data_wwPDB_remediated_restraints_file_for_PDB_entry_1ss6 # This wwPDB archive file contains, for PDB entry 1ss6: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389-396. ####################### # Entry information # ####################### save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_1ss6 _Entry.Title 'wwPDB remediated NMR restraints for PDB entry 1ss6' _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details 'Contains the remediated restraint lists and coordinates for PDB entry 1ss6' save_ ############################################# # Molecular system (assembly) description # ############################################# save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_1ss6 _Assembly.ID 1 _Assembly.Name 1ss6 _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state 'not present' _Assembly.Molecular_mass 11352.5759 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 'NSFL1 cofactor p47' 1 $NSFL1_cofactor_p47 A . no . . . . . . rr_1ss6 1 stop_ save_ #################################### # Biological polymers and ligands # #################################### save_NSFL1_cofactor_p47 _Entity.Sf_category entity _Entity.Sf_framecode NSFL1_cofactor_p47 _Entity.Entry_ID rr_1ss6 _Entity.ID 1 _Entity.Name NSFL1_cofactor_p47 _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code ; GSEKRQHSSQDVHVVLKLWK SGFSLDNGELRSYQDPSNAQ FLESIRRGEVPAELRRLAHG GQVNLDMEDHRDEDFVKPKG AFKAFTGEGQKLGSTAPQVL ST ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 102 _Entity.Paramagnetic no _Entity.Thiol_state 'not present' _Entity.Parent_entity_ID 1 _Entity.Formula_weight 11352.5759 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . GLY . rr_1ss6 1 2 . SER . rr_1ss6 1 3 . GLU . rr_1ss6 1 4 . LYS . rr_1ss6 1 5 . ARG . rr_1ss6 1 6 . GLN . rr_1ss6 1 7 . HIS . rr_1ss6 1 8 . SER . rr_1ss6 1 9 . SER . rr_1ss6 1 10 . GLN . rr_1ss6 1 11 . ASP . rr_1ss6 1 12 . VAL . rr_1ss6 1 13 . HIS . rr_1ss6 1 14 . VAL . rr_1ss6 1 15 . VAL . rr_1ss6 1 16 . LEU . rr_1ss6 1 17 . LYS . rr_1ss6 1 18 . LEU . rr_1ss6 1 19 . TRP . rr_1ss6 1 20 . LYS . rr_1ss6 1 21 . SER . rr_1ss6 1 22 . GLY . rr_1ss6 1 23 . PHE . rr_1ss6 1 24 . SER . rr_1ss6 1 25 . LEU . rr_1ss6 1 26 . ASP . rr_1ss6 1 27 . ASN . rr_1ss6 1 28 . GLY . rr_1ss6 1 29 . GLU . rr_1ss6 1 30 . LEU . rr_1ss6 1 31 . ARG . rr_1ss6 1 32 . SER . rr_1ss6 1 33 . TYR . rr_1ss6 1 34 . GLN . rr_1ss6 1 35 . ASP . rr_1ss6 1 36 . PRO . rr_1ss6 1 37 . SER . rr_1ss6 1 38 . ASN . rr_1ss6 1 39 . ALA . rr_1ss6 1 40 . GLN . rr_1ss6 1 41 . PHE . rr_1ss6 1 42 . LEU . rr_1ss6 1 43 . GLU . rr_1ss6 1 44 . SER . rr_1ss6 1 45 . ILE . rr_1ss6 1 46 . ARG . rr_1ss6 1 47 . ARG . rr_1ss6 1 48 . GLY . rr_1ss6 1 49 . GLU . rr_1ss6 1 50 . VAL . rr_1ss6 1 51 . PRO . rr_1ss6 1 52 . ALA . rr_1ss6 1 53 . GLU . rr_1ss6 1 54 . LEU . rr_1ss6 1 55 . ARG . rr_1ss6 1 56 . ARG . rr_1ss6 1 57 . LEU . rr_1ss6 1 58 . ALA . rr_1ss6 1 59 . HIS . rr_1ss6 1 60 . GLY . rr_1ss6 1 61 . GLY . rr_1ss6 1 62 . GLN . rr_1ss6 1 63 . VAL . rr_1ss6 1 64 . ASN . rr_1ss6 1 65 . LEU . rr_1ss6 1 66 . ASP . rr_1ss6 1 67 . MET . rr_1ss6 1 68 . GLU . rr_1ss6 1 69 . ASP . rr_1ss6 1 70 . HIS . rr_1ss6 1 71 . ARG . rr_1ss6 1 72 . ASP . rr_1ss6 1 73 . GLU . rr_1ss6 1 74 . ASP . rr_1ss6 1 75 . PHE . rr_1ss6 1 76 . VAL . rr_1ss6 1 77 . LYS . rr_1ss6 1 78 . PRO . rr_1ss6 1 79 . LYS . rr_1ss6 1 80 . GLY . rr_1ss6 1 81 . ALA . rr_1ss6 1 82 . PHE . rr_1ss6 1 83 . LYS . rr_1ss6 1 84 . ALA . rr_1ss6 1 85 . PHE . rr_1ss6 1 86 . THR . rr_1ss6 1 87 . GLY . rr_1ss6 1 88 . GLU . rr_1ss6 1 89 . GLY . rr_1ss6 1 90 . GLN . rr_1ss6 1 91 . LYS . rr_1ss6 1 92 . LEU . rr_1ss6 1 93 . GLY . rr_1ss6 1 94 . SER . rr_1ss6 1 95 . THR . rr_1ss6 1 96 . ALA . rr_1ss6 1 97 . PRO . rr_1ss6 1 98 . GLN . rr_1ss6 1 99 . VAL . rr_1ss6 1 100 . LEU . rr_1ss6 1 101 . SER . rr_1ss6 1 102 . THR . rr_1ss6 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . GLY 1 1 rr_1ss6 1 . SER 2 2 rr_1ss6 1 . GLU 3 3 rr_1ss6 1 . LYS 4 4 rr_1ss6 1 . ARG 5 5 rr_1ss6 1 . GLN 6 6 rr_1ss6 1 . HIS 7 7 rr_1ss6 1 . SER 8 8 rr_1ss6 1 . SER 9 9 rr_1ss6 1 . GLN 10 10 rr_1ss6 1 . ASP 11 11 rr_1ss6 1 . VAL 12 12 rr_1ss6 1 . HIS 13 13 rr_1ss6 1 . VAL 14 14 rr_1ss6 1 . VAL 15 15 rr_1ss6 1 . LEU 16 16 rr_1ss6 1 . LYS 17 17 rr_1ss6 1 . LEU 18 18 rr_1ss6 1 . TRP 19 19 rr_1ss6 1 . LYS 20 20 rr_1ss6 1 . SER 21 21 rr_1ss6 1 . GLY 22 22 rr_1ss6 1 . PHE 23 23 rr_1ss6 1 . SER 24 24 rr_1ss6 1 . LEU 25 25 rr_1ss6 1 . ASP 26 26 rr_1ss6 1 . ASN 27 27 rr_1ss6 1 . GLY 28 28 rr_1ss6 1 . GLU 29 29 rr_1ss6 1 . LEU 30 30 rr_1ss6 1 . ARG 31 31 rr_1ss6 1 . SER 32 32 rr_1ss6 1 . TYR 33 33 rr_1ss6 1 . GLN 34 34 rr_1ss6 1 . ASP 35 35 rr_1ss6 1 . PRO 36 36 rr_1ss6 1 . SER 37 37 rr_1ss6 1 . ASN 38 38 rr_1ss6 1 . ALA 39 39 rr_1ss6 1 . GLN 40 40 rr_1ss6 1 . PHE 41 41 rr_1ss6 1 . LEU 42 42 rr_1ss6 1 . GLU 43 43 rr_1ss6 1 . SER 44 44 rr_1ss6 1 . ILE 45 45 rr_1ss6 1 . ARG 46 46 rr_1ss6 1 . ARG 47 47 rr_1ss6 1 . GLY 48 48 rr_1ss6 1 . GLU 49 49 rr_1ss6 1 . VAL 50 50 rr_1ss6 1 . PRO 51 51 rr_1ss6 1 . ALA 52 52 rr_1ss6 1 . GLU 53 53 rr_1ss6 1 . LEU 54 54 rr_1ss6 1 . ARG 55 55 rr_1ss6 1 . ARG 56 56 rr_1ss6 1 . LEU 57 57 rr_1ss6 1 . ALA 58 58 rr_1ss6 1 . HIS 59 59 rr_1ss6 1 . GLY 60 60 rr_1ss6 1 . GLY 61 61 rr_1ss6 1 . GLN 62 62 rr_1ss6 1 . VAL 63 63 rr_1ss6 1 . ASN 64 64 rr_1ss6 1 . LEU 65 65 rr_1ss6 1 . ASP 66 66 rr_1ss6 1 . MET 67 67 rr_1ss6 1 . GLU 68 68 rr_1ss6 1 . ASP 69 69 rr_1ss6 1 . HIS 70 70 rr_1ss6 1 . ARG 71 71 rr_1ss6 1 . ASP 72 72 rr_1ss6 1 . GLU 73 73 rr_1ss6 1 . ASP 74 74 rr_1ss6 1 . PHE 75 75 rr_1ss6 1 . VAL 76 76 rr_1ss6 1 . LYS 77 77 rr_1ss6 1 . PRO 78 78 rr_1ss6 1 . LYS 79 79 rr_1ss6 1 . GLY 80 80 rr_1ss6 1 . ALA 81 81 rr_1ss6 1 . PHE 82 82 rr_1ss6 1 . LYS 83 83 rr_1ss6 1 . ALA 84 84 rr_1ss6 1 . PHE 85 85 rr_1ss6 1 . THR 86 86 rr_1ss6 1 . GLY 87 87 rr_1ss6 1 . GLU 88 88 rr_1ss6 1 . GLY 89 89 rr_1ss6 1 . GLN 90 90 rr_1ss6 1 . LYS 91 91 rr_1ss6 1 . LEU 92 92 rr_1ss6 1 . GLY 93 93 rr_1ss6 1 . SER 94 94 rr_1ss6 1 . THR 95 95 rr_1ss6 1 . ALA 96 96 rr_1ss6 1 . PRO 97 97 rr_1ss6 1 . GLN 98 98 rr_1ss6 1 . VAL 99 99 rr_1ss6 1 . LEU 100 100 rr_1ss6 1 . SER 101 101 rr_1ss6 1 . THR 102 102 rr_1ss6 1 stop_ save_ ############################## # Structure determinations # ############################## ########################## # Conformer statistics # ########################## save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_1ss6 _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 20 save_ ########################### # Constraint Statistics # ########################### save_constraint_statistics _Constraint_stat_list.Sf_framecode constraint_statistics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_1ss6 _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 1ss6.mr . . 'MR format' 1 comment 'Not applicable' 'Not applicable' 0 rr_1ss6 1 1 1ss6.mr . . unknown 2 peak 'Not applicable' 'Not applicable' 0 rr_1ss6 1 1 1ss6.mr . . 'MR format' 3 'nomenclature mapping' 'Not applicable' 'Not applicable' 0 rr_1ss6 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_1ss6 _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details 'Generated by Wattos' _Org_constr_file_comment.Comment ; *HEADER SIGNALING PROTEIN 23-MAR-04 1SS6 *TITLE SOLUTION STRUCTURE OF SEP DOMAIN FROM HUMAN P47 *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: NSFL1 COFACTOR P47; *COMPND 3 CHAIN: A; *COMPND 4 FRAGMENT: SEP DOMAIN; *COMPND 5 SYNONYM: P47; P47 PROTEIN ISOFORM A; P47 PROTEIN; P97 *COMPND 6 COFACTOR P47; *COMPND 7 ENGINEERED: YES *SOURCE MOL_ID: 1; *SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; *SOURCE 3 ORGANISM_COMMON: HUMAN; *SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; *SOURCE 5 EXPRESSION_SYSTEM_COMMON: BACTERIA *KEYWDS NMR; P47; SEP *EXPDTA NMR, 20 STRUCTURES *AUTHOR M.SOUKENIK, M.LEIDERT, V.SIEVERT, K.BUESSOW, D.LEITNER, *AUTHOR 2 D.LABUDDE, L.J.BALL, H.OSCHKINAT *REVDAT 1 09-NOV-04 1SS6 0 ; save_