MATRIX-ASSISTED LASER *SOURCE 9 DESORPTION MASS SPECTROMETRY (MALDI II, KRATOS, MANCHESTER, *SOURCE 10 UK). *KEYWDS CYCLIC PEPTIDE; ANTIMICROBIAL PEPTIDE *EXPDTA NMR, 10 STRUCTURES *AUTHOR C.APPELT, J.A.SODERHALL, M.BIENERT, M.DATHE, P.SCHMIEDER *REVDAT 1 15-MAR-05 1SKK 0 ; save_