data_wwPDB_remediated_restraints_file_for_PDB_entry_1tor # This wwPDB archive file contains, for PDB entry 1tor: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389–396. save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_1tor _Entry.Title "wwPDB remediated NMR restraints for PDB entry 1tor" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 1tor" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_1tor _Assembly.ID 1 _Assembly.Name 1tor _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "not present" _Assembly.Molecular_mass 1120.2268 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 "ACETYLCHOLINE RECEPTOR MAIN IMMUNOGENIC REGION" 1 $ACETYLCHOLINE_RECEPTOR__MAIN_IMMUNOGENIC_REGION A . no . . . . . . rr_1tor 1 stop_ save_ save_ACETYLCHOLINE_RECEPTOR__MAIN_IMMUNOGENIC_REGION _Entity.Sf_category entity _Entity.Sf_framecode ACETYLCHOLINE_RECEPTOR__MAIN_IMMUNOGENIC_REGION _Entity.Entry_ID rr_1tor _Entity.ID 1 _Entity.Name ACETYLCHOLINE_RECEPTOR__MAIN_IMMUNOGENIC_REGION _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code WNPADYGGIK _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 10 _Entity.Paramagnetic no _Entity.Thiol_state "not present" _Entity.Parent_entity_ID 1 _Entity.Formula_weight 1120.2268 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . TRP . rr_1tor 1 2 . ASN . rr_1tor 1 3 . PRO . rr_1tor 1 4 . ALA . rr_1tor 1 5 . ASP . rr_1tor 1 6 . TYR . rr_1tor 1 7 . GLY . rr_1tor 1 8 . GLY . rr_1tor 1 9 . ILE . rr_1tor 1 10 . LYS . rr_1tor 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . TRP 1 1 rr_1tor 1 . ASN 2 2 rr_1tor 1 . PRO 3 3 rr_1tor 1 . ALA 4 4 rr_1tor 1 . ASP 5 5 rr_1tor 1 . TYR 6 6 rr_1tor 1 . GLY 7 7 rr_1tor 1 . GLY 8 8 rr_1tor 1 . ILE 9 9 rr_1tor 1 . LYS 10 10 rr_1tor 1 stop_ save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_1tor _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 5 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_1tor _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 1tor.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_1tor 1 1 1tor.mr . . unknown 2 distance NOE simple 0 rr_1tor 1 1 1tor.mr . . n/a 3 comment "Not applicable" "Not applicable" 0 rr_1tor 1 1 1tor.mr . . "MR format" 4 "nomenclature mapping" "Not applicable" "Not applicable" 0 rr_1tor 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_1tor _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER TRANSMEMBRANE PROTEIN 11-OCT-95 1TOR *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: ACETYLCHOLINE RECEPTOR, MAIN IMMUNOGENIC REGION; *COMPND 3 CHAIN: NULL; *COMPND 4 SYNONYM: MIR *SOURCE MOL_ID: 1; *SOURCE 2 SYNTHETIC: YES; *SOURCE 3 ORGANISM_SCIENTIFIC: TORPEDO CALIFORNICA; *SOURCE 4 ORGANISM_COMMON: PACIFIC ELECTRIC RAY *EXPDTA NMR, 5 STRUCTURES *AUTHOR P.ORLEWSKI,V.TSIKARIS,C.SAKARELLOS,M.SAKARELLOS-DAISTIOTIS, *AUTHOR 2 E.VATZAKI,S.J.TZARTOS,M.MARRAUD,M.T.CUNG *REVDAT 1 08-MAR-96 1TOR 0 JRNL AUTH P.ORLEWSKI,V.TSIKARIS,C.SAKARELLOS,M.SAKARELLOS- JNRL AUTH2 -DAITSIOTIS,E.VATZAKI,S.J.TZARTOS,M.MARRAUD,M.T.CUNG JRNL TITL MOLECULAR DYNAMICS SIMULATION FROM 2D-NMR DATA OF JRNL TITL 2 THE FREE AChR MIR DECAPEPTIDE AND JRNL TITL 3 THE ANTIBODY-BOUND [A76]MIR ANALOGUE JRNL REF BIOCHEMISTRY V. ? ??? 199? JRNL REFN ASTM BICHAW US ISSN 0006-2960 ??? REMARK REMARK THIS FILE CONTAINS DATA THAT WAS USED IN THE DETERMINATION REMARK OF THE THREE-DIMENSIONAL STRUCTURE BY NUCLEAR REMARK MAGNETIC RESONANCE IN SOLUTION AND DISTANCE GEOMETRY AND REMARK RESTRAINED MOLECULAR DYNAMICS (IN DMSO BOX) COMPUTATIONS. REMARK REMARK THE FOLLOWING IS A LIST OF DISTANCE RESTRAINTS. REMARK PSEUDOATOMS ARE DENOTED AS QB,QG,QD. THE VALUES CORRESPOND REMARK TO THE LOWER/UPPER DISTANCES. ; save_ save_MR_file_comment_3 _Org_constr_file_comment.Sf_framecode MR_file_comment_3 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_1tor _Org_constr_file_comment.ID 2 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 3 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; REMARK THE FOLLOWING IS A LIST OF ALL HYDROGEN ATOMS WITH THEIR REMARK NAMES IN THE ENTRY AND THE ORIGINAL DATA: ; save_