data_wwPDB_remediated_restraints_file_for_PDB_entry_2err # This wwPDB archive file contains, for PDB entry 2err: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389–396. save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_2err _Entry.Title "wwPDB remediated NMR restraints for PDB entry 2err" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 2err" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_2err _Assembly.ID 1 _Assembly.Name 2err _Assembly.Number_of_components 2 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "not present" _Assembly.Molecular_mass 14648.30502 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 UGCAUGU 1 $UGCAUGU A . no . . . . . . rr_2err 1 2 "Ataxin 2 binding protein 1" 2 $Ataxin_2_binding_protein_1 B . no . . . . . . rr_2err 1 stop_ save_ save_UGCAUGU _Entity.Sf_category entity _Entity.Sf_framecode UGCAUGU _Entity.Entry_ID rr_2err _Entity.ID 1 _Entity.Name UGCAUGU _Entity.Type polymer _Entity.Polymer_type polyribonucleotide _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code UGCAUGU _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality yes _Entity.Nstd_linkage no _Entity.Number_of_monomers 7 _Entity.Paramagnetic no _Entity.Thiol_state "not present" _Entity.Parent_entity_ID 1 _Entity.Formula_weight 2262.33552 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . U . rr_2err 1 2 . G . rr_2err 1 3 . C . rr_2err 1 4 . A . rr_2err 1 5 . U . rr_2err 1 6 . G . rr_2err 1 7 . U . rr_2err 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . U 1 1 rr_2err 1 . G 2 2 rr_2err 1 . C 3 3 rr_2err 1 . A 4 4 rr_2err 1 . U 5 5 rr_2err 1 . G 6 6 rr_2err 1 . U 7 7 rr_2err 1 stop_ save_ save_Ataxin_2_binding_protein_1 _Entity.Sf_category entity _Entity.Sf_framecode Ataxin_2_binding_protein_1 _Entity.Entry_ID rr_2err _Entity.ID 2 _Entity.Name Ataxin_2_binding_protein_1 _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID B _Entity.Polymer_seq_one_letter_code ; MGSSHHHHHHSSGLVPRGSH MNTENKSQPKRLHVSNIPFR FRDPDLRQMFGQFGKILDVE IIFNERGSKGFGFVTFENSA DADRAREKLHGTVVEGRKIE VNNATARVM ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 109 _Entity.Paramagnetic no _Entity.Thiol_state "not present" _Entity.Parent_entity_ID 2 _Entity.Formula_weight 12385.9695 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . MET . rr_2err 2 2 . GLY . rr_2err 2 3 . SER . rr_2err 2 4 . SER . rr_2err 2 5 . HIS . rr_2err 2 6 . HIS . rr_2err 2 7 . HIS . rr_2err 2 8 . HIS . rr_2err 2 9 . HIS . rr_2err 2 10 . HIS . rr_2err 2 11 . SER . rr_2err 2 12 . SER . rr_2err 2 13 . GLY . rr_2err 2 14 . LEU . rr_2err 2 15 . VAL . rr_2err 2 16 . PRO . rr_2err 2 17 . ARG . rr_2err 2 18 . GLY . rr_2err 2 19 . SER . rr_2err 2 20 . HIS . rr_2err 2 21 . MET . rr_2err 2 22 . ASN . rr_2err 2 23 . THR . rr_2err 2 24 . GLU . rr_2err 2 25 . ASN . rr_2err 2 26 . LYS . rr_2err 2 27 . SER . rr_2err 2 28 . GLN . rr_2err 2 29 . PRO . rr_2err 2 30 . LYS . rr_2err 2 31 . ARG . rr_2err 2 32 . LEU . rr_2err 2 33 . HIS . rr_2err 2 34 . VAL . rr_2err 2 35 . SER . rr_2err 2 36 . ASN . rr_2err 2 37 . ILE . rr_2err 2 38 . PRO . rr_2err 2 39 . PHE . rr_2err 2 40 . ARG . rr_2err 2 41 . PHE . rr_2err 2 42 . ARG . rr_2err 2 43 . ASP . rr_2err 2 44 . PRO . rr_2err 2 45 . ASP . rr_2err 2 46 . LEU . rr_2err 2 47 . ARG . rr_2err 2 48 . GLN . rr_2err 2 49 . MET . rr_2err 2 50 . PHE . rr_2err 2 51 . GLY . rr_2err 2 52 . GLN . rr_2err 2 53 . PHE . rr_2err 2 54 . GLY . rr_2err 2 55 . LYS . rr_2err 2 56 . ILE . rr_2err 2 57 . LEU . rr_2err 2 58 . ASP . rr_2err 2 59 . VAL . rr_2err 2 60 . GLU . rr_2err 2 61 . ILE . rr_2err 2 62 . ILE . rr_2err 2 63 . PHE . rr_2err 2 64 . ASN . rr_2err 2 65 . GLU . rr_2err 2 66 . ARG . rr_2err 2 67 . GLY . rr_2err 2 68 . SER . rr_2err 2 69 . LYS . rr_2err 2 70 . GLY . rr_2err 2 71 . PHE . rr_2err 2 72 . GLY . rr_2err 2 73 . PHE . rr_2err 2 74 . VAL . rr_2err 2 75 . THR . rr_2err 2 76 . PHE . rr_2err 2 77 . GLU . rr_2err 2 78 . ASN . rr_2err 2 79 . SER . rr_2err 2 80 . ALA . rr_2err 2 81 . ASP . rr_2err 2 82 . ALA . rr_2err 2 83 . ASP . rr_2err 2 84 . ARG . rr_2err 2 85 . ALA . rr_2err 2 86 . ARG . rr_2err 2 87 . GLU . rr_2err 2 88 . LYS . rr_2err 2 89 . LEU . rr_2err 2 90 . HIS . rr_2err 2 91 . GLY . rr_2err 2 92 . THR . rr_2err 2 93 . VAL . rr_2err 2 94 . VAL . rr_2err 2 95 . GLU . rr_2err 2 96 . GLY . rr_2err 2 97 . ARG . rr_2err 2 98 . LYS . rr_2err 2 99 . ILE . rr_2err 2 100 . GLU . rr_2err 2 101 . VAL . rr_2err 2 102 . ASN . rr_2err 2 103 . ASN . rr_2err 2 104 . ALA . rr_2err 2 105 . THR . rr_2err 2 106 . ALA . rr_2err 2 107 . ARG . rr_2err 2 108 . VAL . rr_2err 2 109 . MET . rr_2err 2 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . MET 1 1 rr_2err 2 . GLY 2 2 rr_2err 2 . SER 3 3 rr_2err 2 . SER 4 4 rr_2err 2 . HIS 5 5 rr_2err 2 . HIS 6 6 rr_2err 2 . HIS 7 7 rr_2err 2 . HIS 8 8 rr_2err 2 . HIS 9 9 rr_2err 2 . HIS 10 10 rr_2err 2 . SER 11 11 rr_2err 2 . SER 12 12 rr_2err 2 . GLY 13 13 rr_2err 2 . LEU 14 14 rr_2err 2 . VAL 15 15 rr_2err 2 . PRO 16 16 rr_2err 2 . ARG 17 17 rr_2err 2 . GLY 18 18 rr_2err 2 . SER 19 19 rr_2err 2 . HIS 20 20 rr_2err 2 . MET 21 21 rr_2err 2 . ASN 22 22 rr_2err 2 . THR 23 23 rr_2err 2 . GLU 24 24 rr_2err 2 . ASN 25 25 rr_2err 2 . LYS 26 26 rr_2err 2 . SER 27 27 rr_2err 2 . GLN 28 28 rr_2err 2 . PRO 29 29 rr_2err 2 . LYS 30 30 rr_2err 2 . ARG 31 31 rr_2err 2 . LEU 32 32 rr_2err 2 . HIS 33 33 rr_2err 2 . VAL 34 34 rr_2err 2 . SER 35 35 rr_2err 2 . ASN 36 36 rr_2err 2 . ILE 37 37 rr_2err 2 . PRO 38 38 rr_2err 2 . PHE 39 39 rr_2err 2 . ARG 40 40 rr_2err 2 . PHE 41 41 rr_2err 2 . ARG 42 42 rr_2err 2 . ASP 43 43 rr_2err 2 . PRO 44 44 rr_2err 2 . ASP 45 45 rr_2err 2 . LEU 46 46 rr_2err 2 . ARG 47 47 rr_2err 2 . GLN 48 48 rr_2err 2 . MET 49 49 rr_2err 2 . PHE 50 50 rr_2err 2 . GLY 51 51 rr_2err 2 . GLN 52 52 rr_2err 2 . PHE 53 53 rr_2err 2 . GLY 54 54 rr_2err 2 . LYS 55 55 rr_2err 2 . ILE 56 56 rr_2err 2 . LEU 57 57 rr_2err 2 . ASP 58 58 rr_2err 2 . VAL 59 59 rr_2err 2 . GLU 60 60 rr_2err 2 . ILE 61 61 rr_2err 2 . ILE 62 62 rr_2err 2 . PHE 63 63 rr_2err 2 . ASN 64 64 rr_2err 2 . GLU 65 65 rr_2err 2 . ARG 66 66 rr_2err 2 . GLY 67 67 rr_2err 2 . SER 68 68 rr_2err 2 . LYS 69 69 rr_2err 2 . GLY 70 70 rr_2err 2 . PHE 71 71 rr_2err 2 . GLY 72 72 rr_2err 2 . PHE 73 73 rr_2err 2 . VAL 74 74 rr_2err 2 . THR 75 75 rr_2err 2 . PHE 76 76 rr_2err 2 . GLU 77 77 rr_2err 2 . ASN 78 78 rr_2err 2 . SER 79 79 rr_2err 2 . ALA 80 80 rr_2err 2 . ASP 81 81 rr_2err 2 . ALA 82 82 rr_2err 2 . ASP 83 83 rr_2err 2 . ARG 84 84 rr_2err 2 . ALA 85 85 rr_2err 2 . ARG 86 86 rr_2err 2 . GLU 87 87 rr_2err 2 . LYS 88 88 rr_2err 2 . LEU 89 89 rr_2err 2 . HIS 90 90 rr_2err 2 . GLY 91 91 rr_2err 2 . THR 92 92 rr_2err 2 . VAL 93 93 rr_2err 2 . VAL 94 94 rr_2err 2 . GLU 95 95 rr_2err 2 . GLY 96 96 rr_2err 2 . ARG 97 97 rr_2err 2 . LYS 98 98 rr_2err 2 . ILE 99 99 rr_2err 2 . GLU 100 100 rr_2err 2 . VAL 101 101 rr_2err 2 . ASN 102 102 rr_2err 2 . ASN 103 103 rr_2err 2 . ALA 104 104 rr_2err 2 . THR 105 105 rr_2err 2 . ALA 106 106 rr_2err 2 . ARG 107 107 rr_2err 2 . VAL 108 108 rr_2err 2 . MET 109 109 rr_2err 2 stop_ save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_2err _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 30 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_2err _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 2err.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_2err 1 1 2err.mr . . AMBER 2 distance NOE simple 0 rr_2err 1 1 2err.mr . . AMBER 3 "dihedral angle" "Not applicable" "Not applicable" 0 rr_2err 1 1 2err.mr . . AMBER 4 stereochemistry chirality "Not applicable" 0 rr_2err 1 1 2err.mr . . AMBER 5 distance NOE simple 0 rr_2err 1 1 2err.mr . . "MR format" 6 "nomenclature mapping" "Not applicable" "Not applicable" 0 rr_2err 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_2err _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER RNA BINDING PROTEIN 25-OCT-05 2ERR *TITLE NMR STRUCTURE OF THE RNA BINDING DOMAIN OF HUMAN FOX-1 IN *TITLE 2 COMPLEX WITH UGCAUGU *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: ATAXIN-2-BINDING PROTEIN 1; *COMPND 3 CHAIN: A; *COMPND 4 FRAGMENT: RNA BINDING DOMAIN; *COMPND 5 ENGINEERED: YES; *COMPND 6 MOL_ID: 2; *COMPND 7 MOLECULE: UGCAUGU; *COMPND 8 CHAIN: B; *COMPND 9 ENGINEERED: YES *SOURCE MOL_ID: 1; *SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; *SOURCE 3 ORGANISM_COMMON: HUMAN; *SOURCE 4 GENE: A2BP1, A2BP; *SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; *SOURCE 6 EXPRESSION_SYSTEM_COMMON: BACTERIA; *SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); *SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; *SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A+; *SOURCE 10 MOL_ID: 2; *SOURCE 11 SYNTHETIC: YES; *SOURCE 12 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS. *KEYWDS PROTEIN-RNA COMPLEX *EXPDTA NMR, 30 STRUCTURES *AUTHOR F.H.-T.ALLAIN, S.D.AUWETER *REVDAT 1 10-JAN-06 2ERR 0 ; save_