data_wwPDB_remediated_restraints_file_for_PDB_entry_2gof # This wwPDB archive file contains, for PDB entry 2gof: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389–396. save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_2gof _Entry.Title "wwPDB remediated NMR restraints for PDB entry 2gof" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 2gof" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_2gof _Assembly.ID 1 _Assembly.Name 2gof _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "not present" _Assembly.Molecular_mass 3739.7076 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 "VPU protein" 1 $VPU_protein A . no . . . . . . rr_2gof 1 stop_ save_ save_VPU_protein _Entity.Sf_category entity _Entity.Sf_framecode VPU_protein _Entity.Entry_ID rr_2gof _Entity.ID 1 _Entity.Name VPU_protein _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code ; QPIQIAIVALVVAIIIAIVV WSIVIIEGRGGKKKK ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 35 _Entity.Paramagnetic no _Entity.Thiol_state "not present" _Entity.Parent_entity_ID 1 _Entity.Formula_weight 3739.7076 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . GLN . rr_2gof 1 2 . PRO . rr_2gof 1 3 . ILE . rr_2gof 1 4 . GLN . rr_2gof 1 5 . ILE . rr_2gof 1 6 . ALA . rr_2gof 1 7 . ILE . rr_2gof 1 8 . VAL . rr_2gof 1 9 . ALA . rr_2gof 1 10 . LEU . rr_2gof 1 11 . VAL . rr_2gof 1 12 . VAL . rr_2gof 1 13 . ALA . rr_2gof 1 14 . ILE . rr_2gof 1 15 . ILE . rr_2gof 1 16 . ILE . rr_2gof 1 17 . ALA . rr_2gof 1 18 . ILE . rr_2gof 1 19 . VAL . rr_2gof 1 20 . VAL . rr_2gof 1 21 . TRP . rr_2gof 1 22 . SER . rr_2gof 1 23 . ILE . rr_2gof 1 24 . VAL . rr_2gof 1 25 . ILE . rr_2gof 1 26 . ILE . rr_2gof 1 27 . GLU . rr_2gof 1 28 . GLY . rr_2gof 1 29 . ARG . rr_2gof 1 30 . GLY . rr_2gof 1 31 . GLY . rr_2gof 1 32 . LYS . rr_2gof 1 33 . LYS . rr_2gof 1 34 . LYS . rr_2gof 1 35 . LYS . rr_2gof 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . GLN 1 1 rr_2gof 1 . PRO 2 2 rr_2gof 1 . ILE 3 3 rr_2gof 1 . GLN 4 4 rr_2gof 1 . ILE 5 5 rr_2gof 1 . ALA 6 6 rr_2gof 1 . ILE 7 7 rr_2gof 1 . VAL 8 8 rr_2gof 1 . ALA 9 9 rr_2gof 1 . LEU 10 10 rr_2gof 1 . VAL 11 11 rr_2gof 1 . VAL 12 12 rr_2gof 1 . ALA 13 13 rr_2gof 1 . ILE 14 14 rr_2gof 1 . ILE 15 15 rr_2gof 1 . ILE 16 16 rr_2gof 1 . ALA 17 17 rr_2gof 1 . ILE 18 18 rr_2gof 1 . VAL 19 19 rr_2gof 1 . VAL 20 20 rr_2gof 1 . TRP 21 21 rr_2gof 1 . SER 22 22 rr_2gof 1 . ILE 23 23 rr_2gof 1 . VAL 24 24 rr_2gof 1 . ILE 25 25 rr_2gof 1 . ILE 26 26 rr_2gof 1 . GLU 27 27 rr_2gof 1 . GLY 28 28 rr_2gof 1 . ARG 29 29 rr_2gof 1 . GLY 30 30 rr_2gof 1 . GLY 31 31 rr_2gof 1 . LYS 32 32 rr_2gof 1 . LYS 33 33 rr_2gof 1 . LYS 34 34 rr_2gof 1 . LYS 35 35 rr_2gof 1 stop_ save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_2gof _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 21 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_2gof _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 2gof.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_2gof 1 1 2gof.mr . . unknown 2 "dipolar coupling" "Not applicable" "Not applicable" 0 rr_2gof 1 1 2gof.mr . . "MR format" 3 "nomenclature mapping" "Not applicable" "Not applicable" 0 rr_2gof 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_2gof _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER VIRUS/VIRAL PROTEIN 12-APR-06 2GOF *TITLE THREE-DIMENSIONAL STRUCTURE OF THE TRANS-MEMBRANE DOMAIN OF *TITLE 2 VPU FROM HIV-1 IN ALIGNED PHOSPHOLIPID BICELLES *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: VPU PROTEIN; *COMPND 3 CHAIN: A; *COMPND 4 FRAGMENT: TRANS-MEMBRANE DOMAIN, RESIDUES 2-30; *COMPND 5 SYNONYM: U ORF PROTEIN; *COMPND 6 ENGINEERED: YES; *COMPND 7 MUTATION: YES *SOURCE MOL_ID: 1; *SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1; *SOURCE 3 ORGANISM_COMMON: VIRUS; *SOURCE 4 GENE: VPU; *SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; *SOURCE 6 EXPRESSION_SYSTEM_COMMON: BACTERIA; *SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C43(DE3); *SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; *SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET31-B(+) *KEYWDS SINGLE TRANS-MEMBRANE HELIX, BICELLE, MAGNETIC ALIGNMENT *EXPDTA NMR, 21 STRUCTURES *AUTHOR S.H.PARK, A.A.DE ANGELIS, A.A.NEVZOROV, C.H.WU, S.J.OPELLA *REVDAT 1 08-AUG-06 2GOF 0 ; save_