data_wwPDB_remediated_restraints_file_for_PDB_entry_1tus # This wwPDB archive file contains, for PDB entry 1tus: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389–396. save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_1tus _Entry.Title "wwPDB remediated NMR restraints for PDB entry 1tus" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 1tus" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_1tus _Assembly.ID 1 _Assembly.Name 1tus _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "all free" _Assembly.Molecular_mass 6015.7529 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 OVOMUCOID 1 $OVOMUCOID A . no . . . . . . rr_1tus 1 stop_ save_ save_OVOMUCOID _Entity.Sf_category entity _Entity.Sf_framecode OVOMUCOID _Entity.Entry_ID rr_1tus _Entity.ID 1 _Entity.Name OVOMUCOID _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code ; LAAVSVDCSEYPKPACTLEY RPLCGSDNKTYGNKCNFCNA VVESNGTLTLSHFGKC ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 56 _Entity.Paramagnetic no _Entity.Thiol_state "all free" _Entity.Parent_entity_ID 1 _Entity.Formula_weight 6015.7529 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . LEU . rr_1tus 1 2 . ALA . rr_1tus 1 3 . ALA . rr_1tus 1 4 . VAL . rr_1tus 1 5 . SER . rr_1tus 1 6 . VAL . rr_1tus 1 7 . ASP . rr_1tus 1 8 . CYS . rr_1tus 1 9 . SER . rr_1tus 1 10 . GLU . rr_1tus 1 11 . TYR . rr_1tus 1 12 . PRO . rr_1tus 1 13 . LYS . rr_1tus 1 14 . PRO . rr_1tus 1 15 . ALA . rr_1tus 1 16 . CYS . rr_1tus 1 17 . THR . rr_1tus 1 18 . LEU . rr_1tus 1 19 . GLU . rr_1tus 1 20 . TYR . rr_1tus 1 21 . ARG . rr_1tus 1 22 . PRO . rr_1tus 1 23 . LEU . rr_1tus 1 24 . CYS . rr_1tus 1 25 . GLY . rr_1tus 1 26 . SER . rr_1tus 1 27 . ASP . rr_1tus 1 28 . ASN . rr_1tus 1 29 . LYS . rr_1tus 1 30 . THR . rr_1tus 1 31 . TYR . rr_1tus 1 32 . GLY . rr_1tus 1 33 . ASN . rr_1tus 1 34 . LYS . rr_1tus 1 35 . CYS . rr_1tus 1 36 . ASN . rr_1tus 1 37 . PHE . rr_1tus 1 38 . CYS . rr_1tus 1 39 . ASN . rr_1tus 1 40 . ALA . rr_1tus 1 41 . VAL . rr_1tus 1 42 . VAL . rr_1tus 1 43 . GLU . rr_1tus 1 44 . SER . rr_1tus 1 45 . ASN . rr_1tus 1 46 . GLY . rr_1tus 1 47 . THR . rr_1tus 1 48 . LEU . rr_1tus 1 49 . THR . rr_1tus 1 50 . LEU . rr_1tus 1 51 . SER . rr_1tus 1 52 . HIS . rr_1tus 1 53 . PHE . rr_1tus 1 54 . GLY . rr_1tus 1 55 . LYS . rr_1tus 1 56 . CYS . rr_1tus 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . LEU 1 1 rr_1tus 1 . ALA 2 2 rr_1tus 1 . ALA 3 3 rr_1tus 1 . VAL 4 4 rr_1tus 1 . SER 5 5 rr_1tus 1 . VAL 6 6 rr_1tus 1 . ASP 7 7 rr_1tus 1 . CYS 8 8 rr_1tus 1 . SER 9 9 rr_1tus 1 . GLU 10 10 rr_1tus 1 . TYR 11 11 rr_1tus 1 . PRO 12 12 rr_1tus 1 . LYS 13 13 rr_1tus 1 . PRO 14 14 rr_1tus 1 . ALA 15 15 rr_1tus 1 . CYS 16 16 rr_1tus 1 . THR 17 17 rr_1tus 1 . LEU 18 18 rr_1tus 1 . GLU 19 19 rr_1tus 1 . TYR 20 20 rr_1tus 1 . ARG 21 21 rr_1tus 1 . PRO 22 22 rr_1tus 1 . LEU 23 23 rr_1tus 1 . CYS 24 24 rr_1tus 1 . GLY 25 25 rr_1tus 1 . SER 26 26 rr_1tus 1 . ASP 27 27 rr_1tus 1 . ASN 28 28 rr_1tus 1 . LYS 29 29 rr_1tus 1 . THR 30 30 rr_1tus 1 . TYR 31 31 rr_1tus 1 . GLY 32 32 rr_1tus 1 . ASN 33 33 rr_1tus 1 . LYS 34 34 rr_1tus 1 . CYS 35 35 rr_1tus 1 . ASN 36 36 rr_1tus 1 . PHE 37 37 rr_1tus 1 . CYS 38 38 rr_1tus 1 . ASN 39 39 rr_1tus 1 . ALA 40 40 rr_1tus 1 . VAL 41 41 rr_1tus 1 . VAL 42 42 rr_1tus 1 . GLU 43 43 rr_1tus 1 . SER 44 44 rr_1tus 1 . ASN 45 45 rr_1tus 1 . GLY 46 46 rr_1tus 1 . THR 47 47 rr_1tus 1 . LEU 48 48 rr_1tus 1 . THR 49 49 rr_1tus 1 . LEU 50 50 rr_1tus 1 . SER 51 51 rr_1tus 1 . HIS 52 52 rr_1tus 1 . PHE 53 53 rr_1tus 1 . GLY 54 54 rr_1tus 1 . LYS 55 55 rr_1tus 1 . CYS 56 56 rr_1tus 1 stop_ save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_1tus _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 12 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_1tus _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 1tus.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_1tus 1 1 1tus.mr . . DSPACE 2 distance NOE simple 0 rr_1tus 1 1 1tus.mr . . DSPACE 3 distance NOE simple 0 rr_1tus 1 1 1tus.mr . . DSPACE 4 distance "hydrogen bond" simple 0 rr_1tus 1 1 1tus.mr . . DSPACE 5 stereochemistry prochirality "Not applicable" 0 rr_1tus 1 1 1tus.mr . . "MR format" 6 "nomenclature mapping" "Not applicable" "Not applicable" 0 rr_1tus 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_1tus _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER SERINE PROTEINASE INHIBITOR 06-JUL-94 1TUS *COMPND OVOMUCOID (REACTIVE-SITE HYDROLYZED THIRD DOMAIN) *COMPND 2 (NMR, 12 STRUCTURES) *SOURCE TURKEY (MELEAGRIS GALLOPAVO) *EXPDTA NMR *AUTHOR W.F.WALKENHORST,A.M.KREZEL,G.I.RHYU,J.L.MARKLEY *REVDAT 2 15-JAN-95 1TUSA 1 SOURCE *REVDAT 1 15-OCT-94 1TUS 0 ;DSPACE input for structure calculations of OMTKY3* ;W. F. Walkenhorst 8/31/91 611 NOE's, 24 backbone dihedral angles, 14 ;hbonds, 26 stereospecifically assigned pairs of beta protons,7 pairs of ;stereoassigned Leu,Val methyl groups and 3 stereospecifically assigned ;pairs of Asn delta protons. ;Atoms defined using DSPACE nomenclature ;Atoms defined "nochiral" or "equivalent" were not able to be assigned ;stereospecifically. Methyl groups are labeled as mgr[23] for a pro-R ;methyl group of Leu 23, A 1 angstrom correction factor is added to ;constraints involving methyl groups. Equivalent groups have correction ;factors also. Commented lines (";") indicate "nochiral" and "equivalent" ;or other options have been superceded. ; define/equivalent hgs[10] hgr[10] define/equivalent hgs[13] hgr[13] define/equivalent hds[14] hdr[14] define/equivalent hbs[18] hbr[18] define/equivalent hbs[19] hbr[19] define/equivalent hgs[19] hgr[19] define/equivalent hds[21] hdr[21] define/equivalent hgs[22] hgr[22] define/equivalent hds[22] hdr[22] define/equivalent hds[29] hdr[29] define/equivalent hes[29] her[29] define/equivalent hbs[31] hbr[31] define/equivalent hds[34] hdr[34] define/equivalent hes[34] her[34] define/equivalent hbs[37] hbr[37] define/equivalent hgs[43] hgr[43] define/equivalent hds[55] hdr[55] define/equivalent hes[55] her[55] ; ;initially, equivalence assigned for all aromatics ; ;define/equivalent hd1[11] hd2[11] ;define/equivalent he1[11] he2[11] ; ;define/equivalent hd1[20] hd2[20] ;define/equivalent he1[20] he2[20] ; ;define/equivalent hd1[31] hd2[31] ;define/equivalent he1[31] he2[31] ; ;define/equivalent hd1[37] hd2[37] ;define/equivalent he1[37] he2[37] ; ;define/equivalent hd1[53] hd2[53] ;define/equivalent he1[53] he2[53] ; ;Backbone coupling constraints ; ; save_