data_wwPDB_remediated_restraints_file_for_PDB_entry_1tur # This wwPDB archive file contains, for PDB entry 1tur: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389–396. save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_1tur _Entry.Title "wwPDB remediated NMR restraints for PDB entry 1tur" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 1tur" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_1tur _Assembly.ID 1 _Assembly.Name 1tur _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "all free" _Assembly.Molecular_mass 6015.7529 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 OVOMUCOID 1 $OVOMUCOID A . no . . . . . . rr_1tur 1 stop_ save_ save_OVOMUCOID _Entity.Sf_category entity _Entity.Sf_framecode OVOMUCOID _Entity.Entry_ID rr_1tur _Entity.ID 1 _Entity.Name OVOMUCOID _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code ; LAAVSVDCSEYPKPACTLEY RPLCGSDNKTYGNKCNFCNA VVESNGTLTLSHFGKC ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 56 _Entity.Paramagnetic no _Entity.Thiol_state "all free" _Entity.Parent_entity_ID 1 _Entity.Formula_weight 6015.7529 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . LEU . rr_1tur 1 2 . ALA . rr_1tur 1 3 . ALA . rr_1tur 1 4 . VAL . rr_1tur 1 5 . SER . rr_1tur 1 6 . VAL . rr_1tur 1 7 . ASP . rr_1tur 1 8 . CYS . rr_1tur 1 9 . SER . rr_1tur 1 10 . GLU . rr_1tur 1 11 . TYR . rr_1tur 1 12 . PRO . rr_1tur 1 13 . LYS . rr_1tur 1 14 . PRO . rr_1tur 1 15 . ALA . rr_1tur 1 16 . CYS . rr_1tur 1 17 . THR . rr_1tur 1 18 . LEU . rr_1tur 1 19 . GLU . rr_1tur 1 20 . TYR . rr_1tur 1 21 . ARG . rr_1tur 1 22 . PRO . rr_1tur 1 23 . LEU . rr_1tur 1 24 . CYS . rr_1tur 1 25 . GLY . rr_1tur 1 26 . SER . rr_1tur 1 27 . ASP . rr_1tur 1 28 . ASN . rr_1tur 1 29 . LYS . rr_1tur 1 30 . THR . rr_1tur 1 31 . TYR . rr_1tur 1 32 . GLY . rr_1tur 1 33 . ASN . rr_1tur 1 34 . LYS . rr_1tur 1 35 . CYS . rr_1tur 1 36 . ASN . rr_1tur 1 37 . PHE . rr_1tur 1 38 . CYS . rr_1tur 1 39 . ASN . rr_1tur 1 40 . ALA . rr_1tur 1 41 . VAL . rr_1tur 1 42 . VAL . rr_1tur 1 43 . GLU . rr_1tur 1 44 . SER . rr_1tur 1 45 . ASN . rr_1tur 1 46 . GLY . rr_1tur 1 47 . THR . rr_1tur 1 48 . LEU . rr_1tur 1 49 . THR . rr_1tur 1 50 . LEU . rr_1tur 1 51 . SER . rr_1tur 1 52 . HIS . rr_1tur 1 53 . PHE . rr_1tur 1 54 . GLY . rr_1tur 1 55 . LYS . rr_1tur 1 56 . CYS . rr_1tur 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . LEU 1 1 rr_1tur 1 . ALA 2 2 rr_1tur 1 . ALA 3 3 rr_1tur 1 . VAL 4 4 rr_1tur 1 . SER 5 5 rr_1tur 1 . VAL 6 6 rr_1tur 1 . ASP 7 7 rr_1tur 1 . CYS 8 8 rr_1tur 1 . SER 9 9 rr_1tur 1 . GLU 10 10 rr_1tur 1 . TYR 11 11 rr_1tur 1 . PRO 12 12 rr_1tur 1 . LYS 13 13 rr_1tur 1 . PRO 14 14 rr_1tur 1 . ALA 15 15 rr_1tur 1 . CYS 16 16 rr_1tur 1 . THR 17 17 rr_1tur 1 . LEU 18 18 rr_1tur 1 . GLU 19 19 rr_1tur 1 . TYR 20 20 rr_1tur 1 . ARG 21 21 rr_1tur 1 . PRO 22 22 rr_1tur 1 . LEU 23 23 rr_1tur 1 . CYS 24 24 rr_1tur 1 . GLY 25 25 rr_1tur 1 . SER 26 26 rr_1tur 1 . ASP 27 27 rr_1tur 1 . ASN 28 28 rr_1tur 1 . LYS 29 29 rr_1tur 1 . THR 30 30 rr_1tur 1 . TYR 31 31 rr_1tur 1 . GLY 32 32 rr_1tur 1 . ASN 33 33 rr_1tur 1 . LYS 34 34 rr_1tur 1 . CYS 35 35 rr_1tur 1 . ASN 36 36 rr_1tur 1 . PHE 37 37 rr_1tur 1 . CYS 38 38 rr_1tur 1 . ASN 39 39 rr_1tur 1 . ALA 40 40 rr_1tur 1 . VAL 41 41 rr_1tur 1 . VAL 42 42 rr_1tur 1 . GLU 43 43 rr_1tur 1 . SER 44 44 rr_1tur 1 . ASN 45 45 rr_1tur 1 . GLY 46 46 rr_1tur 1 . THR 47 47 rr_1tur 1 . LEU 48 48 rr_1tur 1 . THR 49 49 rr_1tur 1 . LEU 50 50 rr_1tur 1 . SER 51 51 rr_1tur 1 . HIS 52 52 rr_1tur 1 . PHE 53 53 rr_1tur 1 . GLY 54 54 rr_1tur 1 . LYS 55 55 rr_1tur 1 . CYS 56 56 rr_1tur 1 stop_ save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_1tur _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 12 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_1tur _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 1tur.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_1tur 1 1 1tur.mr . . DSPACE 2 distance NOE simple 0 rr_1tur 1 1 1tur.mr . . DSPACE 3 stereochemistry prochirality "Not applicable" 0 rr_1tur 1 1 1tur.mr . . DSPACE 4 distance "hydrogen bond" simple 0 rr_1tur 1 1 1tur.mr . . "MR format" 5 "nomenclature mapping" "Not applicable" "Not applicable" 0 rr_1tur 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_1tur _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER SERINE PROTEINASE INHIBITOR 06-JUL-94 1TUR *COMPND OVOMUCOID (THIRD DOMAIN) (NMR, 12 STRUCTURES) *SOURCE TURKEY (MELEAGRIS GALLOPAVO) *EXPDTA NMR *AUTHOR A.M.KREZEL,P.DARBA,A.D.ROBERTSON,J.FEJZO,S.MACURA, *AUTHOR 2 J.L.MARKLEY *REVDAT 1 15-OCT-94 1TUR 0 This is Dspace input file, with Dspace specific atom names. Methyl groups (starting with 'm') have 1A corrections added for each methyl group involved. Prochiral assignments are indicated with 'r' and 's' (or 'z' and 'e')in atom names. Lines starting with ';' are comments. Atom names in PDB coordinates file do not correspond to the Dspace names in many cases. c**up7t.cmd ; total input for testing 1991-2-26 define/equivalent hbs[5] hbr[5] define/equivalent hbs[14] hbr[14] define/equivalent hgs[14] hgr[14] define/equivalent hbs[19] hbr[19] define/equivalent hbs[21] hbr[21] ;define/equivalent hbs[22] hbr[22] define/equivalent hgs[22] hgr[22] define/equivalent hds[22] hdr[22] define/equivalent hbs[23] hbr[23] ; equivalence before everything for all aromatics ;define/equivalent hd1[11] hd2[11] ;define/equivalent he1[11] he2[11] ; ;define/equivalent hd1[20] hd2[20] ;define/equivalent he1[20] he2[20] ; ;define/equivalent hd1[31] hd2[31] ;define/equivalent he1[31] he2[31] ; ;define/equivalent hd1[37] hd2[37] ;define/equivalent he1[37] he2[37] ; ;define/equivalent hd1[53] hd2[53] ;define/equivalent he1[53] he2[53] ; ; save_