data_wwPDB_remediated_restraints_file_for_PDB_entry_1rht # This wwPDB archive file contains, for PDB entry 1rht: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389–396. save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_1rht _Entry.Title "wwPDB remediated NMR restraints for PDB entry 1rht" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 1rht" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_1rht _Assembly.ID 1 _Assembly.Name 1rht _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "not present" _Assembly.Molecular_mass 7772.67094 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 "RNA 5 R P GP GP GP AP CP UP GP AP CP GP AP UP CP AP CP GP CP AP GP UP CP U" 1 $RNA__5__R_P_GP_GP_GP_AP_CP_UP_GP_AP_CP_GP_AP_UP_CP_AP_CP_GP_CP_AP_GP_UP_CP_U A . no . . . . . . rr_1rht 1 stop_ save_ save_RNA__5__R_P_GP_GP_GP_AP_CP_UP_GP_AP_CP_GP_AP_UP_CP_AP_CP_GP_CP_AP_GP_UP_CP_U _Entity.Sf_category entity _Entity.Sf_framecode RNA__5__R_P_GP_GP_GP_AP_CP_UP_GP_AP_CP_GP_AP_UP_CP_AP_CP_GP_CP_AP_GP_UP_CP_U _Entity.Entry_ID rr_1rht _Entity.ID 1 _Entity.Name RNA__5__R_P_GP_GP_GP_AP_CP_UP_GP_AP_CP_GP_AP_UP_CP_AP_CP_GP_CP_AP_GP_UP_CP_U _Entity.Type polymer _Entity.Polymer_type polyribonucleotide _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code ; GGGACUGACGAUCACGCAGU CUAU ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality yes _Entity.Nstd_linkage no _Entity.Number_of_monomers 24 _Entity.Paramagnetic no _Entity.Thiol_state "not present" _Entity.Parent_entity_ID 1 _Entity.Formula_weight 7772.67094 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . G . rr_1rht 1 2 . G . rr_1rht 1 3 . G . rr_1rht 1 4 . A . rr_1rht 1 5 . C . rr_1rht 1 6 . U . rr_1rht 1 7 . G . rr_1rht 1 8 . A . rr_1rht 1 9 . C . rr_1rht 1 10 . G . rr_1rht 1 11 . A . rr_1rht 1 12 . U . rr_1rht 1 13 . C . rr_1rht 1 14 . A . rr_1rht 1 15 . C . rr_1rht 1 16 . G . rr_1rht 1 17 . C . rr_1rht 1 18 . A . rr_1rht 1 19 . G . rr_1rht 1 20 . U . rr_1rht 1 21 . C . rr_1rht 1 22 . U . rr_1rht 1 23 . A . rr_1rht 1 24 . U . rr_1rht 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . G 1 1 rr_1rht 1 . G 2 2 rr_1rht 1 . G 3 3 rr_1rht 1 . A 4 4 rr_1rht 1 . C 5 5 rr_1rht 1 . U 6 6 rr_1rht 1 . G 7 7 rr_1rht 1 . A 8 8 rr_1rht 1 . C 9 9 rr_1rht 1 . G 10 10 rr_1rht 1 . A 11 11 rr_1rht 1 . U 12 12 rr_1rht 1 . C 13 13 rr_1rht 1 . A 14 14 rr_1rht 1 . C 15 15 rr_1rht 1 . G 16 16 rr_1rht 1 . C 17 17 rr_1rht 1 . A 18 18 rr_1rht 1 . G 19 19 rr_1rht 1 . U 20 20 rr_1rht 1 . C 21 21 rr_1rht 1 . U 22 22 rr_1rht 1 . A 23 23 rr_1rht 1 . U 24 24 rr_1rht 1 stop_ save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_1rht _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 1 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_1rht _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 1rht.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_1rht 1 1 1rht.mr . . unknown 2 distance NOE simple 0 rr_1rht 1 1 1rht.mr . . "MR format" 3 "nomenclature mapping" "Not applicable" "Not applicable" 0 rr_1rht 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_1rht _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER RIBONUCLEIC ACID 03-MAR-95 1RHT *TITLE 24-MER RNA HAIRPIN COAT PROTEIN BINDING SITE FOR *TITLE 2 BACTERIOPHAGE R17 (NMR, MINIMIZED AVERAGE STRUCTURE) *COMPND RNA (5'-D(*GP*GP*GP*AP*CP*UP*GP*AP*CP*GP*AP*UP*CP*AP*CP*GP *COMPND 2 *CP*AP*GP*UP*CP*UP*AP*U-3') (24-MER RNA HAIRPIN COAT *COMPND 3 PROTEIN BINDING SITE FOR BACTERIOPHAGE R17) *SOURCE SYNTHETIC *KEYWDS HAIRPIN, BACTERIOPHAGE R17 *AUTHOR P.N.BORER,Y.LIN,S.WANG,M.W.ROGGENBUCK,J.M.GOTT, *AUTHOR 2 O.C.UHLENBECK,I.PELCZER *REVDAT 1 03-JUN-95 1RHT 0 ; save_