data_wwPDB_remediated_restraints_file_for_PDB_entry_2b7e # This wwPDB archive file contains, for PDB entry 2b7e: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389-396. ####################### # Entry information # ####################### save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_2b7e _Entry.Title 'wwPDB remediated NMR restraints for PDB entry 2b7e' _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details 'Contains the remediated restraint lists and coordinates for PDB entry 2b7e' save_ ############################################# # Molecular system (assembly) description # ############################################# save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_2b7e _Assembly.ID 1 _Assembly.Name 2b7e _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state 'not present' _Assembly.Molecular_mass 7147.0559 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 'Pre mRNA processing protein PRP40' 1 $Pre_mRNA_processing_protein_PRP40 A . no . . . . . . rr_2b7e 1 stop_ save_ #################################### # Biological polymers and ligands # #################################### save_Pre_mRNA_processing_protein_PRP40 _Entity.Sf_category entity _Entity.Sf_framecode Pre_mRNA_processing_protein_PRP40 _Entity.Entry_ID rr_2b7e _Entity.ID 1 _Entity.Name Pre_mRNA_processing_protein_PRP40 _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code ; GAMEAEKEFITMLKENQVDS TWSFSRIISELGTRDPRYWM VDDDPLWKKEMFEKYLSNR ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 59 _Entity.Paramagnetic no _Entity.Thiol_state 'not present' _Entity.Parent_entity_ID 1 _Entity.Formula_weight 7147.0559 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . GLY . rr_2b7e 1 2 . ALA . rr_2b7e 1 3 . MET . rr_2b7e 1 4 . GLU . rr_2b7e 1 5 . ALA . rr_2b7e 1 6 . GLU . rr_2b7e 1 7 . LYS . rr_2b7e 1 8 . GLU . rr_2b7e 1 9 . PHE . rr_2b7e 1 10 . ILE . rr_2b7e 1 11 . THR . rr_2b7e 1 12 . MET . rr_2b7e 1 13 . LEU . rr_2b7e 1 14 . LYS . rr_2b7e 1 15 . GLU . rr_2b7e 1 16 . ASN . rr_2b7e 1 17 . GLN . rr_2b7e 1 18 . VAL . rr_2b7e 1 19 . ASP . rr_2b7e 1 20 . SER . rr_2b7e 1 21 . THR . rr_2b7e 1 22 . TRP . rr_2b7e 1 23 . SER . rr_2b7e 1 24 . PHE . rr_2b7e 1 25 . SER . rr_2b7e 1 26 . ARG . rr_2b7e 1 27 . ILE . rr_2b7e 1 28 . ILE . rr_2b7e 1 29 . SER . rr_2b7e 1 30 . GLU . rr_2b7e 1 31 . LEU . rr_2b7e 1 32 . GLY . rr_2b7e 1 33 . THR . rr_2b7e 1 34 . ARG . rr_2b7e 1 35 . ASP . rr_2b7e 1 36 . PRO . rr_2b7e 1 37 . ARG . rr_2b7e 1 38 . TYR . rr_2b7e 1 39 . TRP . rr_2b7e 1 40 . MET . rr_2b7e 1 41 . VAL . rr_2b7e 1 42 . ASP . rr_2b7e 1 43 . ASP . rr_2b7e 1 44 . ASP . rr_2b7e 1 45 . PRO . rr_2b7e 1 46 . LEU . rr_2b7e 1 47 . TRP . rr_2b7e 1 48 . LYS . rr_2b7e 1 49 . LYS . rr_2b7e 1 50 . GLU . rr_2b7e 1 51 . MET . rr_2b7e 1 52 . PHE . rr_2b7e 1 53 . GLU . rr_2b7e 1 54 . LYS . rr_2b7e 1 55 . TYR . rr_2b7e 1 56 . LEU . rr_2b7e 1 57 . SER . rr_2b7e 1 58 . ASN . rr_2b7e 1 59 . ARG . rr_2b7e 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . GLY 1 1 rr_2b7e 1 . ALA 2 2 rr_2b7e 1 . MET 3 3 rr_2b7e 1 . GLU 4 4 rr_2b7e 1 . ALA 5 5 rr_2b7e 1 . GLU 6 6 rr_2b7e 1 . LYS 7 7 rr_2b7e 1 . GLU 8 8 rr_2b7e 1 . PHE 9 9 rr_2b7e 1 . ILE 10 10 rr_2b7e 1 . THR 11 11 rr_2b7e 1 . MET 12 12 rr_2b7e 1 . LEU 13 13 rr_2b7e 1 . LYS 14 14 rr_2b7e 1 . GLU 15 15 rr_2b7e 1 . ASN 16 16 rr_2b7e 1 . GLN 17 17 rr_2b7e 1 . VAL 18 18 rr_2b7e 1 . ASP 19 19 rr_2b7e 1 . SER 20 20 rr_2b7e 1 . THR 21 21 rr_2b7e 1 . TRP 22 22 rr_2b7e 1 . SER 23 23 rr_2b7e 1 . PHE 24 24 rr_2b7e 1 . SER 25 25 rr_2b7e 1 . ARG 26 26 rr_2b7e 1 . ILE 27 27 rr_2b7e 1 . ILE 28 28 rr_2b7e 1 . SER 29 29 rr_2b7e 1 . GLU 30 30 rr_2b7e 1 . LEU 31 31 rr_2b7e 1 . GLY 32 32 rr_2b7e 1 . THR 33 33 rr_2b7e 1 . ARG 34 34 rr_2b7e 1 . ASP 35 35 rr_2b7e 1 . PRO 36 36 rr_2b7e 1 . ARG 37 37 rr_2b7e 1 . TYR 38 38 rr_2b7e 1 . TRP 39 39 rr_2b7e 1 . MET 40 40 rr_2b7e 1 . VAL 41 41 rr_2b7e 1 . ASP 42 42 rr_2b7e 1 . ASP 43 43 rr_2b7e 1 . ASP 44 44 rr_2b7e 1 . PRO 45 45 rr_2b7e 1 . LEU 46 46 rr_2b7e 1 . TRP 47 47 rr_2b7e 1 . LYS 48 48 rr_2b7e 1 . LYS 49 49 rr_2b7e 1 . GLU 50 50 rr_2b7e 1 . MET 51 51 rr_2b7e 1 . PHE 52 52 rr_2b7e 1 . GLU 53 53 rr_2b7e 1 . LYS 54 54 rr_2b7e 1 . TYR 55 55 rr_2b7e 1 . LEU 56 56 rr_2b7e 1 . SER 57 57 rr_2b7e 1 . ASN 58 58 rr_2b7e 1 . ARG 59 59 rr_2b7e 1 stop_ save_ ############################## # Structure determinations # ############################## ########################## # Conformer statistics # ########################## save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_2b7e _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 12 save_ ########################### # Constraint Statistics # ########################### save_constraint_statistics _Constraint_stat_list.Sf_framecode constraint_statistics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_2b7e _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 2b7e.mr . . 'MR format' 1 comment 'Not applicable' 'Not applicable' 0 rr_2b7e 1 1 2b7e.mr . . unknown 2 peak 'Not applicable' 'Not applicable' 0 rr_2b7e 1 1 2b7e.mr . . 'MR format' 3 'nomenclature mapping' 'Not applicable' 'Not applicable' 0 rr_2b7e 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_2b7e _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details 'Generated by Wattos' _Org_constr_file_comment.Comment ; *HEADER STRUCTURAL PROTEIN 04-OCT-05 2B7E *TITLE FIRST FF DOMAIN OF PRP40 YEAST PROTEIN *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: PRE-MRNA PROCESSING PROTEIN PRP40; *COMPND 3 CHAIN: A; *COMPND 4 FRAGMENT: FF1 DOMAIN (RESIDUES 134-189); *COMPND 5 ENGINEERED: YES *SOURCE MOL_ID: 1; *SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; *SOURCE 3 ORGANISM_COMMON: YEAST; *SOURCE 4 GENE: PRP40; *SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; *SOURCE 6 EXPRESSION_SYSTEM_COMMON: BACTERIA *KEYWDS STRUCTURAL PROTEIN *EXPDTA NMR, 12 STRUCTURES *AUTHOR A.GASCH, S.WIESNER, P.MARTIN-MALPARTIDA, X.RAMIREZ-ESPAIN, *AUTHOR 2 L.RUIZ, M.J.MACIAS *REVDAT 1 01-NOV-05 2B7E 0 ; save_