data_1VTV
# 
_entry.id   1VTV 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.383 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   1VTV         pdb_00001vtv 10.2210/pdb1vtv/pdb 
NDB   ZDFB03       ?            ?                   
RCSB  RCSB003052   ?            ?                   
WWPDB D_1000003052 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2011-07-13 
2 'Structure model' 1 1 2023-12-27 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Data collection'      
2 2 'Structure model' 'Database references'  
3 2 'Structure model' 'Derived calculations' 
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 2 'Structure model' chem_comp_atom 
2 2 'Structure model' chem_comp_bond 
3 2 'Structure model' database_2     
4 2 'Structure model' struct_conn    
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 2 'Structure model' '_database_2.pdbx_DOI'                
2 2 'Structure model' '_database_2.pdbx_database_accession' 
3 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        1VTV 
_pdbx_database_status.recvd_initial_deposition_date   1989-01-10 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.status_code_sf                  ? 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Fujii, S.'           1 
'Wang, A.H.-J.'       2 
'Van Der Marel, G.A.' 3 
'Van Boom, J.H.'      4 
'Rich, A.'            5 
# 
_citation.id                        primary 
_citation.title                     
'Molecular Structure of (m5dC-dG)3: The Role of the Methyl Group on 5-Methyl Cytosine in Stabilizing Z-DNA' 
_citation.journal_abbrev            'Nucleic Acids Res.' 
_citation.journal_volume            10 
_citation.page_first                7879 
_citation.page_last                 7892 
_citation.year                      1982 
_citation.journal_id_ASTM           NARHAD 
_citation.country                   UK 
_citation.journal_id_ISSN           0305-1048 
_citation.journal_id_CSD            0389 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   7155900 
_citation.pdbx_database_id_DOI      ? 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Fujii, S.'           1 ? 
primary 'Wang, A.H.-J.'       2 ? 
primary 'Van Der Marel, G.A.' 3 ? 
primary 'Van Boom, J.H.'      4 ? 
primary 'Rich, A.'            5 ? 
# 
_entity.id                         1 
_entity.type                       polymer 
_entity.src_method                 syn 
_entity.pdbx_description           
;DNA (5'-D(*(CH3)CP*GP*(CH3)CP*GP*(CH3)CP*G)-3')
;
_entity.formula_weight             1852.286 
_entity.pdbx_number_of_molecules   2 
_entity.pdbx_ec                    ? 
_entity.pdbx_mutation              ? 
_entity.pdbx_fragment              ? 
_entity.details                    ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   yes 
_entity_poly.pdbx_seq_one_letter_code       '(5CM)(DG)(5CM)(DG)(5CM)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CGCGCG 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1 5CM n 
1 2 DG  n 
1 3 5CM n 
1 4 DG  n 
1 5 5CM n 
1 6 DG  n 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE"          ? 'C10 H14 N5 O7 P' 347.221 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1 5CM 1 1  1  5CM 5CM A . n 
A 1 2 DG  2 2  2  DG  DG  A . n 
A 1 3 5CM 3 3  3  5CM 5CM A . n 
A 1 4 DG  4 4  4  DG  DG  A . n 
A 1 5 5CM 5 5  5  5CM 5CM A . n 
A 1 6 DG  6 6  6  DG  DG  A . n 
B 1 1 5CM 1 7  7  5CM 5CM B . n 
B 1 2 DG  2 8  8  DG  DG  B . n 
B 1 3 5CM 3 9  9  5CM 5CM B . n 
B 1 4 DG  4 10 10 DG  DG  B . n 
B 1 5 5CM 5 11 11 5CM 5CM B . n 
B 1 6 DG  6 12 12 DG  DG  B . n 
# 
_software.name             NUCLSQ 
_software.classification   refinement 
_software.version          . 
_software.citation_id      ? 
_software.pdbx_ordinal     1 
# 
_cell.entry_id           1VTV 
_cell.length_a           17.760 
_cell.length_b           30.570 
_cell.length_c           45.420 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
_cell.length_a_esd       ? 
_cell.length_b_esd       ? 
_cell.length_c_esd       ? 
_cell.angle_alpha_esd    ? 
_cell.angle_beta_esd     ? 
_cell.angle_gamma_esd    ? 
# 
_symmetry.entry_id                         1VTV 
_symmetry.space_group_name_H-M             'P 21 21 21' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                19 
_symmetry.space_group_name_Hall            ? 
# 
_exptl.entry_id          1VTV 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   ? 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_percent_sol   26.09 
_exptl_crystal.density_Matthews      1.66 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, SITTING DROP' 
_exptl_crystal_grow.temp            ? 
_exptl_crystal_grow.temp_details    'ROOM TEMPERATURE' 
_exptl_crystal_grow.pH              ? 
_exptl_crystal_grow.pdbx_details    'VAPOR DIFFUSION, SITTING DROP' 
_exptl_crystal_grow.pdbx_pH_range   ? 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1 1 WATER           1  2  3  
1 2 1 MPD             4  5  6  
1 3 1 'NA CACODYLATE' 7  8  9  
1 4 1 SPERMINE_HCL    10 11 12 
1 5 1 MGCL2           13 14 15 
1 6 2 WATER           16 17 18 
1 7 2 MPD             19 20 21 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           265.00 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               DIFFRACTOMETER 
_diffrn_detector.type                   'NICOLET P3' 
_diffrn_detector.pdbx_collection_date   ? 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   . 
_diffrn_radiation_wavelength.wt           1.0 
# 
_reflns.entry_id                     1VTV 
_reflns.observed_criterion_sigma_I   1.500 
_reflns.observed_criterion_sigma_F   ? 
_reflns.d_resolution_low             ? 
_reflns.d_resolution_high            1.300 
_reflns.number_obs                   4208 
_reflns.number_all                   ? 
_reflns.percent_possible_obs         ? 
_reflns.pdbx_Rmerge_I_obs            ? 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              ? 
_reflns.R_free_details               ? 
_reflns.pdbx_ordinal                 1 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
# 
_refine.entry_id                                 1VTV 
_refine.ls_number_reflns_obs                     4208 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_sigma_I                          1.500 
_refine.pdbx_ls_sigma_F                          ? 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             ? 
_refine.ls_d_res_high                            1.300 
_refine.ls_percent_reflns_obs                    ? 
_refine.ls_R_factor_obs                          0.1560000 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       ? 
_refine.ls_R_factor_R_free                       ? 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 ? 
_refine.ls_number_reflns_R_free                  ? 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_ls_cross_valid_method               ? 
_refine.details                                  ? 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_method_to_determine_struct          ? 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       ? 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.overall_SU_B                             ? 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_overall_phase_error                 ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   246 
_refine_hist.pdbx_number_atoms_ligand         0 
_refine_hist.number_atoms_solvent             0 
_refine_hist.number_atoms_total               246 
_refine_hist.d_res_high                       1.300 
_refine_hist.d_res_low                        . 
# 
_database_PDB_matrix.entry_id          1VTV 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  1VTV 
_struct.title                     
'Molecular structure of (M5DC-DG)3: The role of the methyl group on 5-methyl cytosine in stabilizing Z-DNA' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        1VTV 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'Z-DNA, DOUBLE HELIX, MODIFIED, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
# 
_struct_ref.id                         1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    1VTV 
_struct_ref.pdbx_db_accession          1VTV 
_struct_ref.entity_id                  1 
_struct_ref.pdbx_align_begin           ? 
_struct_ref.pdbx_seq_one_letter_code   CGCGCG 
_struct_ref.pdbx_db_isoform            ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 1VTV A 1 ? 6 ? 1VTV 1 ? 6  ? 1 6  
2 1 1VTV B 1 ? 6 ? 1VTV 7 ? 12 ? 7 12 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_struct_biol.id                    1 
_struct_biol.pdbx_parent_biol_id   ? 
_struct_biol.details               ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
covale1  covale both ? A 5CM 1 "O3'" ? ? ? 1_555 A DG  2 P  ? ? A 5CM 1  A DG  2  1_555 ? ? ? ? ? ? ?            1.578 ? ? 
covale2  covale both ? A DG  2 "O3'" ? ? ? 1_555 A 5CM 3 P  A ? A DG  2  A 5CM 3  1_555 ? ? ? ? ? ? ?            1.577 ? ? 
covale3  covale both ? A DG  2 "O3'" ? ? ? 1_555 A 5CM 3 P  B ? A DG  2  A 5CM 3  1_555 ? ? ? ? ? ? ?            1.529 ? ? 
covale4  covale both ? A 5CM 3 "O3'" ? ? ? 1_555 A DG  4 P  ? ? A 5CM 3  A DG  4  1_555 ? ? ? ? ? ? ?            1.611 ? ? 
covale5  covale both ? A DG  4 "O3'" ? ? ? 1_555 A 5CM 5 P  A ? A DG  4  A 5CM 5  1_555 ? ? ? ? ? ? ?            1.574 ? ? 
covale6  covale both ? A DG  4 "O3'" ? ? ? 1_555 A 5CM 5 P  B ? A DG  4  A 5CM 5  1_555 ? ? ? ? ? ? ?            1.584 ? ? 
covale7  covale both ? A 5CM 5 "O3'" ? ? ? 1_555 A DG  6 P  ? ? A 5CM 5  A DG  6  1_555 ? ? ? ? ? ? ?            1.579 ? ? 
covale8  covale both ? B 5CM 1 "O3'" ? ? ? 1_555 B DG  2 P  ? ? B 5CM 7  B DG  8  1_555 ? ? ? ? ? ? ?            1.595 ? ? 
covale9  covale both ? B DG  2 "O3'" ? ? ? 1_555 B 5CM 3 P  ? ? B DG  8  B 5CM 9  1_555 ? ? ? ? ? ? ?            1.578 ? ? 
covale10 covale both ? B 5CM 3 "O3'" ? ? ? 1_555 B DG  4 P  ? ? B 5CM 9  B DG  10 1_555 ? ? ? ? ? ? ?            1.575 ? ? 
covale11 covale both ? B DG  4 "O3'" ? ? ? 1_555 B 5CM 5 P  ? ? B DG  10 B 5CM 11 1_555 ? ? ? ? ? ? ?            1.596 ? ? 
covale12 covale both ? B 5CM 5 "O3'" ? ? ? 1_555 B DG  6 P  ? ? B 5CM 11 B DG  12 1_555 ? ? ? ? ? ? ?            1.591 ? ? 
hydrog1  hydrog ?    ? A 5CM 1 N3    ? ? ? 1_555 B DG  6 N1 ? ? A 5CM 1  B DG  12 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ?    ? A 5CM 1 N4    ? ? ? 1_555 B DG  6 O6 ? ? A 5CM 1  B DG  12 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ?    ? A 5CM 1 O2    ? ? ? 1_555 B DG  6 N2 ? ? A 5CM 1  B DG  12 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ?    ? A DG  2 N1    ? ? ? 1_555 B 5CM 5 N3 ? ? A DG  2  B 5CM 11 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ?    ? A DG  2 N2    ? ? ? 1_555 B 5CM 5 O2 ? ? A DG  2  B 5CM 11 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ?    ? A DG  2 O6    ? ? ? 1_555 B 5CM 5 N4 ? ? A DG  2  B 5CM 11 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ?    ? A 5CM 3 N3    ? ? ? 1_555 B DG  4 N1 ? ? A 5CM 3  B DG  10 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ?    ? A 5CM 3 N4    ? ? ? 1_555 B DG  4 O6 ? ? A 5CM 3  B DG  10 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ?    ? A 5CM 3 O2    ? ? ? 1_555 B DG  4 N2 ? ? A 5CM 3  B DG  10 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ?    ? A DG  4 N1    ? ? ? 1_555 B 5CM 3 N3 ? ? A DG  4  B 5CM 9  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ?    ? A DG  4 N2    ? ? ? 1_555 B 5CM 3 O2 ? ? A DG  4  B 5CM 9  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ?    ? A DG  4 O6    ? ? ? 1_555 B 5CM 3 N4 ? ? A DG  4  B 5CM 9  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ?    ? A 5CM 5 N3    ? ? ? 1_555 B DG  2 N1 ? ? A 5CM 5  B DG  8  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ?    ? A 5CM 5 N4    ? ? ? 1_555 B DG  2 O6 ? ? A 5CM 5  B DG  8  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ?    ? A 5CM 5 O2    ? ? ? 1_555 B DG  2 N2 ? ? A 5CM 5  B DG  8  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ?    ? A DG  6 N1    ? ? ? 1_555 B 5CM 1 N3 ? ? A DG  6  B 5CM 7  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ?    ? A DG  6 N2    ? ? ? 1_555 B 5CM 1 O2 ? ? A DG  6  B 5CM 7  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ?    ? A DG  6 O6    ? ? ? 1_555 B 5CM 1 N4 ? ? A DG  6  B 5CM 7  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
covale ? ? 
hydrog ? ? 
# 
loop_
_pdbx_validate_rmsd_bond.id 
_pdbx_validate_rmsd_bond.PDB_model_num 
_pdbx_validate_rmsd_bond.auth_atom_id_1 
_pdbx_validate_rmsd_bond.auth_asym_id_1 
_pdbx_validate_rmsd_bond.auth_comp_id_1 
_pdbx_validate_rmsd_bond.auth_seq_id_1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1 
_pdbx_validate_rmsd_bond.label_alt_id_1 
_pdbx_validate_rmsd_bond.auth_atom_id_2 
_pdbx_validate_rmsd_bond.auth_asym_id_2 
_pdbx_validate_rmsd_bond.auth_comp_id_2 
_pdbx_validate_rmsd_bond.auth_seq_id_2 
_pdbx_validate_rmsd_bond.PDB_ins_code_2 
_pdbx_validate_rmsd_bond.label_alt_id_2 
_pdbx_validate_rmsd_bond.bond_value 
_pdbx_validate_rmsd_bond.bond_target_value 
_pdbx_validate_rmsd_bond.bond_deviation 
_pdbx_validate_rmsd_bond.bond_standard_deviation 
_pdbx_validate_rmsd_bond.linker_flag 
1  1 C6    A DG 2  ? ? N1    A DG  2  ? ? 1.346 1.391 -0.045 0.007 N 
2  1 C2    A DG 2  ? ? N2    A DG  2  ? ? 1.239 1.341 -0.102 0.010 N 
3  1 "O3'" A DG 2  ? ? P     A 5CM 3  ? B 1.529 1.607 -0.078 0.012 Y 
4  1 C6    A DG 4  ? ? N1    A DG  4  ? ? 1.341 1.391 -0.050 0.007 N 
5  1 C8    A DG 4  ? ? N9    A DG  4  ? ? 1.317 1.374 -0.057 0.007 N 
6  1 C2    A DG 4  ? ? N2    A DG  4  ? ? 1.250 1.341 -0.091 0.010 N 
7  1 "C3'" A DG 6  ? ? "C2'" A DG  6  ? ? 1.467 1.516 -0.049 0.008 N 
8  1 C2    A DG 6  ? ? N2    A DG  6  ? ? 1.255 1.341 -0.086 0.010 N 
9  1 C6    B DG 8  ? ? N1    B DG  8  ? ? 1.332 1.391 -0.059 0.007 N 
10 1 C2    B DG 8  ? ? N2    B DG  8  ? ? 1.249 1.341 -0.092 0.010 N 
11 1 N3    B DG 10 ? ? C4    B DG  10 ? ? 1.694 1.350 0.344  0.007 N 
12 1 C4    B DG 10 ? ? C5    B DG  10 ? ? 1.306 1.379 -0.073 0.007 N 
13 1 C6    B DG 10 ? ? N1    B DG  10 ? ? 1.342 1.391 -0.049 0.007 N 
14 1 C5    B DG 10 ? ? N7    B DG  10 ? ? 1.329 1.388 -0.059 0.006 N 
15 1 C8    B DG 10 ? ? N9    B DG  10 ? ? 1.328 1.374 -0.046 0.007 N 
16 1 N9    B DG 10 ? ? C4    B DG  10 ? ? 1.095 1.375 -0.280 0.008 N 
17 1 C2    B DG 10 ? ? N2    B DG  10 ? ? 1.236 1.341 -0.105 0.010 N 
18 1 N1    B DG 12 ? ? C2    B DG  12 ? ? 1.232 1.373 -0.141 0.008 N 
19 1 C6    B DG 12 ? ? N1    B DG  12 ? ? 1.459 1.391 0.068  0.007 N 
20 1 C8    B DG 12 ? ? N9    B DG  12 ? ? 1.327 1.374 -0.047 0.007 N 
21 1 C2    B DG 12 ? ? N2    B DG  12 ? ? 1.241 1.341 -0.100 0.010 N 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 OP1   A DG 2  ? ? P     A DG 2  ? ? OP2   A DG 2  ? ? 128.90 119.60 9.30   1.50 N 
2  1 "O5'" A DG 2  ? ? "C5'" A DG 2  ? ? "C4'" A DG 2  ? ? 103.59 109.40 -5.81  0.80 N 
3  1 C6    A DG 2  ? ? N1    A DG 2  ? ? C2    A DG 2  ? ? 118.97 125.10 -6.13  0.60 N 
4  1 N1    A DG 2  ? ? C2    A DG 2  ? ? N3    A DG 2  ? ? 127.80 123.90 3.90   0.60 N 
5  1 C5    A DG 2  ? ? C6    A DG 2  ? ? N1    A DG 2  ? ? 118.07 111.50 6.57   0.50 N 
6  1 C4    A DG 2  ? ? C5    A DG 2  ? ? N7    A DG 2  ? ? 113.93 110.80 3.13   0.40 N 
7  1 C5    A DG 2  ? ? N7    A DG 2  ? ? C8    A DG 2  ? ? 100.90 104.30 -3.40  0.50 N 
8  1 N3    A DG 2  ? ? C2    A DG 2  ? ? N2    A DG 2  ? ? 113.90 119.90 -6.00  0.70 N 
9  1 C5    A DG 2  ? ? C6    A DG 2  ? ? O6    A DG 2  ? ? 122.77 128.60 -5.83  0.60 N 
10 1 OP1   A DG 4  ? ? P     A DG 4  ? ? OP2   A DG 4  ? ? 132.79 119.60 13.19  1.50 N 
11 1 "O5'" A DG 4  ? ? "C5'" A DG 4  ? ? "C4'" A DG 4  ? ? 104.32 109.40 -5.08  0.80 N 
12 1 C6    A DG 4  ? ? N1    A DG 4  ? ? C2    A DG 4  ? ? 120.06 125.10 -5.04  0.60 N 
13 1 N1    A DG 4  ? ? C2    A DG 4  ? ? N3    A DG 4  ? ? 127.82 123.90 3.92   0.60 N 
14 1 C5    A DG 4  ? ? C6    A DG 4  ? ? N1    A DG 4  ? ? 117.45 111.50 5.95   0.50 N 
15 1 N3    A DG 4  ? ? C2    A DG 4  ? ? N2    A DG 4  ? ? 112.08 119.90 -7.82  0.70 N 
16 1 C5    A DG 4  ? ? C6    A DG 4  ? ? O6    A DG 4  ? ? 124.72 128.60 -3.88  0.60 N 
17 1 C6    A DG 6  ? ? N1    A DG 6  ? ? C2    A DG 6  ? ? 119.27 125.10 -5.83  0.60 N 
18 1 N1    A DG 6  ? ? C2    A DG 6  ? ? N3    A DG 6  ? ? 129.41 123.90 5.51   0.60 N 
19 1 C5    A DG 6  ? ? C6    A DG 6  ? ? N1    A DG 6  ? ? 116.73 111.50 5.23   0.50 N 
20 1 N3    A DG 6  ? ? C2    A DG 6  ? ? N2    A DG 6  ? ? 111.61 119.90 -8.29  0.70 N 
21 1 "O5'" B DG 8  ? ? "C5'" B DG 8  ? ? "C4'" B DG 8  ? ? 101.20 109.40 -8.20  0.80 N 
22 1 P     B DG 8  ? ? "O5'" B DG 8  ? ? "C5'" B DG 8  ? ? 109.93 120.90 -10.97 1.60 N 
23 1 C5    B DG 8  ? ? C6    B DG 8  ? ? N1    B DG 8  ? ? 116.55 111.50 5.05   0.50 N 
24 1 N3    B DG 8  ? ? C2    B DG 8  ? ? N2    B DG 8  ? ? 113.70 119.90 -6.20  0.70 N 
25 1 C5    B DG 8  ? ? C6    B DG 8  ? ? O6    B DG 8  ? ? 123.74 128.60 -4.86  0.60 N 
26 1 C6    B DG 10 ? ? N1    B DG 10 ? ? C2    B DG 10 ? ? 120.49 125.10 -4.61  0.60 N 
27 1 N1    B DG 10 ? ? C2    B DG 10 ? ? N3    B DG 10 ? ? 127.68 123.90 3.78   0.60 N 
28 1 N3    B DG 10 ? ? C4    B DG 10 ? ? C5    B DG 10 ? ? 108.28 128.60 -20.32 0.50 N 
29 1 C4    B DG 10 ? ? C5    B DG 10 ? ? C6    B DG 10 ? ? 131.82 118.80 13.02  0.60 N 
30 1 C5    B DG 10 ? ? C6    B DG 10 ? ? N1    B DG 10 ? ? 116.93 111.50 5.43   0.50 N 
31 1 C4    B DG 10 ? ? C5    B DG 10 ? ? N7    B DG 10 ? ? 97.68  110.80 -13.12 0.40 N 
32 1 C8    B DG 10 ? ? N9    B DG 10 ? ? C4    B DG 10 ? ? 95.77  106.40 -10.63 0.40 N 
33 1 N9    B DG 10 ? ? C4    B DG 10 ? ? C5    B DG 10 ? ? 129.40 105.40 24.00  0.40 N 
34 1 N3    B DG 10 ? ? C4    B DG 10 ? ? N9    B DG 10 ? ? 122.31 126.00 -3.69  0.60 N 
35 1 N3    B DG 10 ? ? C2    B DG 10 ? ? N2    B DG 10 ? ? 111.48 119.90 -8.42  0.70 N 
36 1 C4    B DG 10 ? ? N9    B DG 10 ? ? "C1'" B DG 10 ? ? 138.02 126.50 11.52  1.30 N 
37 1 P     B DG 12 ? ? "O5'" B DG 12 ? ? "C5'" B DG 12 ? ? 110.96 120.90 -9.94  1.60 N 
38 1 C6    B DG 12 ? ? N1    B DG 12 ? ? C2    B DG 12 ? ? 119.59 125.10 -5.51  0.60 N 
39 1 N1    B DG 12 ? ? C2    B DG 12 ? ? N3    B DG 12 ? ? 131.39 123.90 7.49   0.60 N 
40 1 N3    B DG 12 ? ? C2    B DG 12 ? ? N2    B DG 12 ? ? 112.51 119.90 -7.39  0.70 N 
41 1 C5    B DG 12 ? ? C6    B DG 12 ? ? O6    B DG 12 ? ? 123.27 128.60 -5.33  0.60 N 
# 
loop_
_pdbx_struct_mod_residue.id 
_pdbx_struct_mod_residue.label_asym_id 
_pdbx_struct_mod_residue.label_comp_id 
_pdbx_struct_mod_residue.label_seq_id 
_pdbx_struct_mod_residue.auth_asym_id 
_pdbx_struct_mod_residue.auth_comp_id 
_pdbx_struct_mod_residue.auth_seq_id 
_pdbx_struct_mod_residue.PDB_ins_code 
_pdbx_struct_mod_residue.parent_comp_id 
_pdbx_struct_mod_residue.details 
1 A 5CM 1 A 5CM 1  ? DC ? 
2 A 5CM 3 A 5CM 3  ? DC ? 
3 A 5CM 5 A 5CM 5  ? DC ? 
4 B 5CM 1 B 5CM 7  ? DC ? 
5 B 5CM 3 B 5CM 9  ? DC ? 
6 B 5CM 5 B 5CM 11 ? DC ? 
# 
loop_
_refine_B_iso.class 
_refine_B_iso.details 
_refine_B_iso.treatment 
_refine_B_iso.pdbx_refine_id 
'ALL ATOMS'  TR isotropic 'X-RAY DIFFRACTION' 
'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' 
# 
loop_
_refine_occupancy.class 
_refine_occupancy.treatment 
_refine_occupancy.pdbx_refine_id 
'ALL ATOMS'  fix 'X-RAY DIFFRACTION' 
'ALL WATERS' fix 'X-RAY DIFFRACTION' 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
5CM N1     N N N 1  
5CM C2     C N N 2  
5CM N3     N N N 3  
5CM C4     C N N 4  
5CM C5     C N N 5  
5CM C5A    C N N 6  
5CM C6     C N N 7  
5CM O2     O N N 8  
5CM N4     N N N 9  
5CM "C1'"  C N R 10 
5CM "C2'"  C N N 11 
5CM "C3'"  C N S 12 
5CM "C4'"  C N R 13 
5CM "O4'"  O N N 14 
5CM "O3'"  O N N 15 
5CM "C5'"  C N N 16 
5CM "O5'"  O N N 17 
5CM P      P N N 18 
5CM OP1    O N N 19 
5CM OP2    O N N 20 
5CM OP3    O N N 21 
5CM H5A1   H N N 22 
5CM H5A2   H N N 23 
5CM H5A3   H N N 24 
5CM H6     H N N 25 
5CM HN41   H N N 26 
5CM HN42   H N N 27 
5CM "H1'"  H N N 28 
5CM "H2'"  H N N 29 
5CM "H2''" H N N 30 
5CM "H3'"  H N N 31 
5CM "H4'"  H N N 32 
5CM "HO3'" H N N 33 
5CM "H5'"  H N N 34 
5CM "H5''" H N N 35 
5CM HOP2   H N N 36 
5CM HOP3   H N N 37 
DG  OP3    O N N 38 
DG  P      P N N 39 
DG  OP1    O N N 40 
DG  OP2    O N N 41 
DG  "O5'"  O N N 42 
DG  "C5'"  C N N 43 
DG  "C4'"  C N R 44 
DG  "O4'"  O N N 45 
DG  "C3'"  C N S 46 
DG  "O3'"  O N N 47 
DG  "C2'"  C N N 48 
DG  "C1'"  C N R 49 
DG  N9     N Y N 50 
DG  C8     C Y N 51 
DG  N7     N Y N 52 
DG  C5     C Y N 53 
DG  C6     C N N 54 
DG  O6     O N N 55 
DG  N1     N N N 56 
DG  C2     C N N 57 
DG  N2     N N N 58 
DG  N3     N N N 59 
DG  C4     C Y N 60 
DG  HOP3   H N N 61 
DG  HOP2   H N N 62 
DG  "H5'"  H N N 63 
DG  "H5''" H N N 64 
DG  "H4'"  H N N 65 
DG  "H3'"  H N N 66 
DG  "HO3'" H N N 67 
DG  "H2'"  H N N 68 
DG  "H2''" H N N 69 
DG  "H1'"  H N N 70 
DG  H8     H N N 71 
DG  H1     H N N 72 
DG  H21    H N N 73 
DG  H22    H N N 74 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5CM N1    C2     sing N N 1  
5CM N1    C6     sing N N 2  
5CM N1    "C1'"  sing N N 3  
5CM C2    N3     sing N N 4  
5CM C2    O2     doub N N 5  
5CM N3    C4     doub N N 6  
5CM C4    C5     sing N N 7  
5CM C4    N4     sing N N 8  
5CM C5    C5A    sing N N 9  
5CM C5    C6     doub N N 10 
5CM C5A   H5A1   sing N N 11 
5CM C5A   H5A2   sing N N 12 
5CM C5A   H5A3   sing N N 13 
5CM C6    H6     sing N N 14 
5CM N4    HN41   sing N N 15 
5CM N4    HN42   sing N N 16 
5CM "C1'" "C2'"  sing N N 17 
5CM "C1'" "O4'"  sing N N 18 
5CM "C1'" "H1'"  sing N N 19 
5CM "C2'" "C3'"  sing N N 20 
5CM "C2'" "H2'"  sing N N 21 
5CM "C2'" "H2''" sing N N 22 
5CM "C3'" "C4'"  sing N N 23 
5CM "C3'" "O3'"  sing N N 24 
5CM "C3'" "H3'"  sing N N 25 
5CM "C4'" "O4'"  sing N N 26 
5CM "C4'" "C5'"  sing N N 27 
5CM "C4'" "H4'"  sing N N 28 
5CM "O3'" "HO3'" sing N N 29 
5CM "C5'" "O5'"  sing N N 30 
5CM "C5'" "H5'"  sing N N 31 
5CM "C5'" "H5''" sing N N 32 
5CM "O5'" P      sing N N 33 
5CM P     OP1    doub N N 34 
5CM P     OP2    sing N N 35 
5CM P     OP3    sing N N 36 
5CM OP2   HOP2   sing N N 37 
5CM OP3   HOP3   sing N N 38 
DG  OP3   P      sing N N 39 
DG  OP3   HOP3   sing N N 40 
DG  P     OP1    doub N N 41 
DG  P     OP2    sing N N 42 
DG  P     "O5'"  sing N N 43 
DG  OP2   HOP2   sing N N 44 
DG  "O5'" "C5'"  sing N N 45 
DG  "C5'" "C4'"  sing N N 46 
DG  "C5'" "H5'"  sing N N 47 
DG  "C5'" "H5''" sing N N 48 
DG  "C4'" "O4'"  sing N N 49 
DG  "C4'" "C3'"  sing N N 50 
DG  "C4'" "H4'"  sing N N 51 
DG  "O4'" "C1'"  sing N N 52 
DG  "C3'" "O3'"  sing N N 53 
DG  "C3'" "C2'"  sing N N 54 
DG  "C3'" "H3'"  sing N N 55 
DG  "O3'" "HO3'" sing N N 56 
DG  "C2'" "C1'"  sing N N 57 
DG  "C2'" "H2'"  sing N N 58 
DG  "C2'" "H2''" sing N N 59 
DG  "C1'" N9     sing N N 60 
DG  "C1'" "H1'"  sing N N 61 
DG  N9    C8     sing Y N 62 
DG  N9    C4     sing Y N 63 
DG  C8    N7     doub Y N 64 
DG  C8    H8     sing N N 65 
DG  N7    C5     sing Y N 66 
DG  C5    C6     sing N N 67 
DG  C5    C4     doub Y N 68 
DG  C6    O6     doub N N 69 
DG  C6    N1     sing N N 70 
DG  N1    C2     sing N N 71 
DG  N1    H1     sing N N 72 
DG  C2    N2     sing N N 73 
DG  C2    N3     doub N N 74 
DG  N2    H21    sing N N 75 
DG  N2    H22    sing N N 76 
DG  N3    C4     sing N N 77 
# 
_ndb_struct_conf_na.entry_id   1VTV 
_ndb_struct_conf_na.feature    'z-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A 5CM 1 1_555 B DG  6 1_555 -0.316 -0.162 0.033  8.724  -0.676 1.506  1 A_5CM1:DG12_B A 1 ? B 12 ? 19 1 
1 A DG  2 1_555 B 5CM 5 1_555 0.308  -0.163 0.289  -7.871 -0.003 1.457  2 A_DG2:5CM11_B A 2 ? B 11 ? 19 1 
1 A 5CM 3 1_555 B DG  4 1_555 -0.269 -0.136 -0.067 3.456  -6.266 -0.566 3 A_5CM3:DG10_B A 3 ? B 10 ? 19 1 
1 A DG  4 1_555 B 5CM 3 1_555 0.142  -0.118 -0.080 -7.173 -0.247 2.062  4 A_DG4:5CM9_B  A 4 ? B 9  ? 19 1 
1 A 5CM 5 1_555 B DG  2 1_555 -0.238 -0.141 -0.010 7.506  -2.561 1.267  5 A_5CM5:DG8_B  A 5 ? B 8  ? 19 1 
1 A DG  6 1_555 B 5CM 1 1_555 0.283  -0.166 0.086  -5.409 0.243  1.192  6 A_DG6:5CM7_B  A 6 ? B 7  ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A 5CM 1 1_555 B DG  6 1_555 A DG  2 1_555 B 5CM 5 1_555 -0.147 5.710  4.081 -0.491 -0.042 -10.947 -29.819 -1.725 4.092 0.221  
-2.574 -10.958 1 AA_5CM1DG2:5CM11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 
1 A DG  2 1_555 B 5CM 5 1_555 A 5CM 3 1_555 B DG  4 1_555 -0.134 -1.063 3.348 3.093  -3.941 -46.664 1.665   0.090  3.255 4.958  
3.891  -46.917 2 AA_DG25CM3:DG105CM11_BB A 2 ? B 11 ? A 3 ? B 10 ? 
1 A 5CM 3 1_555 B DG  4 1_555 A DG  4 1_555 B 5CM 3 1_555 -0.099 5.521  3.688 -0.178 -5.382 -12.098 -15.418 -0.710 5.607 24.038 
-0.795 -13.238 3 AA_5CM3DG4:5CM9DG10_BB  A 3 ? B 10 ? A 4 ? B 9  ? 
1 A DG  4 1_555 B 5CM 3 1_555 A 5CM 5 1_555 B DG  2 1_555 -0.206 -1.015 3.250 -0.060 -3.893 -46.200 1.613   -0.267 3.158 4.951  
-0.077 -46.355 4 AA_DG45CM5:DG85CM9_BB   A 4 ? B 9  ? A 5 ? B 8  ? 
1 A 5CM 5 1_555 B DG  2 1_555 A DG  6 1_555 B 5CM 1 1_555 0.140  5.682  3.875 -0.483 -1.220 -13.413 -22.626 -0.033 4.373 5.205  
-2.060 -13.477 5 AA_5CM5DG6:5CM7DG8_BB   A 5 ? B 8  ? A 6 ? B 7  ? 
# 
_atom_sites.entry_id                    1VTV 
_atom_sites.fract_transf_matrix[1][1]   0.056306 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.032712 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.022017 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
_atom_sites_footnote.id     1 
_atom_sites_footnote.text   'THESE PHOSPHATES ARE DISORDERED.' 
# 
loop_
_atom_type.symbol 
C 
N 
O 
P 
# 
loop_
_atom_site.group_PDB 
_atom_site.id 
_atom_site.type_symbol 
_atom_site.label_atom_id 
_atom_site.label_alt_id 
_atom_site.label_comp_id 
_atom_site.label_asym_id 
_atom_site.label_entity_id 
_atom_site.label_seq_id 
_atom_site.pdbx_PDB_ins_code 
_atom_site.Cartn_x 
_atom_site.Cartn_y 
_atom_site.Cartn_z 
_atom_site.occupancy 
_atom_site.B_iso_or_equiv 
_atom_site.pdbx_formal_charge 
_atom_site.auth_seq_id 
_atom_site.auth_comp_id 
_atom_site.auth_asym_id 
_atom_site.auth_atom_id 
_atom_site.pdbx_PDB_model_num 
HETATM 1   N N1    . 5CM A 1 1 ? 11.301 12.995 -3.248 1.00 10.00 ? 1  5CM A N1    1 
HETATM 2   C C2    . 5CM A 1 1 ? 12.631 13.157 -3.475 1.00 10.00 ? 1  5CM A C2    1 
HETATM 3   N N3    . 5CM A 1 1 ? 13.356 11.986 -3.597 1.00 10.00 ? 1  5CM A N3    1 
HETATM 4   C C4    . 5CM A 1 1 ? 12.803 10.721 -3.484 1.00 10.00 ? 1  5CM A C4    1 
HETATM 5   C C5    . 5CM A 1 1 ? 11.425 10.626 -3.225 1.00 10.00 ? 1  5CM A C5    1 
HETATM 6   C C5A   . 5CM A 1 1 ? 10.771 9.260  -3.089 1.00 10.00 ? 1  5CM A C5A   1 
HETATM 7   C C6    . 5CM A 1 1 ? 10.718 11.745 -3.116 1.00 10.00 ? 1  5CM A C6    1 
HETATM 8   O O2    . 5CM A 1 1 ? 13.199 14.215 -3.602 1.00 10.00 ? 1  5CM A O2    1 
HETATM 9   N N4    . 5CM A 1 1 ? 13.652 9.651  -3.643 1.00 10.00 ? 1  5CM A N4    1 
HETATM 10  C "C1'" . 5CM A 1 1 ? 10.496 14.282 -3.102 1.00 10.00 ? 1  5CM A "C1'" 1 
HETATM 11  C "C2'" . 5CM A 1 1 ? 9.908  14.701 -4.501 1.00 10.00 ? 1  5CM A "C2'" 1 
HETATM 12  C "C3'" . 5CM A 1 1 ? 8.692  15.508 -4.020 1.00 10.00 ? 1  5CM A "C3'" 1 
HETATM 13  C "C4'" . 5CM A 1 1 ? 8.276  14.833 -2.684 1.00 10.00 ? 1  5CM A "C4'" 1 
HETATM 14  O "O4'" . 5CM A 1 1 ? 9.383  14.047 -2.262 1.00 10.00 ? 1  5CM A "O4'" 1 
HETATM 15  O "O3'" . 5CM A 1 1 ? 9.187  16.777 -3.724 1.00 10.00 ? 1  5CM A "O3'" 1 
HETATM 16  C "C5'" . 5CM A 1 1 ? 7.083  13.882 -2.748 1.00 10.00 ? 1  5CM A "C5'" 1 
HETATM 17  O "O5'" . 5CM A 1 1 ? 7.378  12.937 -3.824 1.00 10.00 ? 1  5CM A "O5'" 1 
ATOM   18  P P     . DG  A 1 2 ? 8.388  18.122 -3.929 1.00 10.00 ? 2  DG  A P     1 
ATOM   19  O OP1   . DG  A 1 2 ? 7.559  17.893 -5.110 1.00 10.00 ? 2  DG  A OP1   1 
ATOM   20  O OP2   . DG  A 1 2 ? 9.328  19.122 -3.702 1.00 10.00 ? 2  DG  A OP2   1 
ATOM   21  O "O5'" . DG  A 1 2 ? 7.365  18.272 -2.657 1.00 10.00 ? 2  DG  A "O5'" 1 
ATOM   22  C "C5'" . DG  A 1 2 ? 7.905  18.263 -1.367 1.00 10.00 ? 2  DG  A "C5'" 1 
ATOM   23  C "C4'" . DG  A 1 2 ? 6.672  18.070 -0.459 1.00 10.00 ? 2  DG  A "C4'" 1 
ATOM   24  O "O4'" . DG  A 1 2 ? 6.109  16.786 -0.613 1.00 10.00 ? 2  DG  A "O4'" 1 
ATOM   25  C "C3'" . DG  A 1 2 ? 7.093  18.165 1.031  1.00 10.00 ? 2  DG  A "C3'" 1 
ATOM   26  O "O3'" . DG  A 1 2 ? 6.992  19.571 1.285  1.00 10.00 ? 2  DG  A "O3'" 1 
ATOM   27  C "C2'" . DG  A 1 2 ? 6.166  17.232 1.731  1.00 10.00 ? 2  DG  A "C2'" 1 
ATOM   28  C "C1'" . DG  A 1 2 ? 5.738  16.205 0.663  1.00 10.00 ? 2  DG  A "C1'" 1 
ATOM   29  N N9    . DG  A 1 2 ? 6.353  14.949 0.722  1.00 10.00 ? 2  DG  A N9    1 
ATOM   30  C C8    . DG  A 1 2 ? 5.689  13.790 0.763  1.00 10.00 ? 2  DG  A C8    1 
ATOM   31  N N7    . DG  A 1 2 ? 6.454  12.702 0.831  1.00 10.00 ? 2  DG  A N7    1 
ATOM   32  C C5    . DG  A 1 2 ? 7.706  13.261 0.772  1.00 10.00 ? 2  DG  A C5    1 
ATOM   33  C C6    . DG  A 1 2 ? 8.988  12.638 0.736  1.00 10.00 ? 2  DG  A C6    1 
ATOM   34  O O6    . DG  A 1 2 ? 9.141  11.372 0.754  1.00 10.00 ? 2  DG  A O6    1 
ATOM   35  N N1    . DG  A 1 2 ? 10.075 13.429 0.677  1.00 10.00 ? 2  DG  A N1    1 
ATOM   36  C C2    . DG  A 1 2 ? 9.908  14.765 0.627  1.00 10.00 ? 2  DG  A C2    1 
ATOM   37  N N2    . DG  A 1 2 ? 10.917 15.481 0.559  1.00 10.00 ? 2  DG  A N2    1 
ATOM   38  N N3    . DG  A 1 2 ? 8.761  15.447 0.640  1.00 10.00 ? 2  DG  A N3    1 
ATOM   39  C C4    . DG  A 1 2 ? 7.701  14.625 0.699  1.00 10.00 ? 2  DG  A C4    1 
HETATM 40  N N1    . 5CM A 1 3 ? 10.382 16.110 4.388  1.00 10.00 ? 3  5CM A N1    1 
HETATM 41  C C2    . 5CM A 1 3 ? 11.199 15.034 4.197  1.00 10.00 ? 3  5CM A C2    1 
HETATM 42  N N3    . 5CM A 1 3 ? 10.596 13.821 4.097  1.00 10.00 ? 3  5CM A N3    1 
HETATM 43  C C4    . 5CM A 1 3 ? 9.228  13.646 4.165  1.00 10.00 ? 3  5CM A C4    1 
HETATM 44  C C5    . 5CM A 1 3 ? 8.404  14.793 4.347  1.00 10.00 ? 3  5CM A C5    1 
HETATM 45  C C5A   . 5CM A 1 3 ? 6.900  14.695 4.460  1.00 10.00 ? 3  5CM A C5A   1 
HETATM 46  C C6    . 5CM A 1 3 ? 9.010  15.973 4.433  1.00 10.00 ? 3  5CM A C6    1 
HETATM 47  O O2    . 5CM A 1 3 ? 12.395 15.120 4.120  1.00 10.00 ? 3  5CM A O2    1 
HETATM 48  N N4    . 5CM A 1 3 ? 8.727  12.378 4.056  1.00 10.00 ? 3  5CM A N4    1 
HETATM 49  C "C1'" . 5CM A 1 3 ? 11.034 17.446 4.456  1.00 10.00 ? 3  5CM A "C1'" 1 
HETATM 50  C "C2'" . 5CM A 1 3 ? 11.141 18.061 2.975  1.00 10.00 ? 3  5CM A "C2'" 1 
HETATM 51  C "C3'" . 5CM A 1 3 ? 11.352 19.525 3.407  1.00 10.00 ? 3  5CM A "C3'" 1 
HETATM 52  C "C4'" . 5CM A 1 3 ? 10.406 19.721 4.624  1.00 10.00 ? 3  5CM A "C4'" 1 
HETATM 53  O "O4'" . 5CM A 1 3 ? 10.157 18.333 5.078  1.00 10.00 ? 3  5CM A "O4'" 1 
HETATM 54  O "O3'" . 5CM A 1 3 ? 12.659 19.770 3.815  1.00 10.00 ? 3  5CM A "O3'" 1 
HETATM 55  C "C5'" . 5CM A 1 3 ? 9.065  20.341 4.351  1.00 10.00 ? 3  5CM A "C5'" 1 
HETATM 56  O "O5'" . 5CM A 1 3 ? 8.537  19.681 3.270  1.00 10.00 ? 3  5CM A "O5'" 1 
HETATM 57  P P     A 5CM A 1 3 ? 8.218  20.405 1.821  0.50 10.00 ? 3  5CM A P     1 
HETATM 58  P P     B 5CM A 1 3 ? 7.127  20.161 2.689  0.50 10.00 ? 3  5CM A P     1 
HETATM 59  O OP1   A 5CM A 1 3 ? 7.774  21.680 2.185  0.50 10.00 ? 3  5CM A OP1   1 
HETATM 60  O OP1   B 5CM A 1 3 ? 6.816  21.604 2.589  0.50 10.00 ? 3  5CM A OP1   1 
HETATM 61  O OP2   A 5CM A 1 3 ? 9.363  20.329 0.931  0.50 10.00 ? 3  5CM A OP2   1 
HETATM 62  O OP2   B 5CM A 1 3 ? 6.264  19.326 3.538  0.50 10.00 ? 3  5CM A OP2   1 
ATOM   63  P P     . DG  A 1 4 ? 13.306 21.234 3.629  1.00 10.00 ? 4  DG  A P     1 
ATOM   64  O OP1   . DG  A 1 4 ? 12.729 21.864 2.480  1.00 10.00 ? 4  DG  A OP1   1 
ATOM   65  O OP2   . DG  A 1 4 ? 14.611 20.898 3.965  1.00 10.00 ? 4  DG  A OP2   1 
ATOM   66  O "O5'" . DG  A 1 4 ? 12.784 22.072 4.951  1.00 10.00 ? 4  DG  A "O5'" 1 
ATOM   67  C "C5'" . DG  A 1 4 ? 13.134 21.659 6.223  1.00 10.00 ? 4  DG  A "C5'" 1 
ATOM   68  C "C4'" . DG  A 1 4 ? 12.295 22.545 7.154  1.00 10.00 ? 4  DG  A "C4'" 1 
ATOM   69  O "O4'" . DG  A 1 4 ? 10.933 22.353 6.899  1.00 10.00 ? 4  DG  A "O4'" 1 
ATOM   70  C "C3'" . DG  A 1 4 ? 12.494 22.237 8.671  1.00 10.00 ? 4  DG  A "C3'" 1 
ATOM   71  O "O3'" . DG  A 1 4 ? 13.528 23.086 9.061  1.00 10.00 ? 4  DG  A "O3'" 1 
ATOM   72  C "C2'" . DG  A 1 4 ? 11.162 22.417 9.325  1.00 10.00 ? 4  DG  A "C2'" 1 
ATOM   73  C "C1'" . DG  A 1 4 ? 10.164 22.328 8.144  1.00 10.00 ? 4  DG  A "C1'" 1 
ATOM   74  N N9    . DG  A 1 4 ? 9.374  21.154 8.135  1.00 10.00 ? 4  DG  A N9    1 
ATOM   75  C C8    . DG  A 1 4 ? 8.058  21.121 8.107  1.00 10.00 ? 4  DG  A C8    1 
ATOM   76  N N7    . DG  A 1 4 ? 7.521  19.910 8.039  1.00 10.00 ? 4  DG  A N7    1 
ATOM   77  C C5    . DG  A 1 4 ? 8.628  19.109 8.053  1.00 10.00 ? 4  DG  A C5    1 
ATOM   78  C C6    . DG  A 1 4 ? 8.754  17.688 8.003  1.00 10.00 ? 4  DG  A C6    1 
ATOM   79  O O6    . DG  A 1 4 ? 7.798  16.893 7.953  1.00 10.00 ? 4  DG  A O6    1 
ATOM   80  N N1    . DG  A 1 4 ? 9.994  17.177 8.003  1.00 10.00 ? 4  DG  A N1    1 
ATOM   81  C C2    . DG  A 1 4 ? 11.057 17.994 8.017  1.00 10.00 ? 4  DG  A C2    1 
ATOM   82  N N2    . DG  A 1 4 ? 12.212 17.517 8.030  1.00 10.00 ? 4  DG  A N2    1 
ATOM   83  N N3    . DG  A 1 4 ? 11.064 19.348 8.085  1.00 10.00 ? 4  DG  A N3    1 
ATOM   84  C C4    . DG  A 1 4 ? 9.795  19.825 8.098  1.00 10.00 ? 4  DG  A C4    1 
HETATM 85  N N1    . 5CM A 1 5 ? 12.214 18.397 11.932 1.00 10.00 ? 5  5CM A N1    1 
HETATM 86  C C2    . 5CM A 1 5 ? 11.729 17.125 11.727 1.00 10.00 ? 5  5CM A C2    1 
HETATM 87  N N3    . 5CM A 1 5 ? 10.386 16.994 11.537 1.00 10.00 ? 5  5CM A N3    1 
HETATM 88  C C4    . 5CM A 1 5 ? 9.494  18.058 11.578 1.00 10.00 ? 5  5CM A C4    1 
HETATM 89  C C5    . 5CM A 1 5 ? 10.022 19.360 11.823 1.00 10.00 ? 5  5CM A C5    1 
HETATM 90  C C5A   . 5CM A 1 5 ? 9.100  20.552 11.882 1.00 10.00 ? 5  5CM A C5A   1 
HETATM 91  C C6    . 5CM A 1 5 ? 11.354 19.488 11.982 1.00 10.00 ? 5  5CM A C6    1 
HETATM 92  O O2    . 5CM A 1 5 ? 12.459 16.147 11.691 1.00 10.00 ? 5  5CM A O2    1 
HETATM 93  N N4    . 5CM A 1 5 ? 8.177  17.789 11.410 1.00 10.00 ? 5  5CM A N4    1 
HETATM 94  C "C1'" . 5CM A 1 5 ? 13.712 18.455 12.095 1.00 10.00 ? 5  5CM A "C1'" 1 
HETATM 95  C "C2'" . 5CM A 1 5 ? 14.450 18.568 10.692 1.00 10.00 ? 5  5CM A "C2'" 1 
HETATM 96  C "C3'" . 5CM A 1 5 ? 15.751 19.158 11.178 1.00 10.00 ? 5  5CM A "C3'" 1 
HETATM 97  C "C4'" . 5CM A 1 5 ? 15.385 20.075 12.381 1.00 10.00 ? 5  5CM A "C4'" 1 
HETATM 98  O "O4'" . 5CM A 1 5 ? 14.110 19.629 12.745 1.00 10.00 ? 5  5CM A "O4'" 1 
HETATM 99  O "O3'" . 5CM A 1 5 ? 16.561 18.156 11.723 1.00 10.00 ? 5  5CM A "O3'" 1 
HETATM 100 C "C5'" . 5CM A 1 5 ? 15.307 21.573 12.064 1.00 10.00 ? 5  5CM A "C5'" 1 
HETATM 101 O "O5'" . 5CM A 1 5 ? 14.506 21.720 10.928 1.00 10.00 ? 5  5CM A "O5'" 1 
HETATM 102 P P     A 5CM A 1 5 ? 13.959 23.218 10.569 0.50 10.00 ? 5  5CM A P     1 
HETATM 103 P P     B 5CM A 1 5 ? 14.918 22.521 9.570  0.50 10.00 ? 5  5CM A P     1 
HETATM 104 O OP1   A 5CM A 1 5 ? 12.773 23.524 11.391 0.50 10.00 ? 5  5CM A OP1   1 
HETATM 105 O OP1   B 5CM A 1 5 ? 15.560 21.702 8.544  0.50 10.00 ? 5  5CM A OP1   1 
HETATM 106 O OP2   A 5CM A 1 5 ? 15.103 24.016 10.556 0.50 10.00 ? 5  5CM A OP2   1 
HETATM 107 O OP2   B 5CM A 1 5 ? 15.613 23.680 10.083 0.50 10.00 ? 5  5CM A OP2   1 
ATOM   108 P P     . DG  A 1 6 ? 18.133 18.134 11.578 1.00 10.00 ? 6  DG  A P     1 
ATOM   109 O OP1   . DG  A 1 6 ? 18.419 18.593 10.238 1.00 10.00 ? 6  DG  A OP1   1 
ATOM   110 O OP2   . DG  A 1 6 ? 18.453 16.847 12.095 1.00 10.00 ? 6  DG  A OP2   1 
ATOM   111 O "O5'" . DG  A 1 6 ? 18.797 19.201 12.649 1.00 10.00 ? 6  DG  A "O5'" 1 
ATOM   112 C "C5'" . DG  A 1 6 ? 18.875 18.883 13.985 1.00 10.00 ? 6  DG  A "C5'" 1 
ATOM   113 C "C4'" . DG  A 1 6 ? 19.316 20.155 14.662 1.00 10.00 ? 6  DG  A "C4'" 1 
ATOM   114 O "O4'" . DG  A 1 6 ? 18.257 21.133 14.548 1.00 10.00 ? 6  DG  A "O4'" 1 
ATOM   115 C "C3'" . DG  A 1 6 ? 19.582 19.971 16.210 1.00 10.00 ? 6  DG  A "C3'" 1 
ATOM   116 O "O3'" . DG  A 1 6 ? 20.696 20.794 16.560 1.00 10.00 ? 6  DG  A "O3'" 1 
ATOM   117 C "C2'" . DG  A 1 6 ? 18.316 20.402 16.814 1.00 10.00 ? 6  DG  A "C2'" 1 
ATOM   118 C "C1'" . DG  A 1 6 ? 17.778 21.503 15.870 1.00 10.00 ? 6  DG  A "C1'" 1 
ATOM   119 N N9    . DG  A 1 6 ? 16.368 21.616 15.861 1.00 10.00 ? 6  DG  A N9    1 
ATOM   120 C C8    . DG  A 1 6 ? 15.675 22.769 15.861 1.00 10.00 ? 6  DG  A C8    1 
ATOM   121 N N7    . DG  A 1 6 ? 14.370 22.607 15.806 1.00 10.00 ? 6  DG  A N7    1 
ATOM   122 C C5    . DG  A 1 6 ? 14.224 21.258 15.747 1.00 10.00 ? 6  DG  A C5    1 
ATOM   123 C C6    . DG  A 1 6 ? 13.041 20.451 15.674 1.00 10.00 ? 6  DG  A C6    1 
ATOM   124 O O6    . DG  A 1 6 ? 11.858 20.892 15.652 1.00 10.00 ? 6  DG  A O6    1 
ATOM   125 N N1    . DG  A 1 6 ? 13.219 19.112 15.656 1.00 10.00 ? 6  DG  A N1    1 
ATOM   126 C C2    . DG  A 1 6 ? 14.462 18.617 15.674 1.00 10.00 ? 6  DG  A C2    1 
ATOM   127 N N2    . DG  A 1 6 ? 14.622 17.373 15.624 1.00 10.00 ? 6  DG  A N2    1 
ATOM   128 N N3    . DG  A 1 6 ? 15.632 19.262 15.733 1.00 10.00 ? 6  DG  A N3    1 
ATOM   129 C C4    . DG  A 1 6 ? 15.416 20.604 15.774 1.00 10.00 ? 6  DG  A C4    1 
HETATM 130 N N1    . 5CM B 1 1 ? 10.040 15.349 14.902 1.00 10.00 ? 7  5CM B N1    1 
HETATM 131 C C2    . 5CM B 1 1 ? 11.121 16.138 15.079 1.00 10.00 ? 7  5CM B C2    1 
HETATM 132 N N3    . 5CM B 1 1 ? 10.848 17.492 15.184 1.00 10.00 ? 7  5CM B N3    1 
HETATM 133 C C4    . 5CM B 1 1 ? 9.608  18.061 15.125 1.00 10.00 ? 7  5CM B C4    1 
HETATM 134 C C5    . 5CM B 1 1 ? 8.516  17.190 14.902 1.00 10.00 ? 7  5CM B C5    1 
HETATM 135 C C5A   . 5CM B 1 1 ? 7.111  17.724 14.816 1.00 10.00 ? 7  5CM B C5A   1 
HETATM 136 C C6    . 5CM B 1 1 ? 8.777  15.872 14.798 1.00 10.00 ? 7  5CM B C6    1 
HETATM 137 O O2    . 5CM B 1 1 ? 12.279 15.740 15.170 1.00 10.00 ? 7  5CM B O2    1 
HETATM 138 N N4    . 5CM B 1 1 ? 9.530  19.409 15.257 1.00 10.00 ? 7  5CM B N4    1 
HETATM 139 C "C1'" . 5CM B 1 1 ? 10.349 13.885 14.793 1.00 10.00 ? 7  5CM B "C1'" 1 
HETATM 140 C "C2'" . 5CM B 1 1 ? 10.200 13.212 16.210 1.00 10.00 ? 7  5CM B "C2'" 1 
HETATM 141 C "C3'" . 5CM B 1 1 ? 9.986  11.742 15.738 1.00 10.00 ? 7  5CM B "C3'" 1 
HETATM 142 C "C4'" . 5CM B 1 1 ? 9.120  11.876 14.480 1.00 10.00 ? 7  5CM B "C4'" 1 
HETATM 143 O "O4'" . 5CM B 1 1 ? 9.333  13.273 14.030 1.00 10.00 ? 7  5CM B "O4'" 1 
HETATM 144 O "O3'" . 5CM B 1 1 ? 11.226 11.173 15.497 1.00 10.00 ? 7  5CM B "O3'" 1 
HETATM 145 C "C5'" . 5CM B 1 1 ? 7.639  11.647 14.648 1.00 10.00 ? 7  5CM B "C5'" 1 
HETATM 146 O "O5'" . 5CM B 1 1 ? 7.111  12.561 15.611 1.00 10.00 ? 7  5CM B "O5'" 1 
ATOM   147 P P     . DG  B 1 2 ? 11.480 9.602  15.606 1.00 10.00 ? 8  DG  B P     1 
ATOM   148 O OP1   . DG  B 1 2 ? 10.729 9.171  16.710 1.00 10.00 ? 8  DG  B OP1   1 
ATOM   149 O OP2   . DG  B 1 2 ? 12.928 9.468  15.520 1.00 10.00 ? 8  DG  B OP2   1 
ATOM   150 O "O5'" . DG  B 1 2 ? 10.656 8.908  14.380 1.00 10.00 ? 8  DG  B "O5'" 1 
ATOM   151 C "C5'" . DG  B 1 2 ? 11.281 9.229  13.126 1.00 10.00 ? 8  DG  B "C5'" 1 
ATOM   152 C "C4'" . DG  B 1 2 ? 10.331 8.557  12.141 1.00 10.00 ? 8  DG  B "C4'" 1 
ATOM   153 O "O4'" . DG  B 1 2 ? 9.003  9.018  12.245 1.00 10.00 ? 8  DG  B "O4'" 1 
ATOM   154 C "C3'" . DG  B 1 2 ? 10.784 8.792  10.660 1.00 10.00 ? 8  DG  B "C3'" 1 
ATOM   155 O "O3'" . DG  B 1 2 ? 11.501 7.639  10.238 1.00 10.00 ? 8  DG  B "O3'" 1 
ATOM   156 C "C2'" . DG  B 1 2 ? 9.553  9.049  9.897  1.00 10.00 ? 8  DG  B "C2'" 1 
ATOM   157 C "C1'" . DG  B 1 2 ? 8.431  9.263  10.942 1.00 10.00 ? 8  DG  B "C1'" 1 
ATOM   158 N N9    . DG  B 1 2 ? 7.909  10.583 10.955 1.00 10.00 ? 8  DG  B N9    1 
ATOM   159 C C8    . DG  B 1 2 ? 6.614  10.904 10.969 1.00 10.00 ? 8  DG  B C8    1 
ATOM   160 N N7    . DG  B 1 2 ? 6.383  12.216 11.005 1.00 10.00 ? 8  DG  B N7    1 
ATOM   161 C C5    . DG  B 1 2 ? 7.647  12.742 11.028 1.00 10.00 ? 8  DG  B C5    1 
ATOM   162 C C6    . DG  B 1 2 ? 8.111  14.093 11.114 1.00 10.00 ? 8  DG  B C6    1 
ATOM   163 O O6    . DG  B 1 2 ? 7.340  15.102 11.169 1.00 10.00 ? 8  DG  B O6    1 
ATOM   164 N N1    . DG  B 1 2 ? 9.431  14.270 11.119 1.00 10.00 ? 8  DG  B N1    1 
ATOM   165 C C2    . DG  B 1 2 ? 10.279 13.237 11.087 1.00 10.00 ? 8  DG  B C2    1 
ATOM   166 N N2    . DG  B 1 2 ? 11.508 13.448 11.151 1.00 10.00 ? 8  DG  B N2    1 
ATOM   167 N N3    . DG  B 1 2 ? 9.958  11.938 11.033 1.00 10.00 ? 8  DG  B N3    1 
ATOM   168 C C4    . DG  B 1 2 ? 8.621  11.785 11.019 1.00 10.00 ? 8  DG  B C4    1 
HETATM 169 N N1    . 5CM B 1 3 ? 11.794 12.482 7.367  1.00 10.00 ? 9  5CM B N1    1 
HETATM 170 C C2    . 5CM B 1 3 ? 11.642 13.836 7.585  1.00 10.00 ? 9  5CM B C2    1 
HETATM 171 N N3    . 5CM B 1 3 ? 10.358 14.298 7.676  1.00 10.00 ? 9  5CM B N3    1 
HETATM 172 C C4    . 5CM B 1 3 ? 9.226  13.509 7.594  1.00 10.00 ? 9  5CM B C4    1 
HETATM 173 C C5    . 5CM B 1 3 ? 9.439  12.112 7.372  1.00 10.00 ? 9  5CM B C5    1 
HETATM 174 C C5A   . 5CM B 1 3 ? 8.280  11.146 7.244  1.00 10.00 ? 9  5CM B C5A   1 
HETATM 175 C C6    . 5CM B 1 3 ? 10.690 11.666 7.258  1.00 10.00 ? 9  5CM B C6    1 
HETATM 176 O O2    . 5CM B 1 3 ? 12.597 14.588 7.676  1.00 10.00 ? 9  5CM B O2    1 
HETATM 177 N N4    . 5CM B 1 3 ? 8.010  14.090 7.726  1.00 10.00 ? 9  5CM B N4    1 
HETATM 178 C "C1'" . 5CM B 1 3 ? 13.205 12.023 7.258  1.00 10.00 ? 9  5CM B "C1'" 1 
HETATM 179 C "C2'" . 5CM B 1 3 ? 13.766 11.745 8.702  1.00 10.00 ? 9  5CM B "C2'" 1 
HETATM 180 C "C3'" . 5CM B 1 3 ? 14.954 10.837 8.312  1.00 10.00 ? 9  5CM B "C3'" 1 
HETATM 181 C "C4'" . 5CM B 1 3 ? 14.421 10.027 7.122  1.00 10.00 ? 9  5CM B "C4'" 1 
HETATM 182 O "O4'" . 5CM B 1 3 ? 13.293 10.767 6.604  1.00 10.00 ? 9  5CM B "O4'" 1 
HETATM 183 O "O3'" . 5CM B 1 3 ? 16.037 11.592 7.839  1.00 10.00 ? 9  5CM B "O3'" 1 
HETATM 184 C "C5'" . 5CM B 1 3 ? 13.950 8.605  7.458  1.00 10.00 ? 9  5CM B "C5'" 1 
HETATM 185 O "O5'" . 5CM B 1 3 ? 12.943 8.618  8.385  1.00 10.00 ? 9  5CM B "O5'" 1 
HETATM 186 P P     . 5CM B 1 3 ? 13.013 7.765  9.806  1.00 10.00 ? 9  5CM B P     1 
HETATM 187 O OP1   . 5CM B 1 3 ? 13.341 6.469  9.347  1.00 10.00 ? 9  5CM B OP1   1 
HETATM 188 O OP2   . 5CM B 1 3 ? 13.791 8.502  10.778 1.00 10.00 ? 9  5CM B OP2   1 
ATOM   189 P P     . DG  B 1 4 ? 17.536 11.115 7.917  1.00 10.00 ? 10 DG  B P     1 
ATOM   190 O OP1   . DG  B 1 4 ? 17.758 10.382 9.084  1.00 10.00 ? 10 DG  B OP1   1 
ATOM   191 O OP2   . DG  B 1 4 ? 18.335 12.359 7.667  1.00 10.00 ? 10 DG  B OP2   1 
ATOM   192 O "O5'" . DG  B 1 4 ? 17.696 10.048 6.709  1.00 10.00 ? 10 DG  B "O5'" 1 
ATOM   193 C "C5'" . DG  B 1 4 ? 17.776 10.672 5.414  1.00 10.00 ? 10 DG  B "C5'" 1 
ATOM   194 C "C4'" . DG  B 1 4 ? 17.890 9.526  4.438  1.00 10.00 ? 10 DG  B "C4'" 1 
ATOM   195 O "O4'" . DG  B 1 4 ? 16.828 8.578  4.551  1.00 10.00 ? 10 DG  B "O4'" 1 
ATOM   196 C "C3'" . DG  B 1 4 ? 17.819 10.015 2.930  1.00 10.00 ? 10 DG  B "C3'" 1 
ATOM   197 O "O3'" . DG  B 1 4 ? 19.161 10.051 2.484  1.00 10.00 ? 10 DG  B "O3'" 1 
ATOM   198 C "C2'" . DG  B 1 4 ? 16.959 9.070  2.194  1.00 10.00 ? 10 DG  B "C2'" 1 
ATOM   199 C "C1'" . DG  B 1 4 ? 16.222 8.239  3.248  1.00 10.00 ? 10 DG  B "C1'" 1 
ATOM   200 N N9    . DG  B 1 4 ? 14.840 8.450  3.393  1.00 10.00 ? 10 DG  B N9    1 
ATOM   201 C C8    . DG  B 1 4 ? 13.911 7.508  3.511  1.00 10.00 ? 10 DG  B C8    1 
ATOM   202 N N7    . DG  B 1 4 ? 12.681 7.979  3.688  1.00 10.00 ? 10 DG  B N7    1 
ATOM   203 C C5    . DG  B 1 4 ? 12.856 9.296  3.656  1.00 10.00 ? 10 DG  B C5    1 
ATOM   204 C C6    . DG  B 1 4 ? 11.905 10.369 3.788  1.00 10.00 ? 10 DG  B C6    1 
ATOM   205 O O6    . DG  B 1 4 ? 10.668 10.232 3.956  1.00 10.00 ? 10 DG  B O6    1 
ATOM   206 N N1    . DG  B 1 4 ? 12.389 11.620 3.738  1.00 10.00 ? 10 DG  B N1    1 
ATOM   207 C C2    . DG  B 1 4 ? 13.697 11.834 3.593  1.00 10.00 ? 10 DG  B C2    1 
ATOM   208 N N2    . DG  B 1 4 ? 14.153 12.983 3.575  1.00 10.00 ? 10 DG  B N2    1 
ATOM   209 N N3    . DG  B 1 4 ? 14.682 10.904 3.447  1.00 10.00 ? 10 DG  B N3    1 
ATOM   210 C C4    . DG  B 1 4 ? 14.151 9.296  3.484  1.00 10.00 ? 10 DG  B C4    1 
HETATM 211 N N1    . 5CM B 1 5 ? 14.888 12.421 -0.309 1.00 10.00 ? 11 5CM B N1    1 
HETATM 212 C C2    . 5CM B 1 5 ? 13.657 12.977 -0.100 1.00 10.00 ? 11 5CM B C2    1 
HETATM 213 N N3    . 5CM B 1 5 ? 12.620 12.112 0.055  1.00 10.00 ? 11 5CM B N3    1 
HETATM 214 C C4    . 5CM B 1 5 ? 12.725 10.721 0.055  1.00 10.00 ? 11 5CM B C4    1 
HETATM 215 C C5    . 5CM B 1 5 ? 14.016 10.195 -0.136 1.00 10.00 ? 11 5CM B C5    1 
HETATM 216 C C5A   . 5CM B 1 5 ? 14.231 8.706  -0.168 1.00 10.00 ? 11 5CM B C5A   1 
HETATM 217 C C6    . 5CM B 1 5 ? 15.034 11.045 -0.327 1.00 10.00 ? 11 5CM B C6    1 
HETATM 218 O O2    . 5CM B 1 5 ? 13.462 14.175 -0.077 1.00 10.00 ? 11 5CM B O2    1 
HETATM 219 N N4    . 5CM B 1 5 ? 11.588 10.009 0.263  1.00 10.00 ? 11 5CM B N4    1 
HETATM 220 C "C1'" . 5CM B 1 5 ? 15.991 13.423 -0.468 1.00 10.00 ? 11 5CM B "C1'" 1 
HETATM 221 C "C2'" . 5CM B 1 5 ? 16.636 13.775 0.936  1.00 10.00 ? 11 5CM B "C2'" 1 
HETATM 222 C "C3'" . 5CM B 1 5 ? 17.991 14.298 0.472  1.00 10.00 ? 11 5CM B "C3'" 1 
HETATM 223 C "C4'" . 5CM B 1 5 ? 18.312 13.396 -0.768 1.00 10.00 ? 11 5CM B "C4'" 1 
HETATM 224 O "O4'" . 5CM B 1 5 ? 17.053 12.794 -1.158 1.00 10.00 ? 11 5CM B "O4'" 1 
HETATM 225 O "O3'" . 5CM B 1 5 ? 17.938 15.591 -0.100 1.00 10.00 ? 11 5CM B "O3'" 1 
HETATM 226 C "C5'" . 5CM B 1 5 ? 19.385 12.323 -0.554 1.00 10.00 ? 11 5CM B "C5'" 1 
HETATM 227 O "O5'" . 5CM B 1 5 ? 18.929 11.467 0.436  1.00 10.00 ? 11 5CM B "O5'" 1 
HETATM 228 P P     . 5CM B 1 5 ? 19.765 11.393 1.867  1.00 10.00 ? 11 5CM B P     1 
HETATM 229 O OP1   . 5CM B 1 5 ? 20.996 10.907 1.294  1.00 10.00 ? 11 5CM B OP1   1 
HETATM 230 O OP2   . 5CM B 1 5 ? 19.602 12.482 2.811  1.00 10.00 ? 11 5CM B OP2   1 
ATOM   231 P P     . DG  B 1 6 ? 19.074 16.703 -0.041 1.00 10.00 ? 12 DG  B P     1 
ATOM   232 O OP1   . DG  B 1 6 ? 19.563 16.517 1.267  1.00 10.00 ? 12 DG  B OP1   1 
ATOM   233 O OP2   . DG  B 1 6 ? 18.444 17.945 -0.531 1.00 10.00 ? 12 DG  B OP2   1 
ATOM   234 O "O5'" . DG  B 1 6 ? 20.374 16.239 -0.927 1.00 10.00 ? 12 DG  B "O5'" 1 
ATOM   235 C "C5'" . DG  B 1 6 ? 20.145 16.468 -2.348 1.00 10.00 ? 12 DG  B "C5'" 1 
ATOM   236 C "C4'" . DG  B 1 6 ? 21.307 15.780 -3.070 1.00 10.00 ? 12 DG  B "C4'" 1 
ATOM   237 O "O4'" . DG  B 1 6 ? 21.193 14.353 -2.930 1.00 10.00 ? 12 DG  B "O4'" 1 
ATOM   238 C "C3'" . DG  B 1 6 ? 21.411 16.074 -4.606 1.00 10.00 ? 12 DG  B "C3'" 1 
ATOM   239 O "O3'" . DG  B 1 6 ? 22.804 16.159 -4.996 1.00 10.00 ? 12 DG  B "O3'" 1 
ATOM   240 C "C2'" . DG  B 1 6 ? 20.690 14.912 -5.201 1.00 10.00 ? 12 DG  B "C2'" 1 
ATOM   241 C "C1'" . DG  B 1 6 ? 21.115 13.756 -4.247 1.00 10.00 ? 12 DG  B "C1'" 1 
ATOM   242 N N9    . DG  B 1 6 ? 20.191 12.702 -4.201 1.00 10.00 ? 12 DG  B N9    1 
ATOM   243 C C8    . DG  B 1 6 ? 20.486 11.409 -4.156 1.00 10.00 ? 12 DG  B C8    1 
ATOM   244 N N7    . DG  B 1 6 ? 19.413 10.614 -4.079 1.00 10.00 ? 12 DG  B N7    1 
ATOM   245 C C5    . DG  B 1 6 ? 18.383 11.507 -4.097 1.00 10.00 ? 12 DG  B C5    1 
ATOM   246 C C6    . DG  B 1 6 ? 16.964 11.290 -4.070 1.00 10.00 ? 12 DG  B C6    1 
ATOM   247 O O6    . DG  B 1 6 ? 16.437 10.137 -4.011 1.00 10.00 ? 12 DG  B O6    1 
ATOM   248 N N1    . DG  B 1 6 ? 16.172 12.515 -4.079 1.00 10.00 ? 12 DG  B N1    1 
ATOM   249 C C2    . DG  B 1 6 ? 16.741 13.607 -4.115 1.00 10.00 ? 12 DG  B C2    1 
ATOM   250 N N2    . DG  B 1 6 ? 16.005 14.606 -4.115 1.00 10.00 ? 12 DG  B N2    1 
ATOM   251 N N3    . DG  B 1 6 ? 18.044 13.928 -4.179 1.00 10.00 ? 12 DG  B N3    1 
ATOM   252 C C4    . DG  B 1 6 ? 18.799 12.803 -4.156 1.00 10.00 ? 12 DG  B C4    1 
# 
